Wall clock time and date at job start Mon Mar 30 2020 04:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86797 * 120.00551 * 2 1 4 4 H 1.48499 * 109.47212 * 275.38498 * 3 2 1 5 5 H 1.48497 * 109.46871 * 35.38620 * 3 2 1 6 6 H 1.48506 * 109.47220 * 155.38076 * 3 2 1 7 7 C 1.39955 * 119.99389 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00418 * 342.20415 * 7 2 1 9 9 C 1.41402 * 119.99516 * 162.21601 * 7 2 1 10 10 C 1.40737 * 120.24292 * 329.60922 * 9 7 2 11 11 C 1.37601 * 119.73987 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.25303 * 359.93622 * 11 10 9 13 13 C 1.38616 * 120.49924 * 0.02562 * 12 11 10 14 14 C 1.37641 * 120.24735 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.12380 * 179.70451 * 14 13 12 16 16 H 1.09000 * 109.46892 * 220.00202 * 15 14 13 17 17 N 1.46901 * 109.47239 * 339.99871 * 15 14 13 18 18 C 1.52997 * 109.47322 * 100.00307 * 15 14 13 19 19 C 1.53000 * 109.47316 * 174.99812 * 18 15 14 20 20 C 1.50702 * 109.47090 * 179.97438 * 19 18 15 21 21 O 1.20822 * 120.00097 * 0.02562 * 20 19 18 22 22 O 1.34230 * 119.99714 * 180.02562 * 20 19 18 23 23 H 0.96997 * 119.99262 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.12721 * 0.05021 * 10 9 7 25 25 H 1.08005 * 119.86981 * 179.97438 * 11 10 9 26 26 H 1.07995 * 119.75185 * 180.02562 * 12 11 10 27 27 H 1.07994 * 119.87232 * 179.97438 * 13 12 11 28 28 H 1.00902 * 110.99902 * 296.04716 * 17 15 14 29 29 H 1.00894 * 111.00029 * 60.00657 * 17 15 14 30 30 H 1.09005 * 109.46994 * 294.99683 * 18 15 14 31 31 H 1.08993 * 109.47366 * 54.99605 * 18 15 14 32 32 H 1.08992 * 109.47147 * 299.99584 * 19 18 15 33 33 H 1.09006 * 109.47130 * 59.99949 * 19 18 15 34 34 H 0.96701 * 116.99596 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.3762 2.1120 -1.3939 5 1 1.5014 2.6170 0.8108 6 1 3.5922 1.4098 0.5833 7 6 2.0079 -1.2121 -0.0005 8 1 1.5066 -2.1251 0.2849 9 6 3.3712 -1.2412 -0.3746 10 6 3.8703 -0.3132 -1.3075 11 6 5.1986 -0.3512 -1.6645 12 6 6.0447 -1.2982 -1.1079 13 6 5.5642 -2.2166 -0.1875 14 6 4.2389 -2.1978 0.1835 15 6 3.7180 -3.2018 1.1794 16 1 2.7299 -3.5419 0.8694 17 7 4.6332 -4.3491 1.2425 18 6 3.6228 -2.5488 2.5597 19 6 2.9780 -3.5273 3.5434 20 6 2.8848 -2.8843 4.9032 21 8 3.2918 -1.7588 5.0684 22 8 2.3496 -3.5621 5.9308 23 1 -0.4849 0.8401 0.0004 24 1 3.2133 0.4262 -1.7412 25 1 5.5838 0.3597 -2.3805 26 1 7.0860 -1.3205 -1.3935 27 1 6.2321 -2.9501 0.2394 28 1 4.6637 -4.8364 0.3594 29 1 5.5567 -4.0597 1.5279 30 1 4.6223 -2.2888 2.9084 31 1 3.0149 -1.6466 2.4937 32 1 1.9786 -3.7873 3.1949 33 1 3.5860 -4.4297 3.6095 34 1 2.3110 -3.1079 6.7836 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390230031.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:22 Heat of formation + Delta-G solvation = -109.102073 kcal Electronic energy + Delta-G solvation = -18133.700386 eV Core-core repulsion = 15222.426262 eV Total energy + Delta-G solvation = -2911.274125 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.22099 -40.11772 -37.26094 -36.68684 -35.50757 -32.82082 -32.32366 -30.63809 -27.56315 -26.77605 -24.02551 -22.79474 -21.66906 -20.89894 -19.30662 -18.98945 -17.81813 -17.42326 -17.18708 -16.56841 -16.35873 -15.69458 -15.50226 -15.03609 -14.56934 -14.41365 -13.96903 -13.90258 -13.60400 -13.29195 -12.83087 -12.73008 -12.60263 -12.50622 -12.28402 -11.95323 -11.81804 -11.58732 -11.56189 -11.34004 -10.98726 -9.61258 -9.41152 -9.30323 -8.87741 -6.42904 0.77895 0.85630 1.22148 1.27470 1.36046 1.43930 2.09124 2.24107 2.63834 3.49321 3.81373 3.97712 4.21939 4.29672 4.31882 4.39977 4.52614 4.66860 4.78289 4.88389 4.89785 4.97191 5.10538 5.27608 5.37465 5.40256 5.65756 5.67395 5.86035 5.88311 6.01639 6.22714 6.40234 6.45360 6.74319 6.79648 6.90635 7.05767 8.19588 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.008951 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.918942 B = 3127.299245 C = 4132.903918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.053 3.947 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.465 4.465 8 H 0.072 0.928 9 C 0.075 3.925 10 C -0.255 4.255 11 C -0.094 4.094 12 C -0.228 4.228 13 C -0.088 4.088 14 C -0.212 4.212 15 C 0.164 3.836 16 H 0.069 0.931 17 N -0.829 5.829 18 C -0.082 4.082 19 C -0.097 4.097 20 C 0.482 3.518 21 O -0.558 6.558 22 O -0.511 6.511 23 H 0.289 0.711 24 H 0.089 0.911 25 H 0.117 0.883 26 H 0.126 0.874 27 H 0.131 0.869 28 H 0.347 0.653 29 H 0.342 0.658 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.206 -6.200 5.464 10.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.161 4.161 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.494 4.494 8 H 0.090 0.910 9 C 0.072 3.928 10 C -0.275 4.275 11 C -0.112 4.112 12 C -0.247 4.247 13 C -0.106 4.106 14 C -0.215 4.215 15 C 0.052 3.948 16 H 0.087 0.913 17 N -0.359 5.359 18 C -0.121 4.121 19 C -0.135 4.135 20 C 0.327 3.673 21 O -0.450 6.450 22 O -0.325 6.325 23 H 0.100 0.900 24 H 0.107 0.893 25 H 0.135 0.865 26 H 0.144 0.856 27 H 0.148 0.852 28 H 0.160 0.840 29 H 0.157 0.843 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.154 0.846 34 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 6.549 -6.316 5.735 10.755 hybrid contribution 0.186 2.018 -0.387 2.063 sum 6.735 -4.298 5.348 9.614 Atomic orbital electron populations 1.69713 1.08736 1.30893 1.38111 1.26581 0.95123 1.03464 0.90959 0.85711 0.79689 0.78145 0.78866 1.18925 1.21183 1.18428 1.19381 0.93858 0.95318 1.40885 0.91022 1.17786 0.92880 0.91994 0.90112 1.21201 0.96818 1.04952 1.04503 1.20979 0.93185 0.98240 0.98832 1.20884 0.99563 1.00126 1.04094 1.20860 0.94329 0.98450 0.96999 1.20834 0.94013 1.03337 1.03305 1.19765 0.96028 0.87627 0.91392 0.91296 1.59089 1.14266 1.25597 1.36904 1.21178 1.00416 0.97279 0.93195 1.21318 1.05176 1.00763 0.86199 1.24003 0.71923 0.83606 0.87814 1.90710 1.47316 1.21666 1.85285 1.84519 1.75098 1.50120 1.22731 0.90016 0.89327 0.86451 0.85575 0.85165 0.84036 0.84344 0.92302 0.93629 0.87455 0.84640 0.71516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.36 13.93 21.83 0.30 -46.05 16 2 C 0.05 2.84 5.41 85.26 0.46 3.30 16 3 Si 0.95 44.51 24.52 68.60 1.68 46.19 16 4 H -0.26 -11.78 6.72 99.48 0.67 -11.11 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.26 -12.68 6.86 99.48 0.68 -11.99 16 7 C -0.46 -24.81 8.18 23.47 0.19 -24.62 16 8 H 0.07 4.01 6.74 -2.91 -0.02 3.99 16 9 C 0.08 3.69 5.09 -21.29 -0.11 3.58 16 10 C -0.26 -12.11 7.17 22.73 0.16 -11.95 16 11 C -0.09 -3.85 10.02 22.22 0.22 -3.63 16 12 C -0.23 -8.36 10.05 22.46 0.23 -8.13 16 13 C -0.09 -3.18 9.24 22.22 0.21 -2.98 16 14 C -0.21 -8.77 5.13 -19.41 -0.10 -8.87 16 15 C 0.16 5.79 2.46 44.17 0.11 5.90 16 16 H 0.07 2.72 6.76 -2.39 -0.02 2.70 16 17 N -0.83 -21.85 8.17 -171.81 -1.40 -23.25 16 18 C -0.08 -2.96 4.08 30.59 0.12 -2.84 16 19 C -0.10 -2.79 5.70 29.85 0.17 -2.62 16 20 C 0.48 14.40 8.33 71.24 0.59 14.99 16 21 O -0.56 -21.16 16.74 21.98 0.37 -20.79 16 22 O -0.51 -11.33 13.42 -51.42 -0.69 -12.02 16 23 H 0.29 14.49 8.30 -92.71 -0.77 13.72 16 24 H 0.09 4.31 4.77 -2.91 -0.01 4.29 16 25 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 26 H 0.13 3.79 8.06 -2.91 -0.02 3.76 16 27 H 0.13 3.68 6.24 -2.91 -0.02 3.67 16 28 H 0.35 8.53 9.06 -89.69 -0.81 7.72 16 29 H 0.34 8.11 7.29 -89.70 -0.65 7.46 16 30 H 0.06 2.09 8.10 -2.38 -0.02 2.08 16 31 H 0.04 2.02 7.38 -2.39 -0.02 2.00 16 32 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.14 3.23 7.75 -2.38 -0.02 3.21 16 34 H 0.42 5.66 9.10 -74.06 -0.67 4.98 16 Total: -1.00 -63.81 284.07 1.48 -62.33 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: -1.04 Total: 31.45 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 2.26 Total: -37.86 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -1.10 Total: -69.30 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.32 Total: -32.81 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.68 Total: 46.19 kcal Total: -63.81 1.48 -62.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390230031.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.771 kcal (2) G-P(sol) polarization free energy of solvation -63.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds