Wall clock time and date at job start Mon Mar 30 2020 04:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86804 * 119.99823 * 2 1 4 4 H 1.48504 * 109.47299 * 265.63078 * 3 2 1 5 5 H 1.48504 * 109.47132 * 25.63087 * 3 2 1 6 6 H 1.48499 * 109.47036 * 145.63415 * 3 2 1 7 7 C 1.39933 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99967 * 21.99650 * 7 2 1 9 9 C 1.41406 * 120.00176 * 201.99257 * 7 2 1 10 10 C 1.40642 * 120.09105 * 44.89025 * 9 7 2 11 11 C 1.37629 * 119.69158 * 180.02562 * 10 9 7 12 12 C 1.38390 * 120.23789 * 0.06165 * 11 10 9 13 13 C 1.39561 * 120.74432 * 359.96574 * 12 11 10 14 14 C 1.37792 * 119.84173 * 359.86119 * 13 12 11 15 15 C 1.50735 * 121.54740 * 180.32429 * 14 13 12 16 16 N 1.46897 * 109.43269 * 102.18790 * 15 14 13 17 17 C 1.53005 * 109.43080 * 222.09336 * 15 14 13 18 18 O 1.42900 * 109.47271 * 52.74311 * 17 15 14 19 19 C 1.53074 * 109.66347 * 342.13636 * 15 14 13 20 20 C 1.53306 * 108.30582 * 48.09740 * 19 15 14 21 21 O 1.35884 * 118.37946 * 179.53067 * 13 12 11 22 22 H 0.96992 * 119.99835 * 359.97438 * 1 2 3 23 23 H 1.07995 * 120.15493 * 0.03119 * 10 9 7 24 24 H 1.08003 * 119.88351 * 180.08139 * 11 10 9 25 25 H 1.07990 * 119.62909 * 179.97438 * 12 11 10 26 26 H 1.00899 * 110.99801 * 179.90947 * 16 15 14 27 27 H 1.00907 * 110.99918 * 303.85693 * 16 15 14 28 28 H 1.08996 * 109.46746 * 172.74585 * 17 15 14 29 29 H 1.08996 * 109.46690 * 292.74223 * 17 15 14 30 30 H 0.96697 * 113.99530 * 179.97438 * 18 17 15 31 31 H 1.09002 * 109.70827 * 167.74836 * 19 15 14 32 32 H 1.08996 * 109.70942 * 288.36925 * 19 15 14 33 33 H 1.09001 * 109.70697 * 175.75309 * 20 19 15 34 34 H 1.08996 * 109.71808 * 55.20079 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.5822 1.9932 -1.3960 5 1 1.3965 2.6776 0.6056 6 1 3.4906 1.4687 0.7903 7 6 2.0080 -1.2118 0.0005 8 1 1.5271 -2.1133 -0.3494 9 6 3.3449 -1.2561 0.4592 10 6 3.7059 -0.5922 1.6453 11 6 5.0096 -0.6403 2.0838 12 6 5.9625 -1.3372 1.3617 13 6 5.6200 -2.0005 0.1825 14 6 4.3190 -1.9665 -0.2702 15 6 3.9052 -2.6751 -1.5346 16 7 3.2179 -3.9271 -1.1907 17 6 2.9585 -1.7779 -2.3345 18 8 3.5620 -0.4963 -2.5222 19 6 5.1434 -2.9889 -2.3781 20 6 6.1975 -3.6281 -1.4667 21 8 6.5958 -2.6619 -0.4934 22 1 -0.4849 0.8400 0.0004 23 1 2.9635 -0.0473 2.2094 24 1 5.2899 -0.1327 2.9950 25 1 6.9827 -1.3681 1.7146 26 1 2.9287 -4.4209 -2.0217 27 1 3.7993 -4.5103 -0.6074 28 1 2.7610 -2.2323 -3.3053 29 1 2.0213 -1.6620 -1.7901 30 1 3.0166 0.1256 -3.0230 31 1 4.8787 -3.6834 -3.1755 32 1 5.5385 -2.0684 -2.8077 33 1 7.0613 -3.9300 -2.0591 34 1 5.7726 -4.4988 -0.9673 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713730186.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:32 Heat of formation + Delta-G solvation = -47.596586 kcal Electronic energy + Delta-G solvation = -19510.876741 eV Core-core repulsion = 16602.269694 eV Total energy + Delta-G solvation = -2908.607046 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.06017 -36.89353 -36.27533 -34.34711 -33.27234 -30.14717 -29.96198 -28.86216 -26.42824 -25.15002 -23.29883 -21.54994 -20.53823 -18.46123 -17.86664 -16.74347 -15.93813 -15.64693 -15.34458 -15.10585 -14.46827 -14.08766 -13.76244 -13.37115 -13.09656 -12.77307 -12.53778 -12.29122 -11.98706 -11.60003 -11.43514 -11.20156 -10.85568 -10.70127 -10.41298 -10.08850 -9.89348 -9.69023 -9.34688 -9.03769 -8.64989 -8.08947 -7.36334 -6.94406 -6.73147 -4.27489 2.62632 2.73527 3.24057 3.31007 3.46330 4.05658 4.19047 4.59921 4.77281 5.09006 5.18625 5.36999 5.44132 5.63361 5.70457 5.82613 6.02270 6.17185 6.20736 6.36109 6.44681 6.64627 6.68547 6.72974 7.07758 7.15970 7.34886 7.49057 7.67151 7.75804 7.87998 8.01191 8.11310 8.39232 8.49992 8.54645 8.79691 8.98019 10.25562 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.012261 C = 0.009845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.037020 B = 2283.151092 C = 2843.287932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.089 3.911 3 Si 0.876 3.124 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.228 1.228 7 C -0.455 4.455 8 H 0.111 0.889 9 C 0.138 3.862 10 C -0.218 4.218 11 C -0.070 4.070 12 C -0.252 4.252 13 C 0.144 3.856 14 C -0.207 4.207 15 C 0.194 3.806 16 N -0.823 5.823 17 C 0.064 3.936 18 O -0.559 6.559 19 C -0.188 4.188 20 C 0.067 3.933 21 O -0.330 6.330 22 H 0.279 0.721 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.328 0.672 27 H 0.337 0.663 28 H 0.007 0.993 29 H 0.125 0.875 30 H 0.364 0.636 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.550 -3.624 -4.311 7.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.127 4.127 3 Si 0.701 3.299 4 H -0.194 1.194 5 H -0.219 1.219 6 H -0.150 1.150 7 C -0.484 4.484 8 H 0.128 0.872 9 C 0.135 3.865 10 C -0.237 4.237 11 C -0.089 4.089 12 C -0.271 4.271 13 C 0.100 3.900 14 C -0.210 4.210 15 C 0.102 3.898 16 N -0.354 5.354 17 C -0.013 4.013 18 O -0.362 6.362 19 C -0.227 4.227 20 C -0.009 4.009 21 O -0.244 6.244 22 H 0.089 0.911 23 H 0.117 0.883 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.140 0.860 27 H 0.151 0.849 28 H 0.025 0.975 29 H 0.142 0.858 30 H 0.209 0.791 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.424 -3.322 -3.599 7.308 hybrid contribution 0.474 0.468 -1.103 1.288 sum 5.898 -2.854 -4.701 8.064 Atomic orbital electron populations 1.69777 1.07947 1.29597 1.37328 1.25902 0.94264 1.00956 0.91599 0.86734 0.82528 0.80328 0.80328 1.19427 1.21871 1.15042 1.19197 0.94394 0.96604 1.38210 0.87165 1.17321 0.92370 0.87893 0.88930 1.21187 0.95521 1.08301 0.98692 1.20418 0.93278 0.97416 0.97765 1.19846 0.99101 1.10891 0.97299 1.18552 0.86949 0.93499 0.90989 1.19318 0.91783 1.11841 0.98009 1.19003 0.89674 0.89122 0.92018 1.58683 1.47259 1.07004 1.22437 1.22818 1.00210 0.82804 0.95481 1.86429 1.47130 1.24154 1.78443 1.23075 0.98712 1.02152 0.98799 1.22698 0.98341 0.90194 0.89683 1.85881 1.34078 1.52547 1.51937 0.91066 0.88263 0.88312 0.88254 0.85961 0.84933 0.97505 0.85799 0.79122 0.91651 0.89768 0.89032 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.33 13.93 55.55 0.77 -20.55 16 2 C 0.09 2.25 5.26 -17.34 -0.09 2.15 16 3 Si 0.88 20.13 26.38 -169.99 -4.48 15.65 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.23 -5.41 5.27 56.52 0.30 -5.11 16 7 C -0.45 -11.55 5.63 -37.74 -0.21 -11.76 16 8 H 0.11 2.98 6.39 -52.49 -0.34 2.64 16 9 C 0.14 3.41 4.37 -106.78 -0.47 2.95 16 10 C -0.22 -5.27 6.70 -38.90 -0.26 -5.53 16 11 C -0.07 -1.56 10.01 -39.75 -0.40 -1.96 16 12 C -0.25 -5.62 9.94 -39.03 -0.39 -6.01 16 13 C 0.14 3.28 6.47 -39.25 -0.25 3.02 16 14 C -0.21 -4.75 4.49 -103.76 -0.47 -5.22 16 15 C 0.19 3.78 0.41 -132.70 -0.05 3.73 16 16 N -0.82 -14.40 8.37 -0.15 0.00 -14.40 16 17 C 0.06 1.28 5.30 37.16 0.20 1.48 16 18 O -0.56 -11.55 11.89 -35.23 -0.42 -11.97 16 19 C -0.19 -3.17 5.08 -26.53 -0.13 -3.30 16 20 C 0.07 1.08 6.97 37.32 0.26 1.34 16 21 O -0.33 -6.74 10.27 -19.38 -0.20 -6.94 16 22 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 23 H 0.10 2.38 6.96 -52.49 -0.37 2.01 16 24 H 0.10 1.90 8.06 -52.48 -0.42 1.47 16 25 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 26 H 0.33 4.79 8.98 -39.29 -0.35 4.44 16 27 H 0.34 5.57 7.58 -39.29 -0.30 5.28 16 28 H 0.01 0.12 8.13 -51.93 -0.42 -0.30 16 29 H 0.12 2.83 3.92 -51.93 -0.20 2.63 16 30 H 0.36 6.32 9.12 45.56 0.42 6.73 16 31 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 32 H 0.08 1.58 7.65 -51.93 -0.40 1.18 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.74 6.83 -51.93 -0.35 0.39 16 LS Contribution 267.19 15.07 4.03 4.03 Total: -1.00 -28.69 267.19 -5.81 -34.51 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -3.24 Total: 18.79 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -2.27 Total: -19.11 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.77 Total: -34.95 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.62 Total: -18.92 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.48 Total: 15.65 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.69 -5.81 -34.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713730186.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.089 kcal (2) G-P(sol) polarization free energy of solvation -28.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds