Wall clock time and date at job start Mon Mar 30 2020 03:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99655 * 2 1 4 4 H 1.48498 * 109.46957 * 269.99694 * 3 2 1 5 5 H 1.48501 * 109.47396 * 29.99476 * 3 2 1 6 6 H 1.48500 * 109.47122 * 149.99928 * 3 2 1 7 7 C 1.37872 * 120.00371 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99653 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00287 * 180.02562 * 7 2 1 10 10 H 1.08991 * 110.86209 * 56.20809 * 9 7 2 11 11 C 1.54631 * 110.99815 * 292.39603 * 9 7 2 12 12 C 1.51279 * 104.19924 * 266.66474 * 11 9 7 13 13 O 1.21283 * 124.94393 * 163.72684 * 12 11 9 14 14 N 1.34629 * 110.14792 * 343.77024 * 12 11 9 15 15 C 1.46761 * 111.17972 * 359.55523 * 14 12 11 16 16 H 1.09003 * 110.24151 * 136.09870 * 15 14 12 17 17 C 1.50694 * 110.24833 * 258.01116 * 15 14 12 18 18 C 1.38250 * 119.97505 * 217.37582 * 17 15 14 19 19 C 1.38196 * 120.02428 * 180.27926 * 18 17 15 20 20 C 1.38457 * 119.97339 * 359.50816 * 19 18 17 21 21 F 1.35103 * 120.02364 * 180.21557 * 20 19 18 22 22 C 1.38456 * 119.94977 * 0.48564 * 20 19 18 23 23 C 1.38199 * 119.97506 * 359.75344 * 22 20 19 24 24 H 0.96997 * 120.00390 * 0.02562 * 1 2 3 25 25 H 1.09000 * 110.48669 * 25.34643 * 11 9 7 26 26 H 1.09007 * 110.48249 * 147.98637 * 11 9 7 27 27 H 0.96996 * 124.46510 * 179.53350 * 14 12 11 28 28 H 1.08002 * 119.98396 * 359.97438 * 18 17 15 29 29 H 1.08004 * 120.00978 * 179.72210 * 19 18 17 30 30 H 1.08000 * 120.01302 * 179.76430 * 22 20 19 31 31 H 1.07999 * 119.98943 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 1 3.8993 -0.6273 0.8475 11 6 4.0661 -0.6442 -1.3335 12 6 4.2791 -1.8777 -2.1830 13 8 4.4364 -1.8743 -3.3856 14 7 4.2678 -2.9803 -1.4106 15 6 4.0645 -2.6364 0.0016 16 1 3.3436 -3.3165 0.4553 17 6 5.3736 -2.6928 0.7458 18 6 5.4105 -3.1686 2.0434 19 6 6.6095 -3.2154 2.7288 20 6 7.7758 -2.7952 2.1121 21 9 8.9492 -2.8446 2.7799 22 6 7.7376 -2.3190 0.8126 23 6 6.5366 -2.2685 0.1307 24 1 -0.4850 0.8400 -0.0004 25 1 3.3415 0.0215 -1.8024 26 1 5.0111 -0.1262 -1.1694 27 1 4.3792 -3.8846 -1.7432 28 1 4.5011 -3.4992 2.5231 29 1 6.6374 -3.5829 3.7440 30 1 8.6461 -1.9873 0.3319 31 1 6.5065 -1.8967 -0.8828 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709910388.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:33 Heat of formation + Delta-G solvation = -58.422078 kcal Electronic energy + Delta-G solvation = -17843.380783 eV Core-core repulsion = 14810.844003 eV Total energy + Delta-G solvation = -3032.536780 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.86275 -40.28926 -38.40787 -35.94641 -32.93544 -31.15886 -30.68809 -30.51329 -26.79507 -24.90287 -22.94039 -21.77676 -20.17079 -19.85049 -17.72669 -17.21481 -16.89665 -16.10200 -15.55849 -15.45935 -14.89248 -14.38017 -14.31194 -13.64249 -13.42895 -13.30914 -13.08919 -12.52426 -12.39793 -12.22569 -11.96271 -11.57819 -11.04827 -10.91009 -10.80998 -10.28562 -9.89331 -9.36105 -9.25443 -9.06170 -8.74397 -8.66851 -8.39753 -6.24865 -4.28302 1.18625 1.28765 3.17512 3.20418 3.27593 3.30372 3.59530 3.97707 4.25978 4.29703 4.77964 4.88977 4.95026 5.03604 5.22221 5.36214 5.37353 5.58306 5.87044 5.96771 6.05061 6.11063 6.15768 6.19158 6.28918 6.56300 6.72840 6.93187 6.99233 7.37913 7.47666 7.54052 8.27346 8.76147 8.84807 9.34425 10.87120 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.023527 B = 0.007462 C = 0.006652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.857800 B = 3751.487220 C = 4208.124393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.078 3.922 3 Si 0.869 3.131 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.022 3.978 10 H 0.058 0.942 11 C -0.172 4.172 12 C 0.535 3.465 13 O -0.556 6.556 14 N -0.721 5.721 15 C 0.179 3.821 16 H 0.100 0.900 17 C -0.093 4.093 18 C -0.079 4.079 19 C -0.153 4.153 20 C 0.085 3.915 21 F -0.146 7.146 22 C -0.154 4.154 23 C -0.080 4.080 24 H 0.267 0.733 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.401 0.599 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.317 -4.981 4.902 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.126 4.126 3 Si 0.696 3.304 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.184 1.184 7 C -0.557 4.557 8 H 0.098 0.902 9 C 0.002 3.998 10 H 0.076 0.924 11 C -0.212 4.212 12 C 0.324 3.676 13 O -0.435 6.435 14 N -0.374 5.374 15 C 0.073 3.927 16 H 0.118 0.882 17 C -0.095 4.095 18 C -0.098 4.098 19 C -0.172 4.172 20 C 0.066 3.934 21 F -0.125 7.125 22 C -0.173 4.173 23 C -0.098 4.098 24 H 0.077 0.923 25 H 0.117 0.883 26 H 0.098 0.902 27 H 0.239 0.761 28 H 0.156 0.844 29 H 0.151 0.849 30 H 0.149 0.851 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.236 -4.734 4.335 13.817 hybrid contribution 0.627 0.560 0.012 0.841 sum 12.863 -4.174 4.347 14.205 Atomic orbital electron populations 1.69869 1.06279 1.27370 1.49077 1.24943 0.94697 0.99034 0.93888 0.87025 0.80637 0.83826 0.78892 1.19808 1.21359 1.18396 1.20824 0.87366 0.94974 1.52547 0.90220 1.20232 0.97498 0.89127 0.92898 0.92375 1.22953 1.02008 0.96581 0.99697 1.21023 0.73114 0.86748 0.86739 1.90659 1.51473 1.87353 1.13992 1.46223 1.74048 1.08753 1.08404 1.20708 0.91198 1.00859 0.79939 0.88240 1.20557 0.96074 0.97860 0.94962 1.20936 0.97490 0.97666 0.93688 1.21097 0.91626 1.03406 1.01056 1.17711 0.81346 1.02894 0.91414 1.91471 1.46040 1.94529 1.80431 1.21094 0.99574 1.03049 0.93572 1.20883 0.91144 0.97705 1.00055 0.92268 0.88300 0.90231 0.76146 0.84405 0.84881 0.85102 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 13.96 55.43 0.77 -24.73 16 2 C 0.08 2.07 5.39 -17.82 -0.10 1.98 16 3 Si 0.87 19.90 25.09 -169.99 -4.27 15.64 16 4 H -0.27 -6.21 7.03 56.52 0.40 -5.81 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.26 -5.54 6.44 56.52 0.36 -5.18 16 7 C -0.52 -13.03 9.06 -34.44 -0.31 -13.34 16 8 H 0.08 2.17 7.87 -52.48 -0.41 1.75 16 9 C 0.02 0.44 2.01 -90.14 -0.18 0.26 16 10 H 0.06 1.18 6.74 -51.93 -0.35 0.83 16 11 C -0.17 -3.47 4.66 -26.74 -0.12 -3.60 16 12 C 0.54 10.79 7.32 -10.77 -0.08 10.72 16 13 O -0.56 -12.83 18.03 5.55 0.10 -12.73 16 14 N -0.72 -12.11 5.37 -53.83 -0.29 -12.40 16 15 C 0.18 2.96 3.31 -68.17 -0.23 2.73 16 16 H 0.10 1.60 7.68 -51.93 -0.40 1.20 16 17 C -0.09 -1.34 4.90 -104.62 -0.51 -1.85 16 18 C -0.08 -1.01 9.68 -39.59 -0.38 -1.39 16 19 C -0.15 -1.84 10.03 -39.52 -0.40 -2.24 16 20 C 0.09 1.11 7.30 -39.42 -0.29 0.82 16 21 F -0.15 -1.92 17.27 2.25 0.04 -1.88 16 22 C -0.15 -1.98 10.03 -39.52 -0.40 -2.38 16 23 C -0.08 -1.11 9.03 -39.59 -0.36 -1.47 16 24 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.10 2.21 5.71 -51.93 -0.30 1.92 16 26 H 0.08 1.41 7.95 -51.93 -0.41 1.00 16 27 H 0.40 5.77 8.96 -40.82 -0.37 5.41 16 28 H 0.14 1.52 8.05 -52.49 -0.42 1.09 16 29 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 30 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 31 H 0.13 1.83 6.28 -52.49 -0.33 1.50 16 LS Contribution 266.69 15.07 4.02 4.02 Total: -1.00 -29.61 266.69 -5.99 -35.59 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -3.01 Total: 6.24 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -3.35 Total: -9.75 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.48 Total: -37.13 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.10 Total: -12.73 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.27 Total: 15.64 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.61 -5.99 -35.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709910388.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.830 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds