Wall clock time and date at job start Mon Mar 30 2020 04:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 119.99752 * 2 1 4 4 H 1.48493 * 109.47449 * 270.61306 * 3 2 1 5 5 H 1.48499 * 109.47039 * 30.61880 * 3 2 1 6 6 H 1.48507 * 109.46797 * 150.61046 * 3 2 1 7 7 C 1.39930 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99702 * 341.26697 * 7 2 1 9 9 C 1.41398 * 120.00389 * 161.27047 * 7 2 1 10 10 C 1.40770 * 120.28684 * 331.70942 * 9 7 2 11 11 C 1.37441 * 119.72633 * 180.15099 * 10 9 7 12 12 C 1.38968 * 120.66840 * 359.96188 * 11 10 9 13 13 C 1.38855 * 120.20336 * 359.85014 * 12 11 10 14 14 C 1.38546 * 119.95094 * 0.24065 * 13 12 11 15 15 O 1.35898 * 121.75828 * 180.50867 * 13 12 11 16 16 C 1.42810 * 117.87380 * 342.72752 * 15 13 12 17 17 C 1.53410 * 108.35791 * 49.27934 * 16 15 13 18 18 C 1.50861 * 118.53445 * 179.82534 * 12 11 10 19 19 N 1.46902 * 109.43534 * 282.14410 * 18 12 11 20 20 C 1.53000 * 109.43263 * 42.05020 * 18 12 11 21 21 O 1.42898 * 109.47324 * 180.47080 * 20 18 12 22 22 H 0.97008 * 120.00211 * 359.97438 * 1 2 3 23 23 H 1.07996 * 120.13529 * 0.12359 * 10 9 7 24 24 H 1.08003 * 119.66492 * 179.97438 * 11 10 9 25 25 H 1.07994 * 119.98812 * 179.84056 * 14 13 12 26 26 H 1.09005 * 109.68370 * 168.98919 * 16 15 13 27 27 H 1.08992 * 109.68854 * 289.55101 * 16 15 13 28 28 H 1.08997 * 109.69297 * 175.40314 * 17 16 15 29 29 H 1.09000 * 109.69140 * 54.81491 * 17 16 15 30 30 H 1.00897 * 110.99995 * 59.90180 * 19 18 12 31 31 H 1.00898 * 110.99935 * 183.86070 * 19 18 12 32 32 H 1.09006 * 109.46988 * 300.47091 * 20 18 12 33 33 H 1.08998 * 109.47583 * 60.46561 * 20 18 12 34 34 H 0.96696 * 114.00035 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4767 2.0540 -1.3999 5 1 1.4462 2.6489 0.7131 6 1 3.5462 1.4365 0.6871 7 6 2.0080 -1.2118 -0.0005 8 1 1.5108 -2.1225 0.2995 9 6 3.3658 -1.2441 -0.3937 10 6 3.8628 -0.2962 -1.3082 11 6 5.1839 -0.3402 -1.6848 12 6 6.0354 -1.3110 -1.1714 13 6 5.5593 -2.2495 -0.2656 14 6 4.2301 -2.2222 0.1244 15 8 6.3663 -3.2061 0.2640 16 6 7.6059 -3.4727 -0.3931 17 6 8.3184 -2.1369 -0.6411 18 6 7.4755 -1.3171 -1.6208 19 7 7.5670 -1.9131 -2.9603 20 6 8.0008 0.1192 -1.6658 21 8 9.3616 0.1154 -2.1020 22 1 -0.4851 0.8401 0.0004 23 1 3.2086 0.4620 -1.7125 24 1 5.5641 0.3872 -2.3868 25 1 3.8585 -2.9535 0.8268 26 1 8.2269 -4.1083 0.2382 27 1 7.4177 -3.9707 -1.3442 28 1 9.3041 -2.3201 -1.0686 29 1 8.4200 -1.5947 0.2990 30 1 7.0205 -1.3892 -3.6273 31 1 8.5281 -1.9866 -3.2585 32 1 7.3983 0.7049 -2.3603 33 1 7.9394 0.5600 -0.6708 34 1 9.7602 0.9948 -2.1546 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713732504.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:28 Heat of formation + Delta-G solvation = -72.754204 kcal Electronic energy + Delta-G solvation = -18582.542684 eV Core-core repulsion = 15672.844721 eV Total energy + Delta-G solvation = -2909.697963 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.02163 -37.29002 -36.65239 -34.71755 -33.40707 -30.38640 -30.08557 -28.92592 -27.14603 -25.05770 -23.50516 -21.49526 -20.86331 -18.92971 -17.88436 -17.53531 -16.07668 -15.73744 -15.41303 -15.20435 -14.81170 -14.47355 -14.16970 -13.73388 -13.33649 -12.90368 -12.58422 -12.49262 -12.36230 -11.99587 -11.67959 -11.13773 -11.10820 -10.78842 -10.59074 -10.26641 -10.08528 -9.97008 -9.75682 -9.41204 -9.13734 -8.37442 -7.70321 -7.13080 -7.01763 -4.55813 2.46396 2.68248 3.05483 3.17421 3.26942 3.92833 4.09344 4.24589 4.43087 4.94376 4.96970 5.10687 5.38528 5.43679 5.45944 5.61640 5.80990 5.83725 5.92334 5.99272 6.19055 6.34187 6.44115 6.72627 6.75529 6.88273 7.33912 7.40962 7.45879 7.52031 7.56246 7.71738 7.83032 7.86236 8.26416 8.48068 8.62554 8.75494 9.99925 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.029551 B = 0.007615 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.284320 B = 3676.001809 C = 4289.449387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.085 3.915 3 Si 0.918 3.082 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.247 1.247 7 C -0.440 4.440 8 H 0.093 0.907 9 C 0.121 3.879 10 C -0.261 4.261 11 C -0.045 4.045 12 C -0.269 4.269 13 C 0.179 3.821 14 C -0.245 4.245 15 O -0.329 6.329 16 C 0.070 3.930 17 C -0.135 4.135 18 C 0.191 3.809 19 N -0.830 5.830 20 C 0.048 3.952 21 O -0.576 6.576 22 H 0.287 0.713 23 H 0.104 0.896 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.338 0.662 31 H 0.335 0.665 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.373 1.986 -2.914 13.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.170 1.170 7 C -0.468 4.468 8 H 0.111 0.889 9 C 0.117 3.883 10 C -0.280 4.280 11 C -0.064 4.064 12 C -0.272 4.272 13 C 0.134 3.866 14 C -0.265 4.265 15 O -0.243 6.243 16 C -0.006 4.006 17 C -0.174 4.174 18 C 0.098 3.902 19 N -0.360 5.360 20 C -0.031 4.031 21 O -0.381 6.381 22 H 0.097 0.903 23 H 0.122 0.878 24 H 0.109 0.891 25 H 0.126 0.874 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.151 0.849 31 H 0.148 0.852 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 12.606 0.651 -2.415 12.852 hybrid contribution 0.811 2.516 -0.529 2.696 sum 13.417 3.167 -2.944 14.096 Atomic orbital electron populations 1.69697 1.08158 1.30459 1.34218 1.26190 0.94710 1.01877 0.90737 0.86281 0.80826 0.79448 0.78986 1.19526 1.21947 1.16988 1.19510 0.93173 0.96283 1.37837 0.88901 1.17428 0.92500 0.89709 0.88627 1.21010 0.95624 1.05398 1.05967 1.20294 0.93361 0.95810 0.96952 1.18575 0.93636 1.04252 1.10727 1.18418 0.89320 0.86669 0.92173 1.20374 0.89768 1.07057 1.09338 1.85919 1.30596 1.55007 1.52817 1.22738 0.83810 0.96088 0.97965 1.22120 0.98910 0.97084 0.99236 1.19144 0.92366 0.89044 0.89618 1.59027 1.15702 1.58063 1.03169 1.23235 0.81638 0.99626 0.98608 1.86391 1.27174 1.33964 1.90580 0.90289 0.87793 0.89056 0.87366 0.89269 0.91309 0.90600 0.91137 0.84909 0.85213 0.93504 0.93248 0.77932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.09 13.93 55.55 0.77 -20.31 16 2 C 0.08 2.20 5.41 -17.35 -0.09 2.10 16 3 Si 0.92 20.59 24.55 -169.99 -4.17 16.41 16 4 H -0.27 -5.81 6.44 56.52 0.36 -5.45 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.25 -5.68 7.04 56.52 0.40 -5.28 16 7 C -0.44 -11.90 9.57 -37.75 -0.36 -12.26 16 8 H 0.09 2.63 8.06 -52.48 -0.42 2.20 16 9 C 0.12 3.09 5.13 -106.91 -0.55 2.55 16 10 C -0.26 -6.23 7.30 -38.92 -0.28 -6.51 16 11 C -0.05 -0.96 9.00 -39.60 -0.36 -1.32 16 12 C -0.27 -5.56 5.02 -104.05 -0.52 -6.08 16 13 C 0.18 4.05 6.46 -39.24 -0.25 3.79 16 14 C -0.25 -6.03 9.67 -38.64 -0.37 -6.41 16 15 O -0.33 -6.79 10.26 -19.42 -0.20 -6.99 16 16 C 0.07 1.13 7.00 37.37 0.26 1.40 16 17 C -0.14 -2.10 4.78 -26.50 -0.13 -2.23 16 18 C 0.19 3.15 0.58 -132.65 -0.08 3.08 16 19 N -0.83 -12.63 8.44 -0.11 0.00 -12.63 16 20 C 0.05 0.70 5.63 37.16 0.21 0.91 16 21 O -0.58 -6.99 12.70 -35.23 -0.45 -7.44 16 22 H 0.29 6.79 8.30 -40.82 -0.34 6.46 16 23 H 0.10 2.46 4.42 -52.49 -0.23 2.23 16 24 H 0.09 1.67 6.42 -52.48 -0.34 1.34 16 25 H 0.11 2.61 8.06 -52.49 -0.42 2.19 16 26 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.07 1.15 7.80 -51.93 -0.40 0.74 16 28 H 0.08 1.05 7.98 -51.93 -0.41 0.64 16 29 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 30 H 0.34 5.04 8.93 -39.29 -0.35 4.68 16 31 H 0.33 4.53 8.45 -39.29 -0.33 4.20 16 32 H 0.05 0.66 6.47 -51.93 -0.34 0.32 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.37 2.90 9.12 45.56 0.42 3.32 16 LS Contribution 274.43 15.07 4.14 4.14 Total: -1.00 -28.61 274.43 -5.72 -34.33 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -3.28 Total: 13.48 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -2.53 Total: -20.99 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.77 Total: -32.94 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.65 Total: -14.43 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.17 Total: 16.41 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.61 -5.72 -34.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713732504.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.426 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds