Wall clock time and date at job start Mon Mar 30 2020 03:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99655 * 2 1 4 4 H 1.48498 * 109.46957 * 269.99694 * 3 2 1 5 5 H 1.48501 * 109.47396 * 29.99476 * 3 2 1 6 6 H 1.48500 * 109.47122 * 149.99928 * 3 2 1 7 7 C 1.37872 * 120.00371 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99653 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00287 * 180.02562 * 7 2 1 10 10 H 1.08991 * 110.86209 * 56.20809 * 9 7 2 11 11 C 1.54631 * 110.99815 * 292.39603 * 9 7 2 12 12 C 1.51279 * 104.19924 * 266.66474 * 11 9 7 13 13 O 1.21283 * 124.94393 * 163.72684 * 12 11 9 14 14 N 1.34629 * 110.14792 * 343.77024 * 12 11 9 15 15 C 1.46761 * 111.17972 * 359.55523 * 14 12 11 16 16 H 1.09003 * 110.24151 * 136.09870 * 15 14 12 17 17 C 1.50694 * 110.24833 * 258.01116 * 15 14 12 18 18 C 1.38250 * 119.97505 * 217.37582 * 17 15 14 19 19 C 1.38196 * 120.02428 * 180.27926 * 18 17 15 20 20 C 1.38457 * 119.97339 * 359.50816 * 19 18 17 21 21 F 1.35103 * 120.02364 * 180.21557 * 20 19 18 22 22 C 1.38456 * 119.94977 * 0.48564 * 20 19 18 23 23 C 1.38199 * 119.97506 * 359.75344 * 22 20 19 24 24 H 0.96997 * 120.00390 * 0.02562 * 1 2 3 25 25 H 1.09000 * 110.48669 * 25.34643 * 11 9 7 26 26 H 1.09007 * 110.48249 * 147.98637 * 11 9 7 27 27 H 0.96996 * 124.46510 * 179.53350 * 14 12 11 28 28 H 1.08002 * 119.98396 * 359.97438 * 18 17 15 29 29 H 1.08004 * 120.00978 * 179.72210 * 19 18 17 30 30 H 1.08000 * 120.01302 * 179.76430 * 22 20 19 31 31 H 1.07999 * 119.98943 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 1 3.8993 -0.6273 0.8475 11 6 4.0661 -0.6442 -1.3335 12 6 4.2791 -1.8777 -2.1830 13 8 4.4364 -1.8743 -3.3856 14 7 4.2678 -2.9803 -1.4106 15 6 4.0645 -2.6364 0.0016 16 1 3.3436 -3.3165 0.4553 17 6 5.3736 -2.6928 0.7458 18 6 5.4105 -3.1686 2.0434 19 6 6.6095 -3.2154 2.7288 20 6 7.7758 -2.7952 2.1121 21 9 8.9492 -2.8446 2.7799 22 6 7.7376 -2.3190 0.8126 23 6 6.5366 -2.2685 0.1307 24 1 -0.4850 0.8400 -0.0004 25 1 3.3415 0.0215 -1.8024 26 1 5.0111 -0.1262 -1.1694 27 1 4.3792 -3.8846 -1.7432 28 1 4.5011 -3.4992 2.5231 29 1 6.6374 -3.5829 3.7440 30 1 8.6461 -1.9873 0.3319 31 1 6.5065 -1.8967 -0.8828 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709910388.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:33 Heat of formation + Delta-G solvation = -78.044779 kcal Electronic energy + Delta-G solvation = -17844.231687 eV Core-core repulsion = 14810.844003 eV Total energy + Delta-G solvation = -3033.387684 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.85839 -41.70481 -39.62927 -37.50329 -34.82600 -32.37253 -32.13210 -31.71690 -28.38020 -26.51378 -23.93186 -23.05436 -21.72510 -21.36211 -19.08627 -18.69917 -18.29911 -17.26115 -16.94925 -16.55402 -16.37391 -16.01456 -15.71592 -14.99191 -14.76207 -14.52746 -14.40497 -14.04421 -13.92862 -13.47992 -13.34503 -13.10973 -12.63928 -12.58007 -11.97537 -11.81257 -11.68134 -11.22338 -10.94887 -10.70478 -10.13845 -10.01254 -9.49299 -8.28635 -6.34850 0.14708 0.31570 1.38122 1.41113 1.47913 1.62979 2.35107 2.44313 2.70164 3.04443 3.31071 3.63874 3.76329 3.80674 3.99573 4.01992 4.32985 4.39262 4.44554 4.52332 4.74635 4.96383 5.01736 5.09060 5.18780 5.27344 5.35408 5.55981 5.60643 5.93778 5.96230 6.07772 6.24929 6.72556 7.30451 7.34784 8.86712 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.023527 B = 0.007462 C = 0.006652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.857800 B = 3751.487220 C = 4208.124393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.021 3.979 3 Si 0.922 3.078 4 H -0.273 1.273 5 H -0.293 1.293 6 H -0.228 1.228 7 C -0.513 4.513 8 H 0.046 0.954 9 C 0.020 3.980 10 H 0.070 0.930 11 C -0.172 4.172 12 C 0.532 3.468 13 O -0.590 6.590 14 N -0.706 5.706 15 C 0.188 3.812 16 H 0.104 0.896 17 C -0.103 4.103 18 C -0.077 4.077 19 C -0.147 4.147 20 C 0.080 3.920 21 F -0.147 7.147 22 C -0.154 4.154 23 C -0.086 4.086 24 H 0.266 0.734 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.415 0.585 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.148 0.852 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.654 -5.129 6.129 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.178 4.178 3 Si 0.747 3.253 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.150 1.150 7 C -0.550 4.550 8 H 0.064 0.936 9 C 0.000 4.000 10 H 0.088 0.912 11 C -0.212 4.212 12 C 0.320 3.680 13 O -0.472 6.472 14 N -0.359 5.359 15 C 0.083 3.917 16 H 0.122 0.878 17 C -0.105 4.105 18 C -0.095 4.095 19 C -0.166 4.166 20 C 0.061 3.939 21 F -0.126 7.126 22 C -0.172 4.172 23 C -0.104 4.104 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.128 0.872 27 H 0.254 0.746 28 H 0.172 0.828 29 H 0.175 0.825 30 H 0.165 0.835 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.605 -4.923 5.593 16.396 hybrid contribution -0.091 0.490 -0.326 0.596 sum 14.514 -4.432 5.267 16.064 Atomic orbital electron populations 1.70019 1.08221 1.28102 1.51851 1.25757 0.95271 1.02761 0.93982 0.86151 0.80670 0.79443 0.79052 1.19823 1.21941 1.15026 1.21105 0.90039 0.93401 1.50505 0.93585 1.20134 0.94366 0.92080 0.93373 0.91234 1.22897 1.02812 0.96570 0.98944 1.21045 0.73013 0.87557 0.86349 1.90641 1.53384 1.87846 1.15319 1.46122 1.72522 1.08844 1.08379 1.20539 0.92807 0.98543 0.79820 0.87814 1.20292 0.94755 0.99825 0.95621 1.21110 0.98517 0.96947 0.92937 1.21346 0.90835 1.02349 1.02036 1.17895 0.81613 1.02837 0.91560 1.91474 1.46183 1.94519 1.80429 1.21240 0.99809 1.02595 0.93607 1.20853 0.91454 0.98114 0.99971 0.92505 0.90599 0.87246 0.74572 0.82789 0.82455 0.83466 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.60 13.96 21.45 0.30 -55.30 16 2 C 0.02 1.11 5.39 84.65 0.46 1.57 16 3 Si 0.92 40.49 25.09 68.60 1.72 42.21 16 4 H -0.27 -11.91 7.03 99.48 0.70 -11.21 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.23 -8.73 6.44 99.48 0.64 -8.09 16 7 C -0.51 -25.81 9.06 25.60 0.23 -25.58 16 8 H 0.05 2.57 7.87 -2.91 -0.02 2.54 16 9 C 0.02 0.77 2.01 -10.48 -0.02 0.74 16 10 H 0.07 2.61 6.74 -2.39 -0.02 2.59 16 11 C -0.17 -6.65 4.66 30.59 0.14 -6.51 16 12 C 0.53 20.89 7.32 87.86 0.64 21.53 16 13 O -0.59 -26.96 18.03 -3.04 -0.05 -27.01 16 14 N -0.71 -22.67 5.37 -442.70 -2.38 -25.05 16 15 C 0.19 5.87 3.31 44.70 0.15 6.01 16 16 H 0.10 3.17 7.68 -2.39 -0.02 3.16 16 17 C -0.10 -2.68 4.90 -19.86 -0.10 -2.78 16 18 C -0.08 -1.68 9.68 22.26 0.22 -1.47 16 19 C -0.15 -2.98 10.03 22.31 0.22 -2.76 16 20 C 0.08 1.81 7.30 22.37 0.16 1.97 16 21 F -0.15 -3.42 17.27 44.97 0.78 -2.64 16 22 C -0.15 -3.46 10.03 22.31 0.22 -3.24 16 23 C -0.09 -2.15 9.03 22.26 0.20 -1.94 16 24 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 25 H 0.08 3.32 5.71 -2.39 -0.01 3.31 16 26 H 0.11 3.56 7.95 -2.38 -0.02 3.54 16 27 H 0.41 11.27 8.96 -92.71 -0.83 10.44 16 28 H 0.15 2.84 8.05 -2.91 -0.02 2.82 16 29 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.12 3.19 6.28 -2.91 -0.02 3.17 16 Total: -1.00 -64.24 266.69 3.16 -61.08 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.27 Total: 19.15 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 2.53 Total: -12.44 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -2.08 Total: -80.34 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.05 Total: -27.01 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 1.72 Total: 42.21 kcal Total: -64.24 3.16 -61.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709910388.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.969 kcal (2) G-P(sol) polarization free energy of solvation -64.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds