Wall clock time and date at job start Mon Mar 30 2020 03:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46888 * 2 1 4 4 C 1.50700 * 109.46923 * 240.00243 * 2 1 3 5 5 H 1.08001 * 120.00100 * 240.00060 * 4 2 1 6 6 C 1.37879 * 120.00103 * 59.99477 * 4 2 1 7 7 N 1.31508 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99924 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47356 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47003 * 120.00122 * 8 6 4 11 11 H 1.48500 * 109.47550 * 240.00356 * 8 6 4 12 12 C 1.50696 * 109.47424 * 120.00127 * 2 1 3 13 13 N 1.31131 * 126.55140 * 240.30331 * 12 2 1 14 14 C 1.34489 * 105.61827 * 180.12180 * 13 12 2 15 15 C 1.50697 * 126.29115 * 179.90353 * 14 13 12 16 16 C 1.50703 * 109.47190 * 269.71141 * 15 14 13 17 17 C 1.41375 * 126.80544 * 124.97141 * 16 15 14 18 18 C 1.35450 * 103.98779 * 180.02562 * 17 16 15 19 19 O 1.34034 * 106.44531 * 0.02562 * 18 17 16 20 20 N 1.20925 * 111.56886 * 359.97438 * 19 18 17 21 21 N 1.29949 * 107.42278 * 359.63696 * 14 13 12 22 22 O 1.21308 * 110.24936 * 0.22814 * 21 14 13 23 23 H 1.09001 * 109.47574 * 60.00078 * 1 2 3 24 24 H 1.09001 * 109.46779 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46690 * 300.00053 * 1 2 3 26 26 H 0.97000 * 120.00516 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.47340 * 149.71149 * 15 14 13 28 28 H 1.09002 * 109.47497 * 29.71051 * 15 14 13 29 29 H 1.08002 * 128.00212 * 359.97438 * 17 16 15 30 30 H 1.08000 * 126.77687 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1474 -2.2863 -3.6039 10 1 1.1676 -1.5866 -4.8165 11 1 3.1471 -0.1857 -4.8162 12 6 2.0324 -0.7104 1.2304 13 7 2.7848 -0.1991 2.1749 14 6 2.9814 -1.1932 3.0591 15 6 3.7874 -1.1103 4.3297 16 6 5.2169 -1.4922 4.0436 17 6 6.3707 -0.7241 4.3219 18 6 7.3924 -1.4962 3.8805 19 8 6.8388 -2.6146 3.3913 20 7 5.6338 -2.5943 3.4903 21 7 2.3439 -2.2367 2.6195 22 8 1.7920 -1.9803 1.5701 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 0.7086 1.1614 -3.4843 27 1 3.3702 -1.7930 5.0699 28 1 3.7539 -0.0914 4.7156 29 1 6.4249 0.2526 4.7796 30 1 8.4451 -1.2575 3.9152 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596581770.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:32 Heat of formation + Delta-G solvation = 120.560126 kcal Electronic energy + Delta-G solvation = -17480.745703 eV Core-core repulsion = 14475.890135 eV Total energy + Delta-G solvation = -3004.855568 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.98782 -44.73629 -35.98289 -35.09013 -34.07087 -32.16470 -31.62532 -29.97340 -28.67072 -25.38974 -23.49250 -23.20827 -22.92704 -21.29433 -19.84924 -17.93901 -17.57792 -17.22734 -16.70452 -16.04628 -15.12879 -15.03067 -14.07944 -13.89518 -13.47333 -13.35708 -12.91778 -12.68181 -11.87234 -11.66473 -11.28663 -11.19808 -11.04741 -10.77697 -10.66271 -10.41663 -10.31827 -10.14137 -10.06784 -9.68311 -9.47566 -8.88706 -8.58110 -6.22622 -4.31590 1.48551 1.93949 2.19752 2.92852 3.22768 3.25423 3.30943 3.37341 3.82990 4.06398 4.19360 4.31233 4.55151 4.76219 5.07607 5.11004 5.27474 5.33906 5.49964 5.67680 5.84716 6.03901 6.50030 6.57231 6.66381 6.83121 6.86377 7.37734 7.61818 7.80122 7.99921 8.26381 8.68114 8.96062 9.34777 10.83676 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.026256 B = 0.005801 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.177731 B = 4825.380848 C = 5419.312229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.125 3.875 3 H 0.075 0.925 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.070 3.930 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.281 1.281 12 C 0.244 3.756 13 N -0.512 5.512 14 C 0.153 3.847 15 C 0.059 3.941 16 C 0.018 3.982 17 C -0.222 4.222 18 C -0.065 4.065 19 O 0.104 5.896 20 N -0.350 5.350 21 N -0.395 5.395 22 O 0.073 5.927 23 H 0.101 0.899 24 H 0.039 0.961 25 H 0.017 0.983 26 H 0.266 0.734 27 H 0.105 0.895 28 H 0.115 0.885 29 H 0.174 0.826 30 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.242 -0.777 12.069 14.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.104 3.896 3 H 0.093 0.907 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.133 4.133 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.207 1.207 12 C 0.026 3.974 13 N -0.246 5.246 14 C -0.121 4.121 15 C 0.020 3.980 16 C -0.142 4.142 17 C -0.243 4.243 18 C -0.147 4.147 19 O 0.035 5.965 20 N -0.051 5.051 21 N -0.106 5.106 22 O 0.017 5.983 23 H 0.120 0.880 24 H 0.058 0.942 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.124 0.876 28 H 0.133 0.867 29 H 0.192 0.808 30 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 7.741 -2.199 12.096 14.528 hybrid contribution 0.605 0.511 -0.621 1.006 sum 8.345 -1.688 11.475 14.289 Atomic orbital electron populations 1.21856 0.95506 1.00682 1.01630 1.17837 0.93877 0.95245 0.82603 0.90725 1.20919 1.32829 1.13180 0.89203 0.91953 1.24869 0.94518 0.94834 0.99055 1.69856 1.35778 1.22391 1.24156 0.86339 0.78813 0.79696 0.82128 1.19557 1.20557 1.20696 1.30159 0.89697 0.80785 0.96779 1.71924 1.19331 1.29559 1.03824 1.25179 1.00761 0.86577 0.99563 1.18030 0.84973 1.04384 0.90653 1.23299 0.97724 0.91755 1.01406 1.22712 0.90710 1.03140 1.07776 1.26018 1.01344 0.87451 0.99848 1.84872 1.14812 1.36643 1.60196 1.73946 0.91975 1.21759 1.17432 1.74551 1.13333 1.23721 0.98998 1.85263 1.54128 1.30692 1.28217 0.88039 0.94159 0.96396 0.92381 0.87650 0.86673 0.80834 0.76682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.95 37.16 0.33 -2.84 16 2 C 0.12 3.09 2.77 -92.92 -0.26 2.84 16 3 H 0.08 1.95 8.14 -51.93 -0.42 1.52 16 4 C -0.52 -14.05 8.55 -34.44 -0.29 -14.35 16 5 H 0.06 1.72 7.74 -52.49 -0.41 1.32 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 7 N -0.88 -23.71 11.32 55.43 0.63 -23.08 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.24 5.75 6.96 -13.06 -0.09 5.66 16 13 N -0.51 -11.45 11.55 -9.87 -0.11 -11.57 16 14 C 0.15 3.07 7.44 -156.38 -1.16 1.91 16 15 C 0.06 0.87 6.44 -29.03 -0.19 0.68 16 16 C 0.02 0.27 6.58 -82.10 -0.54 -0.27 16 17 C -0.22 -2.47 11.12 -39.38 -0.44 -2.90 16 18 C -0.07 -0.65 12.30 29.74 0.37 -0.28 16 19 O 0.10 1.46 11.20 17.19 0.19 1.65 16 20 N -0.35 -5.95 12.05 33.42 0.40 -5.55 16 21 N -0.40 -8.68 12.16 30.90 0.38 -8.30 16 22 O 0.07 1.72 11.31 18.11 0.20 1.92 16 23 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 24 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 27 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 29 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.22 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 275.78 15.07 4.16 4.16 Total: -1.00 -31.03 275.78 -4.36 -35.38 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: -2.82 Total: -2.55 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -2.37 Total: -7.78 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 1.29 Total: -48.50 kcal Atomic # 8 Polarization: 3.18 SS G_CDS: 0.40 Total: 3.58 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.03 -4.36 -35.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596581770.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.944 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds