Wall clock time and date at job start Mon Mar 30 2020 03:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00532 * 2 1 4 4 H 1.48499 * 109.47148 * 270.00574 * 3 2 1 5 5 H 1.48499 * 109.46896 * 29.99928 * 3 2 1 6 6 H 1.48493 * 109.47440 * 149.99807 * 3 2 1 7 7 C 1.37876 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00439 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99705 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.85877 * 56.21389 * 9 7 2 11 11 C 1.54625 * 110.97197 * 292.37779 * 9 7 2 12 12 C 1.51283 * 104.19661 * 266.68026 * 11 9 7 13 13 O 1.21286 * 124.93975 * 163.77896 * 12 11 9 14 14 N 1.34415 * 110.11445 * 343.74896 * 12 11 9 15 15 C 1.46760 * 111.30439 * 359.58778 * 14 12 11 16 16 H 1.09000 * 110.32083 * 136.05582 * 15 14 12 17 17 C 1.50694 * 110.24881 * 258.02094 * 15 14 12 18 18 C 1.38265 * 119.98868 * 216.04719 * 17 15 14 19 19 C 1.38226 * 120.05353 * 180.02562 * 18 17 15 20 20 C 1.38216 * 120.02514 * 0.02562 * 19 18 17 21 21 C 1.38436 * 119.97572 * 0.02562 * 20 19 18 22 22 F 1.35104 * 120.02854 * 179.97438 * 21 20 19 23 23 C 1.38177 * 119.98852 * 36.34541 * 17 15 14 24 24 H 0.97000 * 119.99806 * 359.97438 * 1 2 3 25 25 H 1.08998 * 110.48499 * 25.36037 * 11 9 7 26 26 H 1.08994 * 110.49017 * 148.00080 * 11 9 7 27 27 H 0.97007 * 124.34737 * 179.59778 * 14 12 11 28 28 H 1.08001 * 119.97583 * 0.02562 * 18 17 15 29 29 H 1.08001 * 119.98838 * 180.02562 * 19 18 17 30 30 H 1.07996 * 120.01591 * 179.97438 * 20 19 18 31 31 H 1.07999 * 120.01627 * 359.97437 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.5660 -2.5518 -0.8468 11 6 0.4987 -2.7038 1.3348 12 6 1.4612 -3.5045 2.1839 13 8 1.3801 -3.6391 3.3866 14 7 2.4190 -4.0457 1.4115 15 6 2.2237 -3.6992 -0.0012 16 1 3.1727 -3.4152 -0.4560 17 6 1.6173 -4.8616 -0.7442 18 6 1.9908 -5.1172 -2.0507 19 6 1.4351 -6.1827 -2.7337 20 6 0.5048 -6.9937 -2.1113 21 6 0.1293 -6.7382 -0.8036 22 9 -0.7803 -7.5299 -0.1944 23 6 0.6838 -5.6679 -0.1217 24 1 -0.4850 0.8401 0.0004 25 1 0.2849 -1.7432 1.8033 26 1 -0.4225 -3.2632 1.1719 27 1 3.1458 -4.5948 1.7450 28 1 2.7173 -4.4838 -2.5380 29 1 1.7278 -6.3817 -3.7541 30 1 0.0704 -7.8259 -2.6452 31 1 0.3889 -5.4655 0.8974 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709908219.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:45 Heat of formation + Delta-G solvation = -81.839727 kcal Electronic energy + Delta-G solvation = -17879.640671 eV Core-core repulsion = 14846.088425 eV Total energy + Delta-G solvation = -3033.552246 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.88564 -41.62224 -39.59910 -37.46602 -34.86727 -32.22779 -31.70131 -31.44396 -28.41183 -26.69808 -23.60505 -23.28486 -21.70087 -21.28060 -18.90951 -18.59395 -17.82846 -17.11748 -17.04660 -16.65750 -16.55124 -16.16714 -15.72313 -14.83693 -14.70662 -14.56933 -14.21036 -13.98187 -13.60957 -13.33184 -12.89664 -12.80360 -12.66941 -12.52961 -12.33498 -12.10855 -11.57745 -11.09971 -10.92651 -10.45928 -10.12896 -9.83602 -9.56556 -8.15610 -6.27333 0.23221 0.29432 1.44521 1.47964 1.55473 1.65250 2.43063 2.48023 2.74885 3.16764 3.28457 3.75372 3.77502 3.92882 4.14701 4.23723 4.34526 4.45973 4.57875 4.69017 4.85135 4.93577 5.14911 5.20397 5.38548 5.45486 5.54087 5.62181 5.78762 5.98811 6.00811 6.09128 6.21270 6.81160 7.36117 7.43089 8.92488 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.007154 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.144103 B = 3912.998963 C = 4421.216617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.019 3.981 3 Si 0.951 3.049 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.529 4.529 8 H 0.067 0.933 9 C 0.059 3.941 10 H 0.040 0.960 11 C -0.138 4.138 12 C 0.526 3.474 13 O -0.597 6.597 14 N -0.705 5.705 15 C 0.177 3.823 16 H 0.115 0.885 17 C -0.067 4.067 18 C -0.116 4.116 19 C -0.080 4.080 20 C -0.154 4.154 21 C 0.074 3.926 22 F -0.153 7.153 23 C -0.158 4.158 24 H 0.263 0.737 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.413 0.587 28 H 0.155 0.845 29 H 0.172 0.828 30 H 0.158 0.842 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.498 -11.183 -8.331 14.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.181 4.181 3 Si 0.777 3.223 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.567 4.567 8 H 0.085 0.915 9 C 0.040 3.960 10 H 0.058 0.942 11 C -0.179 4.179 12 C 0.315 3.685 13 O -0.479 6.479 14 N -0.358 5.358 15 C 0.072 3.928 16 H 0.132 0.868 17 C -0.068 4.068 18 C -0.135 4.135 19 C -0.097 4.097 20 C -0.173 4.173 21 C 0.055 3.945 22 F -0.132 7.132 23 C -0.177 4.177 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.252 0.748 28 H 0.172 0.828 29 H 0.190 0.810 30 H 0.176 0.824 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.188 -11.086 -7.741 14.155 hybrid contribution -0.018 0.748 0.822 1.112 sum 4.170 -10.338 -6.919 13.120 Atomic orbital electron populations 1.70051 1.07221 1.27641 1.50254 1.25687 0.95546 1.02370 0.94535 0.85651 0.78632 0.79552 0.78434 1.19437 1.21767 1.19478 1.21372 0.93373 0.90596 1.51328 0.91479 1.19558 0.92635 0.91333 0.92435 0.94160 1.22307 0.97100 0.99114 0.99392 1.21312 0.82910 0.77875 0.86441 1.90606 1.77037 1.64722 1.15574 1.46062 1.28771 1.52403 1.08534 1.20857 1.00777 0.91682 0.79480 0.86760 1.20148 0.95832 0.95158 0.95695 1.21412 1.00994 0.98240 0.92826 1.21399 0.94229 0.92913 1.01203 1.21436 1.00491 1.02940 0.92384 1.17947 0.91744 0.91636 0.93216 1.91451 1.65137 1.72917 1.83727 1.20896 0.99731 0.96376 1.00730 0.92808 0.90701 0.90786 0.74797 0.82782 0.81043 0.82444 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.87 12.39 21.45 0.27 -49.61 16 2 C 0.02 0.97 5.15 84.65 0.44 1.41 16 3 Si 0.95 41.08 29.54 68.60 2.03 43.11 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.53 -25.93 8.48 25.60 0.22 -25.71 16 8 H 0.07 3.15 7.63 -2.91 -0.02 3.13 16 9 C 0.06 2.62 2.48 -10.48 -0.03 2.59 16 10 H 0.04 1.92 7.89 -2.39 -0.02 1.90 16 11 C -0.14 -6.46 5.58 30.59 0.17 -6.29 16 12 C 0.53 23.38 7.31 87.90 0.64 24.03 16 13 O -0.60 -30.18 18.03 -3.05 -0.05 -30.24 16 14 N -0.71 -25.08 5.33 -442.98 -2.36 -27.44 16 15 C 0.18 6.05 3.31 44.70 0.15 6.19 16 16 H 0.11 3.49 7.70 -2.39 -0.02 3.47 16 17 C -0.07 -2.01 4.90 -19.87 -0.10 -2.10 16 18 C -0.12 -2.70 9.68 22.27 0.22 -2.48 16 19 C -0.08 -1.50 10.04 22.26 0.22 -1.28 16 20 C -0.15 -3.35 10.03 22.31 0.22 -3.13 16 21 C 0.07 2.13 7.30 22.38 0.16 2.30 16 22 F -0.15 -4.74 17.27 44.97 0.78 -3.96 16 23 C -0.16 -5.11 9.02 22.31 0.20 -4.91 16 24 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 25 H 0.07 4.02 7.01 -2.39 -0.02 4.00 16 26 H 0.07 3.33 8.02 -2.39 -0.02 3.31 16 27 H 0.41 12.31 8.96 -92.70 -0.83 11.48 16 28 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 29 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 30 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 31 H 0.11 3.86 6.36 -2.91 -0.02 3.84 16 Total: -1.00 -62.86 273.22 3.51 -59.36 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.33 Total: 18.17 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 2.52 Total: -9.39 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -2.10 Total: -77.05 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.05 Total: -30.24 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.78 Total: -3.96 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -62.86 3.51 -59.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709908219.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.483 kcal (2) G-P(sol) polarization free energy of solvation -62.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds