Wall clock time and date at job start Mon Mar 30 2020 04:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47355 * 2 1 4 4 C 1.50698 * 109.47004 * 239.99471 * 2 1 3 5 5 H 1.08004 * 120.00131 * 239.99839 * 4 2 1 6 6 C 1.37868 * 119.99939 * 60.00368 * 4 2 1 7 7 N 1.31514 * 120.00219 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00194 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47123 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47254 * 119.99639 * 8 6 4 11 11 H 1.48500 * 109.47516 * 240.00335 * 8 6 4 12 12 C 1.50707 * 109.46797 * 119.99650 * 2 1 3 13 13 N 1.30977 * 126.43256 * 240.00145 * 12 2 1 14 14 C 1.35229 * 105.57958 * 180.02562 * 13 12 2 15 15 C 1.48370 * 126.41939 * 180.02562 * 14 13 12 16 16 C 1.36540 * 126.91746 * 179.97438 * 15 14 13 17 17 N 1.35069 * 106.06018 * 180.02562 * 16 15 14 18 18 C 1.46504 * 125.73376 * 180.02562 * 17 16 15 19 19 N 1.28652 * 108.53683 * 0.02562 * 17 16 15 20 20 N 1.28625 * 110.48676 * 359.72053 * 19 17 16 21 21 N 1.30806 * 107.16390 * 359.97438 * 14 13 12 22 22 O 1.21293 * 110.08817 * 359.97438 * 21 14 13 23 23 H 1.09005 * 109.47267 * 60.00295 * 1 2 3 24 24 H 1.09002 * 109.47110 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47247 * 300.00083 * 1 2 3 26 26 H 0.97002 * 120.00380 * 180.02562 * 7 6 4 27 27 H 1.08000 * 126.96873 * 359.97438 * 16 15 14 28 28 H 1.09002 * 109.47126 * 90.00058 * 18 17 16 29 29 H 1.09003 * 109.46839 * 209.99554 * 18 17 16 30 30 H 1.08992 * 109.46926 * 329.99794 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1198 -4.0078 9 1 3.1473 -2.2867 -3.6036 10 1 1.1677 -1.5869 -4.8163 11 1 3.1473 -0.1862 -4.8160 12 6 2.0323 -0.7104 1.2306 13 7 2.7882 -0.1989 2.1699 14 6 2.9830 -1.1958 3.0625 15 6 3.7769 -1.1156 4.3134 16 6 3.9797 -2.1148 5.2216 17 7 4.7585 -1.5867 6.1905 18 6 5.2388 -2.2918 7.3815 19 7 5.0078 -0.3604 5.8918 20 7 4.4454 -0.0448 4.7790 21 7 2.3394 -2.2439 2.6171 22 8 1.7892 -1.9805 1.5688 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7082 1.1606 -3.4844 27 1 3.5947 -3.1228 5.1750 28 1 6.1974 -2.7625 7.1633 29 1 5.3605 -1.5819 8.1996 30 1 4.5158 -3.0556 7.6677 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594734453.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:35 Heat of formation + Delta-G solvation = 142.473857 kcal Electronic energy + Delta-G solvation = -17254.843384 eV Core-core repulsion = 14283.230818 eV Total energy + Delta-G solvation = -2971.612566 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.097 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.44525 -44.44893 -37.18057 -36.71720 -35.61450 -34.06251 -32.46635 -31.17542 -28.94816 -27.34798 -26.11105 -25.29206 -23.62727 -22.78265 -21.66782 -19.29816 -18.90501 -18.16213 -17.75791 -17.72750 -16.85615 -16.37560 -15.79497 -15.40918 -14.78604 -14.32879 -13.92270 -13.73592 -13.54003 -13.14176 -13.03615 -12.91878 -12.84769 -12.52970 -12.26751 -12.22651 -12.06034 -11.91307 -11.57908 -11.20687 -10.95290 -10.55570 -10.19993 -8.19493 -6.36204 -0.13210 0.40860 0.78657 1.28727 1.46786 1.49260 1.60394 1.83423 1.95253 2.29809 2.43121 2.83039 3.12155 3.55913 3.72313 3.89734 4.16116 4.34217 4.37127 4.63394 4.66841 4.72784 4.77092 4.88862 4.99806 5.04354 5.43357 5.44188 5.67192 5.85835 6.05929 6.65846 7.09522 7.21551 7.33138 8.86693 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.046383 B = 0.004567 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.527433 B = 6128.825429 C = 6224.417070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.125 3.875 3 H 0.053 0.947 4 C -0.543 4.543 5 H 0.055 0.945 6 C 0.031 3.969 7 N -0.905 5.905 8 Si 0.965 3.035 9 H -0.272 1.272 10 H -0.271 1.271 11 H -0.279 1.279 12 C 0.244 3.756 13 N -0.516 5.516 14 C 0.242 3.758 15 C 0.017 3.983 16 C 0.025 3.975 17 N -0.276 5.276 18 C 0.065 3.935 19 N -0.094 5.094 20 N -0.271 5.271 21 N -0.386 5.386 22 O 0.070 5.930 23 H 0.085 0.915 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.271 0.729 27 H 0.242 0.758 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.638 -9.697 16.763 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.105 3.895 3 H 0.071 0.929 4 C -0.581 4.581 5 H 0.073 0.927 6 C -0.171 4.171 7 N -0.542 5.542 8 Si 0.790 3.210 9 H -0.196 1.196 10 H -0.196 1.196 11 H -0.204 1.204 12 C 0.026 3.974 13 N -0.250 5.250 14 C -0.030 4.030 15 C -0.122 4.122 16 C -0.131 4.131 17 N -0.068 5.068 18 C -0.072 4.072 19 N -0.075 5.075 20 N -0.140 5.140 21 N -0.100 5.100 22 O 0.015 5.985 23 H 0.104 0.896 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.258 0.742 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.523 -8.737 17.740 20.532 hybrid contribution -0.248 -0.899 -1.340 1.633 sum 5.275 -9.636 16.401 19.739 Atomic orbital electron populations 1.21709 0.94102 1.01103 1.01682 1.17710 0.94998 0.94131 0.82711 0.92944 1.21080 1.33413 1.13352 0.90264 0.92652 1.25588 0.94538 0.95427 1.01519 1.69951 1.36101 1.23170 1.25025 0.85391 0.78396 0.78468 0.78742 1.19616 1.19603 1.20429 1.29863 0.89906 0.81046 0.96624 1.72189 1.18983 1.29822 1.03985 1.22599 0.98744 0.86123 0.95579 1.18472 1.05198 0.93584 0.94921 1.23923 0.98196 1.02064 0.88882 1.47676 1.31579 1.08454 1.19133 1.22988 1.03890 0.98497 0.81841 1.78219 1.20779 0.98052 1.10448 1.75392 1.09539 1.24937 1.04085 1.74718 1.13918 1.22388 0.98956 1.85223 1.54447 1.30278 1.28558 0.89620 0.93378 0.94679 0.91984 0.74228 0.86600 0.86549 0.84449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 8.95 71.98 0.64 -5.21 16 2 C 0.12 6.31 2.77 -12.28 -0.03 6.28 16 3 H 0.05 2.88 8.14 -2.39 -0.02 2.86 16 4 C -0.54 -29.04 8.55 25.60 0.22 -28.82 16 5 H 0.06 2.98 7.74 -2.91 -0.02 2.96 16 6 C 0.03 1.60 5.30 84.65 0.45 2.05 16 7 N -0.91 -48.66 11.32 21.44 0.24 -48.42 16 8 Si 0.97 41.67 29.54 68.60 2.03 43.70 16 9 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 12 C 0.24 11.62 6.94 88.36 0.61 12.23 16 13 N -0.52 -24.82 11.58 -302.42 -3.50 -28.32 16 14 C 0.24 10.15 8.10 137.26 1.11 11.27 16 15 C 0.02 0.61 7.22 41.03 0.30 0.91 16 16 C 0.03 0.57 11.58 83.80 0.97 1.54 16 17 N -0.28 -5.38 3.73 -368.42 -1.37 -6.75 16 18 C 0.07 0.31 11.38 127.77 1.45 1.77 16 19 N -0.09 -2.80 13.14 37.02 0.49 -2.31 16 20 N -0.27 -10.29 12.45 -49.31 -0.61 -10.91 16 21 N -0.39 -15.62 12.20 -59.05 -0.72 -16.34 16 22 O 0.07 3.09 11.29 74.67 0.84 3.93 16 23 H 0.09 4.23 6.07 -2.38 -0.01 4.21 16 24 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 27 H 0.24 3.26 8.06 -2.91 -0.02 3.24 16 28 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.14 -0.25 8.14 -2.39 -0.02 -0.27 16 Total: -1.00 -70.42 276.36 4.29 -66.14 By element: Atomic # 1 Polarization: -3.90 SS G_CDS: 1.17 Total: -2.73 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 5.72 Total: 2.01 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -5.48 Total: -113.05 kcal Atomic # 8 Polarization: 3.09 SS G_CDS: 0.84 Total: 3.93 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -70.42 4.29 -66.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594734453.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.612 kcal (2) G-P(sol) polarization free energy of solvation -70.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds