Wall clock time and date at job start Mon Mar 30 2020 03:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86803 * 119.99993 * 2 1 4 4 H 1.48503 * 109.46941 * 90.00667 * 3 2 1 5 5 H 1.48496 * 109.47213 * 330.00182 * 3 2 1 6 6 H 1.48498 * 109.47038 * 209.99859 * 3 2 1 7 7 C 1.40057 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00269 * 10.21941 * 7 2 1 9 9 C 1.46376 * 119.99540 * 190.22459 * 7 2 1 10 10 O 1.21678 * 120.00404 * 9.31056 * 9 7 2 11 11 N 1.34781 * 119.99722 * 189.30763 * 9 7 2 12 12 C 1.46921 * 120.62836 * 354.75287 * 11 9 7 13 13 C 1.53196 * 108.77650 * 233.58467 * 12 11 9 14 14 C 1.53041 * 109.30913 * 305.36408 * 13 12 11 15 15 C 1.53045 * 109.53475 * 61.36755 * 14 13 12 16 16 H 1.09005 * 109.49720 * 58.58477 * 15 14 13 17 17 O 1.42907 * 109.49434 * 178.64845 * 15 14 13 18 18 C 1.42902 * 113.99859 * 210.00069 * 17 15 14 19 19 F 1.39905 * 109.46903 * 300.00205 * 18 17 15 20 20 F 1.39896 * 109.47162 * 59.99658 * 18 17 15 21 21 C 1.46923 * 120.63064 * 174.47134 * 11 9 7 22 22 H 0.96995 * 120.00608 * 174.89682 * 1 2 3 23 23 H 1.09001 * 109.59129 * 353.37149 * 12 11 9 24 24 H 1.09001 * 109.58656 * 113.65720 * 12 11 9 25 25 H 1.08996 * 109.49832 * 65.31590 * 13 12 11 26 26 H 1.09005 * 109.49972 * 185.41791 * 13 12 11 27 27 H 1.09005 * 109.45840 * 181.38456 * 14 13 12 28 28 H 1.08996 * 109.46591 * 301.35608 * 14 13 12 29 29 H 1.08995 * 109.47021 * 179.97438 * 18 17 15 30 30 H 1.08999 * 109.58711 * 246.20016 * 21 11 9 31 31 H 1.09000 * 109.58494 * 6.63321 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4883 2.0463 1.4001 5 1 1.4381 2.6527 -0.7000 6 1 3.5382 1.4402 -0.7000 7 6 2.0069 -1.2130 -0.0005 8 1 1.4798 -2.1407 -0.1669 9 6 3.4532 -1.2231 0.2245 10 8 4.0210 -0.2068 0.5785 11 7 4.1560 -2.3581 0.0396 12 6 3.4716 -3.6194 -0.2757 13 6 3.9157 -4.6862 0.7300 14 6 5.4432 -4.7817 0.7250 15 6 6.0413 -3.4386 1.1498 16 1 5.6771 -3.1760 2.1431 17 8 7.4666 -3.5379 1.1752 18 6 8.0917 -2.6849 2.1363 19 9 7.7757 -1.3519 1.8521 20 9 7.6322 -3.0100 3.4171 21 6 5.6216 -2.3565 0.1434 22 1 -0.4851 -0.8366 -0.0747 23 1 2.3931 -3.4774 -0.2054 24 1 3.7335 -3.9347 -1.2857 25 1 3.5716 -4.4119 1.7271 26 1 3.4901 -5.6499 0.4499 27 1 5.7608 -5.5574 1.4218 28 1 5.7882 -5.0316 -0.2783 29 1 9.1724 -2.8196 2.0933 30 1 6.0573 -2.5723 -0.8322 31 1 5.9622 -1.3809 0.4904 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614021933.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:49 Heat of formation + Delta-G solvation = -210.698382 kcal Electronic energy + Delta-G solvation = -19182.226477 eV Core-core repulsion = 15712.317276 eV Total energy + Delta-G solvation = -3469.909201 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.00568 -47.11055 -39.25913 -37.52284 -35.65965 -32.95034 -31.78640 -30.22392 -26.59078 -25.38523 -24.33043 -22.51683 -20.84021 -19.17937 -18.32258 -17.73917 -17.59508 -17.25131 -15.87969 -15.14879 -14.84523 -14.52057 -14.00050 -13.87811 -13.54228 -13.48395 -13.43637 -12.85742 -12.64591 -12.63502 -12.45436 -12.07542 -11.92551 -11.55640 -10.88434 -10.67418 -10.63588 -10.48384 -10.12471 -9.98336 -9.14278 -8.92308 -7.93836 -7.57985 -7.01036 -4.92777 2.96161 3.56835 3.63702 3.69883 4.04163 4.25061 4.28065 4.49386 4.57559 4.75090 4.93024 5.01395 5.16725 5.34362 5.36192 5.48167 5.75560 5.87205 5.98044 5.98983 6.14365 6.32453 6.34552 6.43566 6.68282 7.22654 7.73457 7.74729 8.09895 8.82518 8.94744 10.02610 10.32060 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.007799 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.486033 B = 3589.488489 C = 4328.289237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.063 3.937 3 Si 1.117 2.883 4 H -0.288 1.288 5 H -0.320 1.320 6 H -0.272 1.272 7 C -0.598 4.598 8 H 0.077 0.923 9 C 0.553 3.447 10 O -0.612 6.612 11 N -0.631 5.631 12 C 0.117 3.883 13 C -0.133 4.133 14 C -0.108 4.108 15 C 0.064 3.936 16 H 0.075 0.925 17 O -0.383 6.383 18 C 0.403 3.597 19 F -0.201 7.201 20 F -0.211 7.211 21 C 0.099 3.901 22 H 0.277 0.723 23 H 0.097 0.903 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.164 0.836 30 H 0.057 0.943 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.566 -10.042 1.606 16.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.155 4.155 3 Si 0.949 3.051 4 H -0.215 1.215 5 H -0.251 1.251 6 H -0.198 1.198 7 C -0.634 4.634 8 H 0.095 0.905 9 C 0.363 3.637 10 O -0.504 6.504 11 N -0.367 5.367 12 C -0.007 4.007 13 C -0.171 4.171 14 C -0.146 4.146 15 C 0.006 3.994 16 H 0.094 0.906 17 O -0.304 6.304 18 C 0.311 3.689 19 F -0.183 7.183 20 F -0.194 7.194 21 C -0.025 4.025 22 H 0.088 0.912 23 H 0.115 0.885 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.180 0.820 30 H 0.075 0.925 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.689 -8.083 1.763 15.147 hybrid contribution -0.048 -1.875 0.225 1.889 sum 12.641 -9.958 1.988 16.214 Atomic orbital electron populations 1.70631 1.07616 1.32090 1.35672 1.27099 0.95283 1.04853 0.88239 0.82678 0.73492 0.71008 0.77949 1.21489 1.25122 1.19805 1.22106 0.90900 0.96594 1.53776 0.90509 1.18476 0.88196 0.80469 0.76519 1.90243 1.72033 1.32407 1.55679 1.47769 1.03914 1.09467 1.75579 1.21530 0.99333 0.83629 0.96161 1.21964 0.94173 0.99698 1.01297 1.21543 0.95771 0.94971 1.02291 1.22942 0.77586 0.97927 1.00913 0.90641 1.88354 1.22680 1.62111 1.57268 1.23117 0.97240 0.74422 0.74115 1.93125 1.94725 1.37503 1.92953 1.93047 1.91575 1.92296 1.42433 1.21849 0.83605 0.99519 0.97570 0.91165 0.88517 0.93200 0.91441 0.90647 0.91503 0.90993 0.81986 0.92521 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.95 13.64 55.55 0.76 -23.19 16 2 C 0.06 1.82 5.52 -17.37 -0.10 1.72 16 3 Si 1.12 29.72 26.46 -169.99 -4.50 25.22 16 4 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 5 H -0.32 -8.12 7.11 56.52 0.40 -7.72 16 6 H -0.27 -7.45 6.30 56.52 0.36 -7.10 16 7 C -0.60 -16.75 9.26 -35.63 -0.33 -17.08 16 8 H 0.08 2.07 5.89 -52.49 -0.31 1.76 16 9 C 0.55 15.00 7.37 -12.98 -0.10 14.91 16 10 O -0.61 -18.05 11.48 5.21 0.06 -17.99 16 11 N -0.63 -13.96 2.97 -174.17 -0.52 -14.48 16 12 C 0.12 2.10 6.31 -3.71 -0.02 2.08 16 13 C -0.13 -1.91 6.08 -26.61 -0.16 -2.08 16 14 C -0.11 -1.48 5.53 -26.69 -0.15 -1.63 16 15 C 0.06 1.04 2.56 -26.38 -0.07 0.97 16 16 H 0.08 1.35 7.20 -51.93 -0.37 0.97 16 17 O -0.38 -5.41 10.30 -35.23 -0.36 -5.77 16 18 C 0.40 4.97 6.26 101.05 0.63 5.60 16 19 F -0.20 -3.16 15.57 2.25 0.04 -3.12 16 20 F -0.21 -2.94 16.63 2.25 0.04 -2.90 16 21 C 0.10 1.93 5.87 -3.49 -0.02 1.91 16 22 H 0.28 7.63 8.72 -40.82 -0.36 7.27 16 23 H 0.10 1.87 5.37 -51.93 -0.28 1.60 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.16 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.10 2.14 5.56 -51.93 -0.29 1.85 16 LS Contribution 262.07 15.07 3.95 3.95 Total: -1.00 -32.62 262.07 -4.25 -36.88 By element: Atomic # 1 Polarization: -1.60 SS G_CDS: -3.41 Total: -5.00 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -0.31 Total: 6.40 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.24 Total: -37.67 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.30 Total: -23.76 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.07 Total: -6.03 kcal Atomic # 14 Polarization: 29.72 SS G_CDS: -4.50 Total: 25.22 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.62 -4.25 -36.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614021933.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.820 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds