Wall clock time and date at job start Mon Mar 30 2020 03:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86800 * 119.99763 * 2 1 4 4 H 1.48496 * 109.47277 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47451 * 300.00016 * 3 2 1 6 6 H 1.48509 * 109.47045 * 59.99992 * 3 2 1 7 7 C 1.39915 * 120.00381 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00435 * 167.74730 * 7 2 1 9 9 C 1.41321 * 119.99867 * 347.75186 * 7 2 1 10 10 C 1.40779 * 120.21200 * 330.98167 * 9 7 2 11 11 C 1.36550 * 119.77291 * 180.29686 * 10 9 7 12 12 C 1.38961 * 120.21867 * 359.95526 * 11 10 9 13 13 F 1.35102 * 119.78251 * 180.02562 * 12 11 10 14 14 C 1.38924 * 120.44026 * 0.04376 * 12 11 10 15 15 C 1.36577 * 120.22047 * 359.97438 * 14 12 11 16 16 C 1.50703 * 120.11346 * 179.97438 * 15 14 12 17 17 H 1.09003 * 110.85751 * 178.25190 * 16 15 14 18 18 C 1.54475 * 110.96987 * 302.04687 * 16 15 14 19 19 N 1.46755 * 105.47779 * 143.53440 * 18 16 15 20 20 C 1.34425 * 111.29894 * 342.98512 * 19 18 16 21 21 O 1.21287 * 124.94085 * 180.37556 * 20 19 18 22 22 C 1.51277 * 110.11550 * 0.40254 * 20 19 18 23 23 H 0.96999 * 120.00585 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.11996 * 0.25538 * 10 9 7 25 25 H 1.07994 * 119.89127 * 179.97438 * 11 10 9 26 26 H 1.08001 * 119.88538 * 179.97438 * 14 12 11 27 27 H 1.09009 * 110.24578 * 262.53209 * 18 16 15 28 28 H 1.09000 * 110.24791 * 24.53008 * 18 16 15 29 29 H 0.97003 * 124.35268 * 162.99917 * 19 18 16 30 30 H 1.09000 * 110.48923 * 257.58302 * 22 20 19 31 31 H 1.08996 * 110.48424 * 134.93375 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7024 1.3465 0.0006 5 1 1.8837 2.3965 -1.2125 6 1 1.8836 2.3965 1.2126 7 6 2.0081 -1.2117 0.0005 8 1 3.0697 -1.2224 -0.1979 9 6 1.3257 -2.4215 0.2607 10 6 0.1812 -2.4271 1.0804 11 6 -0.4677 -3.6022 1.3308 12 6 -0.0024 -4.7895 0.7788 13 9 -0.6516 -5.9470 1.0319 14 6 1.1261 -4.7943 -0.0314 15 6 1.7892 -3.6295 -0.2934 16 6 3.0135 -3.6375 -1.1721 17 1 3.4026 -2.6280 -1.3048 18 6 4.0980 -4.5774 -0.6006 19 7 4.7353 -5.1961 -1.7688 20 6 3.9754 -5.0593 -2.8692 21 8 4.2623 -5.4836 -3.9686 22 6 2.7108 -4.2986 -2.5368 23 1 -0.4851 0.8400 -0.0004 24 1 -0.1820 -1.5053 1.5104 25 1 -1.3457 -3.6088 1.9597 26 1 1.4802 -5.7224 -0.4554 27 1 4.8302 -4.0057 -0.0301 28 1 3.6416 -5.3414 0.0289 29 1 5.5944 -5.6462 -1.7494 30 1 1.8660 -4.9820 -2.4505 31 1 2.5126 -3.5391 -3.2930 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687745201.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:16 Heat of formation + Delta-G solvation = -89.956988 kcal Electronic energy + Delta-G solvation = -17768.486364 eV Core-core repulsion = 14734.582128 eV Total energy + Delta-G solvation = -3033.904236 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.27823 -41.39653 -39.47785 -37.27120 -35.42371 -33.46398 -31.31266 -30.32145 -28.23284 -26.80212 -24.12139 -22.78495 -21.47137 -21.05323 -19.21882 -18.35847 -18.16120 -17.05306 -16.68325 -16.31242 -16.04516 -15.91050 -15.65451 -14.69356 -14.63858 -14.50908 -14.14300 -13.87363 -13.63701 -13.25905 -13.19248 -12.79532 -12.70326 -12.45514 -12.09535 -11.86468 -11.50075 -11.25685 -11.04740 -10.88355 -10.04176 -9.44115 -9.12703 -8.60751 -6.30584 0.79160 0.94507 1.46899 1.51283 1.56886 1.59095 2.23848 2.48759 2.70342 3.47305 3.51714 3.91645 4.00354 4.04189 4.21235 4.32720 4.42676 4.70925 4.76824 4.94030 5.03520 5.04880 5.19459 5.33192 5.36535 5.62143 5.80180 5.85556 5.96530 6.04352 6.09565 6.29945 6.64226 6.92755 6.97396 7.28015 8.35646 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.009325 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.841676 B = 3002.119850 C = 4434.078700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.036 3.964 3 Si 0.975 3.025 4 H -0.251 1.251 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.472 4.472 8 H 0.096 0.904 9 C 0.092 3.908 10 C -0.157 4.157 11 C -0.133 4.133 12 C -0.059 4.059 13 F -0.173 7.173 14 C -0.105 4.105 15 C -0.159 4.159 16 C -0.034 4.034 17 H 0.100 0.900 18 C 0.111 3.889 19 N -0.714 5.714 20 C 0.520 3.480 21 O -0.588 6.588 22 C -0.147 4.147 23 H 0.287 0.713 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.123 0.877 27 H 0.102 0.898 28 H 0.079 0.921 29 H 0.418 0.582 30 H 0.102 0.898 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.157 -1.761 1.591 6.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.174 1.174 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.501 4.501 8 H 0.114 0.886 9 C 0.089 3.911 10 C -0.177 4.177 11 C -0.152 4.152 12 C -0.079 4.079 13 F -0.152 7.152 14 C -0.124 4.124 15 C -0.161 4.161 16 C -0.052 4.052 17 H 0.118 0.882 18 C -0.013 4.013 19 N -0.369 5.369 20 C 0.308 3.692 21 O -0.469 6.469 22 C -0.187 4.187 23 H 0.098 0.902 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.140 0.860 27 H 0.120 0.880 28 H 0.097 0.903 29 H 0.258 0.742 30 H 0.121 0.879 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.983 -1.805 1.051 6.337 hybrid contribution -0.108 0.379 0.171 0.430 sum 5.874 -1.426 1.222 6.167 Atomic orbital electron populations 1.69850 1.08957 1.30527 1.35826 1.26696 0.95388 1.04394 0.91480 0.85233 0.79923 0.76769 0.78374 1.17377 1.19976 1.19622 1.19883 0.97078 0.90703 1.42412 0.88609 1.17822 0.91560 0.92923 0.88748 1.20954 0.99404 0.96019 1.01313 1.20650 1.00600 0.92269 1.01679 1.17520 0.98711 0.81061 1.10574 1.91289 1.81614 1.48241 1.94101 1.20268 0.94725 0.98567 0.98811 1.19066 1.00397 0.92486 1.04161 1.20733 0.92813 1.00003 0.91676 0.88158 1.22362 0.95621 0.96122 0.87216 1.46170 1.23055 1.57920 1.09723 1.21131 0.86314 0.78330 0.83426 1.90685 1.76986 1.53942 1.25289 1.22481 0.96273 1.00636 0.99291 0.90187 0.87022 0.87120 0.85957 0.88017 0.90290 0.74187 0.87949 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -39.00 10.93 21.82 0.24 -38.76 16 2 C 0.04 1.57 5.22 85.25 0.45 2.02 16 3 Si 0.98 33.92 29.58 68.60 2.03 35.95 16 4 H -0.25 -8.28 7.11 99.48 0.71 -7.57 16 5 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 6 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 7 C -0.47 -21.04 8.22 23.43 0.19 -20.85 16 8 H 0.10 3.92 6.42 -2.91 -0.02 3.90 16 9 C 0.09 4.18 5.54 -21.29 -0.12 4.06 16 10 C -0.16 -7.41 8.62 22.50 0.19 -7.22 16 11 C -0.13 -5.87 9.96 22.05 0.22 -5.65 16 12 C -0.06 -2.52 7.32 22.61 0.17 -2.35 16 13 F -0.17 -7.23 17.26 44.97 0.78 -6.46 16 14 C -0.10 -4.07 7.95 22.05 0.18 -3.89 16 15 C -0.16 -6.22 5.00 -19.64 -0.10 -6.32 16 16 C -0.03 -1.07 3.19 -10.48 -0.03 -1.10 16 17 H 0.10 3.33 5.88 -2.39 -0.01 3.31 16 18 C 0.11 2.74 7.26 86.83 0.63 3.37 16 19 N -0.71 -17.61 6.24 -459.81 -2.87 -20.48 16 20 C 0.52 16.57 8.43 87.90 0.74 17.31 16 21 O -0.59 -22.97 18.03 -3.05 -0.05 -23.03 16 22 C -0.15 -4.62 6.31 30.59 0.19 -4.43 16 23 H 0.29 12.44 8.30 -92.71 -0.77 11.67 16 24 H 0.11 5.53 6.28 -2.91 -0.02 5.51 16 25 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 26 H 0.12 4.16 7.30 -2.91 -0.02 4.14 16 27 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.08 1.94 6.99 -2.39 -0.02 1.93 16 29 H 0.42 8.22 8.96 -92.71 -0.83 7.38 16 30 H 0.10 3.26 6.78 -2.39 -0.02 3.24 16 31 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -55.25 267.65 3.18 -52.07 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.35 Total: 25.74 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 2.71 Total: -25.04 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -2.63 Total: -59.24 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.05 Total: -23.03 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.78 Total: -6.46 kcal Atomic # 14 Polarization: 33.92 SS G_CDS: 2.03 Total: 35.95 kcal Total: -55.25 3.18 -52.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687745201.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.891 kcal (2) G-P(sol) polarization free energy of solvation -55.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds