Wall clock time and date at job start Mon Mar 30 2020 04:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86804 * 119.99823 * 2 1 4 4 H 1.48504 * 109.47299 * 265.63078 * 3 2 1 5 5 H 1.48504 * 109.47132 * 25.63087 * 3 2 1 6 6 H 1.48499 * 109.47036 * 145.63415 * 3 2 1 7 7 C 1.39933 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99967 * 21.99650 * 7 2 1 9 9 C 1.41406 * 120.00176 * 201.99257 * 7 2 1 10 10 C 1.40642 * 120.09105 * 44.89025 * 9 7 2 11 11 C 1.37629 * 119.69158 * 180.02562 * 10 9 7 12 12 C 1.38390 * 120.23789 * 0.06165 * 11 10 9 13 13 C 1.39561 * 120.74432 * 359.96574 * 12 11 10 14 14 C 1.37792 * 119.84173 * 359.86119 * 13 12 11 15 15 C 1.50735 * 121.54740 * 180.32429 * 14 13 12 16 16 N 1.46897 * 109.43269 * 102.18790 * 15 14 13 17 17 C 1.53005 * 109.43080 * 222.09336 * 15 14 13 18 18 O 1.42900 * 109.47271 * 52.74311 * 17 15 14 19 19 C 1.53074 * 109.66347 * 342.13636 * 15 14 13 20 20 C 1.53306 * 108.30582 * 48.09740 * 19 15 14 21 21 O 1.35884 * 118.37946 * 179.53067 * 13 12 11 22 22 H 0.96992 * 119.99835 * 359.97438 * 1 2 3 23 23 H 1.07995 * 120.15493 * 0.03119 * 10 9 7 24 24 H 1.08003 * 119.88351 * 180.08139 * 11 10 9 25 25 H 1.07990 * 119.62909 * 179.97438 * 12 11 10 26 26 H 1.00899 * 110.99801 * 179.90947 * 16 15 14 27 27 H 1.00907 * 110.99918 * 303.85693 * 16 15 14 28 28 H 1.08996 * 109.46746 * 172.74585 * 17 15 14 29 29 H 1.08996 * 109.46690 * 292.74223 * 17 15 14 30 30 H 0.96697 * 113.99530 * 179.97438 * 18 17 15 31 31 H 1.09002 * 109.70827 * 167.74836 * 19 15 14 32 32 H 1.08996 * 109.70942 * 288.36925 * 19 15 14 33 33 H 1.09001 * 109.70697 * 175.75309 * 20 19 15 34 34 H 1.08996 * 109.71808 * 55.20079 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.5822 1.9932 -1.3960 5 1 1.3965 2.6776 0.6056 6 1 3.4906 1.4687 0.7903 7 6 2.0080 -1.2118 0.0005 8 1 1.5271 -2.1133 -0.3494 9 6 3.3449 -1.2561 0.4592 10 6 3.7059 -0.5922 1.6453 11 6 5.0096 -0.6403 2.0838 12 6 5.9625 -1.3372 1.3617 13 6 5.6200 -2.0005 0.1825 14 6 4.3190 -1.9665 -0.2702 15 6 3.9052 -2.6751 -1.5346 16 7 3.2179 -3.9271 -1.1907 17 6 2.9585 -1.7779 -2.3345 18 8 3.5620 -0.4963 -2.5222 19 6 5.1434 -2.9889 -2.3781 20 6 6.1975 -3.6281 -1.4667 21 8 6.5958 -2.6619 -0.4934 22 1 -0.4849 0.8400 0.0004 23 1 2.9635 -0.0473 2.2094 24 1 5.2899 -0.1327 2.9950 25 1 6.9827 -1.3681 1.7146 26 1 2.9287 -4.4209 -2.0217 27 1 3.7993 -4.5103 -0.6074 28 1 2.7610 -2.2323 -3.3053 29 1 2.0213 -1.6620 -1.7901 30 1 3.0166 0.1256 -3.0230 31 1 4.8787 -3.6834 -3.1755 32 1 5.5385 -2.0684 -2.8077 33 1 7.0613 -3.9300 -2.0591 34 1 5.7726 -4.4988 -0.9673 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713730186.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:32 Heat of formation + Delta-G solvation = -70.400755 kcal Electronic energy + Delta-G solvation = -19511.865604 eV Core-core repulsion = 16602.269694 eV Total energy + Delta-G solvation = -2909.595909 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.63613 -38.50164 -37.92568 -35.88195 -35.12684 -31.92745 -31.43151 -30.44585 -28.00998 -26.94332 -24.78194 -23.20570 -22.27123 -20.01629 -19.62652 -18.32378 -17.60055 -17.28086 -16.90050 -16.67136 -16.14642 -15.71855 -15.32909 -14.88214 -14.66147 -14.50978 -14.18601 -13.86563 -13.65414 -13.34067 -13.16024 -12.69862 -12.54085 -12.33409 -12.00446 -11.81546 -11.54805 -11.47145 -10.95662 -10.82960 -10.32005 -9.49493 -9.11563 -8.70953 -8.61953 -6.18636 0.84207 0.94196 1.39778 1.46495 1.60213 2.32472 2.57247 2.77560 3.30673 3.50635 3.82912 3.85946 4.05219 4.28825 4.36615 4.44234 4.49543 4.63086 4.69763 4.81453 4.91131 5.00204 5.05503 5.13037 5.36158 5.50060 5.55939 5.75771 5.92857 6.11374 6.24751 6.41560 6.57061 6.71707 6.74058 6.97193 7.04492 7.09992 8.39872 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.012261 C = 0.009845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.037020 B = 2283.151092 C = 2843.287932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.064 3.936 3 Si 0.917 3.083 4 H -0.261 1.261 5 H -0.290 1.290 6 H -0.240 1.240 7 C -0.455 4.455 8 H 0.087 0.913 9 C 0.118 3.882 10 C -0.240 4.240 11 C -0.073 4.073 12 C -0.254 4.254 13 C 0.133 3.867 14 C -0.211 4.211 15 C 0.190 3.810 16 N -0.831 5.831 17 C 0.067 3.933 18 O -0.574 6.574 19 C -0.179 4.179 20 C 0.059 3.941 21 O -0.338 6.338 22 H 0.283 0.717 23 H 0.091 0.909 24 H 0.128 0.872 25 H 0.120 0.880 26 H 0.346 0.654 27 H 0.343 0.657 28 H 0.032 0.968 29 H 0.094 0.906 30 H 0.375 0.625 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.129 0.871 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.490 -4.467 -5.124 10.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.148 4.148 3 Si 0.741 3.259 4 H -0.186 1.186 5 H -0.217 1.217 6 H -0.163 1.163 7 C -0.486 4.486 8 H 0.104 0.896 9 C 0.115 3.885 10 C -0.260 4.260 11 C -0.091 4.091 12 C -0.273 4.273 13 C 0.088 3.912 14 C -0.213 4.213 15 C 0.098 3.902 16 N -0.364 5.364 17 C -0.010 4.010 18 O -0.379 6.379 19 C -0.219 4.219 20 C -0.016 4.016 21 O -0.253 6.253 22 H 0.093 0.907 23 H 0.109 0.891 24 H 0.146 0.854 25 H 0.138 0.862 26 H 0.160 0.840 27 H 0.157 0.843 28 H 0.050 0.950 29 H 0.111 0.889 30 H 0.222 0.778 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.147 0.853 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.368 -4.176 -4.431 9.558 hybrid contribution 0.009 0.612 -0.861 1.057 sum 7.377 -3.564 -5.293 9.754 Atomic orbital electron populations 1.69804 1.08784 1.30227 1.39860 1.26271 0.94520 1.02533 0.91522 0.86122 0.81080 0.78341 0.80380 1.18566 1.21654 1.16291 1.19015 0.94862 0.95928 1.38770 0.89583 1.17506 0.92557 0.88980 0.89477 1.21299 0.96489 1.09128 0.99045 1.20727 0.92468 0.97157 0.98750 1.20252 1.00079 1.09831 0.97165 1.18751 0.87289 0.93764 0.91388 1.19694 0.91700 1.10983 0.98961 1.19008 0.90900 0.89450 0.90874 1.58528 1.47430 1.06755 1.23703 1.22684 0.98959 0.82977 0.96415 1.86390 1.47777 1.24824 1.78869 1.22980 0.97382 1.02235 0.99256 1.23097 0.99904 0.89477 0.89101 1.85863 1.33648 1.53186 1.52610 0.90684 0.89061 0.85409 0.86200 0.83957 0.84270 0.94990 0.88886 0.77824 0.88248 0.91597 0.85337 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -45.82 13.93 21.82 0.30 -45.52 16 2 C 0.06 3.29 5.26 85.25 0.45 3.73 16 3 Si 0.92 41.88 26.38 68.60 1.81 43.69 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.24 -11.33 5.27 99.48 0.52 -10.80 16 7 C -0.46 -23.60 5.63 23.46 0.13 -23.47 16 8 H 0.09 4.81 6.39 -2.91 -0.02 4.79 16 9 C 0.12 5.83 4.37 -21.26 -0.09 5.73 16 10 C -0.24 -11.60 6.70 22.71 0.15 -11.45 16 11 C -0.07 -3.13 10.01 22.16 0.22 -2.91 16 12 C -0.25 -10.80 9.94 22.63 0.22 -10.57 16 13 C 0.13 5.77 6.47 22.48 0.15 5.92 16 14 C -0.21 -9.44 4.49 -19.31 -0.09 -9.53 16 15 C 0.19 7.07 0.41 2.82 0.00 7.07 16 16 N -0.83 -27.59 8.37 -154.38 -1.29 -28.88 16 17 C 0.07 2.62 5.30 71.98 0.38 3.00 16 18 O -0.57 -23.22 11.89 -148.98 -1.77 -24.99 16 19 C -0.18 -5.44 5.08 30.72 0.16 -5.28 16 20 C 0.06 1.67 6.97 72.08 0.50 2.17 16 21 O -0.34 -12.82 10.27 -92.24 -0.95 -13.76 16 22 H 0.28 14.02 8.30 -92.71 -0.77 13.25 16 23 H 0.09 4.44 6.96 -2.91 -0.02 4.42 16 24 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 25 H 0.12 4.53 8.06 -2.92 -0.02 4.51 16 26 H 0.35 9.25 8.98 -89.69 -0.81 8.45 16 27 H 0.34 10.59 7.58 -89.69 -0.68 9.91 16 28 H 0.03 1.08 8.13 -2.39 -0.02 1.06 16 29 H 0.09 4.30 3.92 -2.39 -0.01 4.29 16 30 H 0.38 12.78 9.12 -74.06 -0.68 12.10 16 31 H 0.10 2.34 8.13 -2.39 -0.02 2.32 16 32 H 0.07 2.28 7.65 -2.39 -0.02 2.26 16 33 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.06 1.67 6.83 -2.39 -0.02 1.65 16 Total: -1.00 -61.55 267.19 -0.89 -62.44 By element: Atomic # 1 Polarization: 43.78 SS G_CDS: -1.18 Total: 42.60 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: 2.19 Total: -35.58 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -0.99 Total: -74.39 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -2.72 Total: -38.75 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 1.81 Total: 43.69 kcal Total: -61.55 -0.89 -62.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713730186.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.957 kcal (2) G-P(sol) polarization free energy of solvation -61.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds