Wall clock time and date at job start Mon Mar 30 2020 03:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86803 * 119.99993 * 2 1 4 4 H 1.48503 * 109.46941 * 90.00667 * 3 2 1 5 5 H 1.48496 * 109.47213 * 330.00182 * 3 2 1 6 6 H 1.48498 * 109.47038 * 209.99859 * 3 2 1 7 7 C 1.40057 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00269 * 10.21941 * 7 2 1 9 9 C 1.46376 * 119.99540 * 190.22459 * 7 2 1 10 10 O 1.21678 * 120.00404 * 9.31056 * 9 7 2 11 11 N 1.34781 * 119.99722 * 189.30763 * 9 7 2 12 12 C 1.46921 * 120.62836 * 354.75287 * 11 9 7 13 13 C 1.53196 * 108.77650 * 233.58467 * 12 11 9 14 14 C 1.53041 * 109.30913 * 305.36408 * 13 12 11 15 15 C 1.53045 * 109.53475 * 61.36755 * 14 13 12 16 16 H 1.09005 * 109.49720 * 58.58477 * 15 14 13 17 17 O 1.42907 * 109.49434 * 178.64845 * 15 14 13 18 18 C 1.42902 * 113.99859 * 210.00069 * 17 15 14 19 19 F 1.39905 * 109.46903 * 300.00205 * 18 17 15 20 20 F 1.39896 * 109.47162 * 59.99658 * 18 17 15 21 21 C 1.46923 * 120.63064 * 174.47134 * 11 9 7 22 22 H 0.96995 * 120.00608 * 174.89682 * 1 2 3 23 23 H 1.09001 * 109.59129 * 353.37149 * 12 11 9 24 24 H 1.09001 * 109.58656 * 113.65720 * 12 11 9 25 25 H 1.08996 * 109.49832 * 65.31590 * 13 12 11 26 26 H 1.09005 * 109.49972 * 185.41791 * 13 12 11 27 27 H 1.09005 * 109.45840 * 181.38456 * 14 13 12 28 28 H 1.08996 * 109.46591 * 301.35608 * 14 13 12 29 29 H 1.08995 * 109.47021 * 179.97438 * 18 17 15 30 30 H 1.08999 * 109.58711 * 246.20016 * 21 11 9 31 31 H 1.09000 * 109.58494 * 6.63321 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4883 2.0463 1.4001 5 1 1.4381 2.6527 -0.7000 6 1 3.5382 1.4402 -0.7000 7 6 2.0069 -1.2130 -0.0005 8 1 1.4798 -2.1407 -0.1669 9 6 3.4532 -1.2231 0.2245 10 8 4.0210 -0.2068 0.5785 11 7 4.1560 -2.3581 0.0396 12 6 3.4716 -3.6194 -0.2757 13 6 3.9157 -4.6862 0.7300 14 6 5.4432 -4.7817 0.7250 15 6 6.0413 -3.4386 1.1498 16 1 5.6771 -3.1760 2.1431 17 8 7.4666 -3.5379 1.1752 18 6 8.0917 -2.6849 2.1363 19 9 7.7757 -1.3519 1.8521 20 9 7.6322 -3.0100 3.4171 21 6 5.6216 -2.3565 0.1434 22 1 -0.4851 -0.8366 -0.0747 23 1 2.3931 -3.4774 -0.2054 24 1 3.7335 -3.9347 -1.2857 25 1 3.5716 -4.4119 1.7271 26 1 3.4901 -5.6499 0.4499 27 1 5.7608 -5.5574 1.4218 28 1 5.7882 -5.0316 -0.2783 29 1 9.1724 -2.8196 2.0933 30 1 6.0573 -2.5723 -0.8322 31 1 5.9622 -1.3809 0.4904 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614021933.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:49 Heat of formation + Delta-G solvation = -234.231016 kcal Electronic energy + Delta-G solvation = -19183.246929 eV Core-core repulsion = 15712.317276 eV Total energy + Delta-G solvation = -3470.929652 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.07709 -48.20582 -40.82975 -39.09846 -37.22620 -35.14382 -33.32079 -31.64341 -28.52076 -26.49653 -25.96091 -23.85637 -22.35684 -20.98424 -19.60817 -19.10493 -18.74896 -18.67330 -17.73682 -16.89114 -16.36789 -15.87156 -15.57268 -15.20515 -15.11520 -14.98482 -14.69293 -14.58701 -14.24419 -14.00582 -13.83655 -13.75499 -13.24170 -12.88745 -12.72484 -12.26523 -12.10471 -12.02890 -11.80960 -11.43059 -11.22020 -11.10668 -10.05683 -9.37241 -9.22238 -7.12290 1.40552 1.50625 1.87751 1.94856 2.12936 2.35785 2.60155 2.79255 3.24277 3.55453 3.59979 3.80216 3.89350 3.90392 4.07834 4.10074 4.47485 4.56111 4.64052 4.77616 4.88746 4.91172 5.02816 5.19147 5.37883 5.47529 5.56859 5.84782 6.07000 6.63427 6.97897 7.93452 8.11059 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.007799 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.486033 B = 3589.488489 C = 4328.289237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.032 3.968 3 Si 1.147 2.853 4 H -0.295 1.295 5 H -0.301 1.301 6 H -0.289 1.289 7 C -0.612 4.612 8 H 0.081 0.919 9 C 0.546 3.454 10 O -0.643 6.643 11 N -0.633 5.633 12 C 0.109 3.891 13 C -0.124 4.124 14 C -0.101 4.101 15 C 0.072 3.928 16 H 0.053 0.947 17 O -0.377 6.377 18 C 0.393 3.607 19 F -0.225 7.225 20 F -0.222 7.222 21 C 0.097 3.903 22 H 0.279 0.721 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.114 0.886 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.224 0.776 30 H 0.074 0.926 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.926 -12.050 1.316 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.183 4.183 3 Si 0.977 3.023 4 H -0.223 1.223 5 H -0.231 1.231 6 H -0.217 1.217 7 C -0.648 4.648 8 H 0.099 0.901 9 C 0.354 3.646 10 O -0.538 6.538 11 N -0.367 5.367 12 C -0.013 4.013 13 C -0.162 4.162 14 C -0.139 4.139 15 C 0.014 3.986 16 H 0.071 0.929 17 O -0.298 6.298 18 C 0.302 3.698 19 F -0.207 7.207 20 F -0.204 7.204 21 C -0.027 4.027 22 H 0.090 0.910 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.070 0.930 26 H 0.132 0.868 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.240 0.760 30 H 0.092 0.908 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.045 -10.136 1.463 17.383 hybrid contribution -0.391 -1.316 0.314 1.408 sum 13.655 -11.453 1.778 17.910 Atomic orbital electron populations 1.70632 1.07708 1.32332 1.36804 1.27674 0.95691 1.06532 0.88371 0.82263 0.72349 0.70302 0.77356 1.22270 1.23056 1.21654 1.22291 0.91872 0.96715 1.53915 0.90098 1.18481 0.88324 0.81496 0.76336 1.90215 1.72625 1.34071 1.56859 1.47715 1.05224 1.09573 1.74228 1.21792 0.98031 0.82779 0.98689 1.21914 0.95081 0.99993 0.99212 1.21554 0.94675 0.93726 1.03910 1.22700 0.79060 0.98302 0.98558 0.92873 1.88360 1.21146 1.62283 1.57990 1.24143 0.99602 0.72912 0.73145 1.93085 1.95059 1.39452 1.93092 1.93025 1.91947 1.92241 1.43178 1.21970 0.81872 0.99440 0.99449 0.90987 0.90464 0.90826 0.93044 0.86759 0.88978 0.89268 0.75973 0.90778 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.81 13.64 21.84 0.30 -48.51 16 2 C 0.03 1.88 5.52 85.31 0.47 2.35 16 3 Si 1.15 61.12 26.46 68.60 1.81 62.93 16 4 H -0.30 -15.92 7.11 99.48 0.71 -15.22 16 5 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 6 H -0.29 -16.11 6.30 99.48 0.63 -15.48 16 7 C -0.61 -34.66 9.26 24.83 0.23 -34.43 16 8 H 0.08 4.41 5.89 -2.92 -0.02 4.40 16 9 C 0.55 29.95 7.37 86.36 0.64 30.59 16 10 O -0.64 -38.79 11.48 -4.28 -0.05 -38.84 16 11 N -0.63 -27.69 2.97 -823.16 -2.44 -30.13 16 12 C 0.11 3.73 6.31 86.36 0.55 4.27 16 13 C -0.12 -3.19 6.08 30.67 0.19 -3.00 16 14 C -0.10 -2.39 5.53 30.62 0.17 -2.22 16 15 C 0.07 2.20 2.56 30.82 0.08 2.28 16 16 H 0.05 1.86 7.20 -2.38 -0.02 1.85 16 17 O -0.38 -9.61 10.30 -148.98 -1.53 -11.14 16 18 C 0.39 8.80 6.26 113.37 0.71 9.51 16 19 F -0.22 -6.95 15.57 44.97 0.70 -6.25 16 20 F -0.22 -5.82 16.63 44.97 0.75 -5.07 16 21 C 0.10 3.68 5.87 86.51 0.51 4.19 16 22 H 0.28 15.44 8.72 -92.71 -0.81 14.63 16 23 H 0.08 2.94 5.37 -2.39 -0.01 2.92 16 24 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 27 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.22 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.06 2.92 5.56 -2.39 -0.01 2.91 16 Total: -1.00 -71.64 262.07 4.11 -67.53 By element: Atomic # 1 Polarization: -5.10 SS G_CDS: 1.04 Total: -4.06 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 3.53 Total: 13.55 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -2.14 Total: -78.65 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -1.58 Total: -49.99 kcal Atomic # 9 Polarization: -12.77 SS G_CDS: 1.45 Total: -11.32 kcal Atomic # 14 Polarization: 61.12 SS G_CDS: 1.81 Total: 62.93 kcal Total: -71.64 4.11 -67.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614021933.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.700 kcal (2) G-P(sol) polarization free energy of solvation -71.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds