Wall clock time and date at job start Mon Mar 30 2020 03:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86802 * 119.99716 * 2 1 4 4 H 1.48496 * 109.47416 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47240 * 300.00458 * 3 2 1 6 6 H 1.48507 * 109.47192 * 59.99908 * 3 2 1 7 7 C 1.40046 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99835 * 180.02562 * 7 2 1 9 9 C 1.46372 * 119.99930 * 359.97438 * 7 2 1 10 10 O 1.21694 * 119.99634 * 5.34232 * 9 7 2 11 11 N 1.34776 * 120.00342 * 185.33274 * 9 7 2 12 12 C 1.47174 * 120.93781 * 5.27987 * 11 9 7 13 13 C 1.53296 * 108.37242 * 230.47056 * 12 11 9 14 14 O 1.42960 * 109.26392 * 307.77441 * 13 12 11 15 15 C 1.42964 * 114.16892 * 62.55626 * 14 13 12 16 16 C 1.47144 * 120.98450 * 185.29503 * 11 9 7 17 17 H 1.09000 * 109.68512 * 249.20454 * 16 11 9 18 18 C 1.53003 * 109.68331 * 9.76008 * 16 11 9 19 19 C 1.53002 * 109.47111 * 177.53715 * 18 16 11 20 20 F 1.39903 * 109.46718 * 173.50727 * 19 18 16 21 21 F 1.39897 * 109.47155 * 293.50949 * 19 18 16 22 22 H 0.97001 * 120.00528 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.64349 * 110.77338 * 12 11 9 24 24 H 1.08999 * 109.72918 * 350.21721 * 12 11 9 25 25 H 1.08998 * 109.50935 * 187.82725 * 13 12 11 26 26 H 1.08991 * 109.51497 * 67.72578 * 13 12 11 27 27 H 1.09001 * 109.50896 * 57.34237 * 15 14 13 28 28 H 1.08993 * 109.51442 * 177.49240 * 15 14 13 29 29 H 1.09001 * 109.46685 * 297.53805 * 18 16 11 30 30 H 1.08994 * 109.46864 * 57.53702 * 18 16 11 31 31 H 1.09001 * 109.46894 * 53.51250 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7006 1.3466 -0.0006 5 1 1.8818 2.3966 -1.2125 6 1 1.8818 2.3965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0001 9 6 1.2752 -2.4804 -0.0005 10 8 0.0622 -2.4827 -0.0982 11 7 1.9448 -3.6451 0.1074 12 6 3.3976 -3.6638 0.3418 13 6 4.0418 -4.5957 -0.6909 14 8 3.3770 -5.8611 -0.6638 15 6 1.9943 -5.8036 -1.0224 16 6 1.2450 -4.9345 -0.0059 17 1 1.2325 -5.4320 0.9638 18 6 -0.1894 -4.7020 -0.4850 19 6 -0.8933 -6.0492 -0.6600 20 9 -2.2442 -5.8346 -0.9540 21 9 -0.2943 -6.7556 -1.7085 22 1 -0.4851 0.8400 0.0004 23 1 3.6019 -4.0325 1.3470 24 1 3.8013 -2.6574 0.2304 25 1 5.0959 -4.7330 -0.4499 26 1 3.9496 -4.1573 -1.6845 27 1 1.8939 -5.3691 -2.0170 28 1 1.5754 -6.8099 -1.0200 29 1 -0.7262 -4.1045 0.2519 30 1 -0.1729 -4.1741 -1.4385 31 1 -0.8091 -6.6255 0.2613 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343435513.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:47 Heat of formation + Delta-G solvation = -168.894719 kcal Electronic energy + Delta-G solvation = -19357.095525 eV Core-core repulsion = 15888.999067 eV Total energy + Delta-G solvation = -3468.096458 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.60091 -46.61077 -39.36270 -36.88894 -33.90372 -32.97250 -32.41137 -28.84861 -26.98719 -25.94379 -23.80994 -21.72221 -21.47103 -19.16166 -17.37725 -16.94593 -16.65882 -16.21688 -15.63609 -15.55571 -14.83914 -14.57062 -14.36050 -13.93888 -13.70698 -13.42423 -13.04543 -12.59434 -12.41391 -12.08269 -11.84361 -11.43396 -11.33919 -11.12250 -10.92554 -10.73317 -10.51981 -10.34649 -10.25730 -10.05089 -9.59723 -8.97759 -7.41578 -7.34653 -6.30091 -4.79813 3.04399 3.13397 3.16851 3.87582 4.12258 4.14128 4.38825 4.41540 4.83419 5.05156 5.08339 5.28576 5.44263 5.45754 5.57086 5.66021 5.81768 5.84592 6.05491 6.06973 6.22215 6.38427 6.64037 6.95558 7.31254 7.34885 7.47315 7.95768 8.16422 8.88458 9.22045 10.39511 10.58609 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.023952 B = 0.008281 C = 0.006374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.705821 B = 3380.559084 C = 4391.582158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.559 3.441 10 O -0.567 6.567 11 N -0.641 5.641 12 C 0.089 3.911 13 C 0.044 3.956 14 O -0.389 6.389 15 C 0.043 3.957 16 C 0.125 3.875 17 H 0.061 0.939 18 C -0.152 4.152 19 C 0.245 3.755 20 F -0.208 7.208 21 F -0.214 7.214 22 H 0.270 0.730 23 H 0.052 0.948 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.104 0.896 29 H 0.137 0.863 30 H 0.092 0.908 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.390 -7.936 0.168 9.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.579 4.579 8 H 0.091 0.909 9 C 0.366 3.634 10 O -0.451 6.451 11 N -0.381 5.381 12 C -0.035 4.035 13 C -0.034 4.034 14 O -0.307 6.307 15 C -0.035 4.035 16 C 0.020 3.980 17 H 0.079 0.921 18 C -0.190 4.190 19 C 0.191 3.809 20 F -0.190 7.190 21 F -0.196 7.196 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.121 0.879 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.121 0.879 29 H 0.155 0.845 30 H 0.110 0.890 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.613 -7.987 0.132 8.768 hybrid contribution 0.381 0.982 -0.163 1.066 sum 3.994 -7.005 -0.031 8.064 Atomic orbital electron populations 1.69992 1.07042 1.27502 1.34638 1.25720 0.94659 1.00366 0.92478 0.86313 0.80487 0.81656 0.78343 1.18711 1.20084 1.20077 1.20989 0.93627 0.89084 1.54192 0.90851 1.18268 0.86961 0.81974 0.76151 1.90540 1.13995 1.85010 1.55561 1.48323 1.06659 1.04379 1.78693 1.22127 0.82698 1.01401 0.97304 1.23032 0.96291 0.84823 0.99257 1.87867 1.22821 1.29885 1.90174 1.23456 0.81635 1.01017 0.97353 1.21385 0.91744 0.87145 0.97744 0.92141 1.23326 0.95797 0.92088 1.07773 1.22532 0.75566 0.95538 0.87291 1.92950 1.35291 1.95937 1.94789 1.92889 1.83139 1.81058 1.62479 0.91937 0.92977 0.87891 0.88867 0.92998 0.92852 0.87854 0.84486 0.88952 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.67 11.84 55.55 0.66 -21.01 16 2 C 0.09 2.33 5.50 -17.37 -0.10 2.23 16 3 Si 0.91 19.20 29.56 -169.99 -5.02 14.17 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.54 -14.33 8.87 -35.63 -0.32 -14.65 16 8 H 0.07 1.77 5.70 -52.49 -0.30 1.47 16 9 C 0.56 14.80 7.45 -12.99 -0.10 14.70 16 10 O -0.57 -16.48 10.79 5.19 0.06 -16.42 16 11 N -0.64 -13.88 3.02 -166.38 -0.50 -14.38 16 12 C 0.09 1.60 6.56 -3.52 -0.02 1.58 16 13 C 0.04 0.68 6.98 37.31 0.26 0.95 16 14 O -0.39 -6.63 10.74 -35.23 -0.38 -7.01 16 15 C 0.04 0.73 5.10 37.31 0.19 0.92 16 16 C 0.12 2.34 3.23 -67.42 -0.22 2.12 16 17 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 18 C -0.15 -2.96 3.54 -26.73 -0.09 -3.06 16 19 C 0.24 3.87 5.12 37.16 0.19 4.06 16 20 F -0.21 -3.68 17.34 2.25 0.04 -3.64 16 21 F -0.21 -3.41 14.26 2.25 0.03 -3.38 16 22 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.10 1.88 5.40 -51.93 -0.28 1.60 16 25 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.10 1.55 6.13 -51.93 -0.32 1.24 16 29 H 0.14 3.08 6.13 -51.93 -0.32 2.76 16 30 H 0.09 2.08 7.42 -51.93 -0.39 1.69 16 31 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 259.13 15.07 3.90 3.90 Total: -1.00 -30.91 259.13 -4.69 -35.60 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -3.27 Total: 3.32 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -0.20 Total: 8.85 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.16 Total: -35.40 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.32 Total: -23.43 kcal Atomic # 9 Polarization: -7.09 SS G_CDS: 0.07 Total: -7.02 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.91 -4.69 -35.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343435513.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.299 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds