Wall clock time and date at job start Mon Mar 30 2020 04:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86797 * 119.99939 * 2 1 4 4 H 1.48497 * 109.47266 * 239.99958 * 3 2 1 5 5 H 1.48505 * 109.46929 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47314 * 119.99606 * 3 2 1 7 7 C 1.39934 * 120.00381 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00472 * 193.23586 * 7 2 1 9 9 C 1.41164 * 119.99607 * 13.24310 * 7 2 1 10 10 C 1.40587 * 120.18301 * 28.37240 * 9 7 2 11 11 C 1.36492 * 119.81464 * 179.90979 * 10 9 7 12 12 C 1.38675 * 120.44213 * 0.57403 * 11 10 9 13 13 C 1.38678 * 120.84550 * 359.36979 * 12 11 10 14 14 C 1.38071 * 119.86780 * 0.20671 * 13 12 11 15 15 O 1.35514 * 121.96993 * 180.36193 * 14 13 12 16 16 C 1.42837 * 117.88176 * 342.74588 * 15 14 13 17 17 C 1.53405 * 108.35165 * 49.12724 * 16 15 14 18 18 C 1.50784 * 118.77268 * 180.02562 * 13 12 11 19 19 N 1.46902 * 109.43540 * 282.38110 * 18 13 12 20 20 C 1.52998 * 109.43479 * 42.29098 * 18 13 12 21 21 O 1.42899 * 109.47084 * 180.57311 * 20 18 13 22 22 H 0.96996 * 120.00700 * 0.02562 * 1 2 3 23 23 H 1.08001 * 120.09257 * 0.15002 * 10 9 7 24 24 H 1.07998 * 119.78334 * 180.29940 * 11 10 9 25 25 H 1.08001 * 119.57846 * 179.64932 * 12 11 10 26 26 H 1.09004 * 109.69206 * 289.41085 * 16 15 14 27 27 H 1.09002 * 109.69149 * 168.84315 * 16 15 14 28 28 H 1.09000 * 109.70601 * 175.73724 * 17 16 15 29 29 H 1.09004 * 109.73456 * 55.15827 * 17 16 15 30 30 H 1.00903 * 111.00171 * 59.99689 * 19 18 13 31 31 H 1.00900 * 110.99705 * 183.95402 * 19 18 13 32 32 H 1.09004 * 109.47617 * 300.57174 * 20 18 13 33 33 H 1.09003 * 109.47179 * 60.57563 * 20 18 13 34 34 H 0.96699 * 114.00381 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2775 2.7464 -0.0006 6 1 3.0963 1.6965 1.2126 7 6 2.0084 -1.2118 0.0005 8 1 3.0669 -1.2242 0.2147 9 6 1.3307 -2.4182 -0.2790 10 6 0.1923 -2.4146 -1.1038 11 6 -0.4561 -3.5857 -1.3706 12 6 -0.0064 -4.7782 -0.8239 13 6 1.1147 -4.8083 -0.0082 14 6 1.7939 -3.6389 0.2705 15 8 2.8980 -3.6202 1.0560 16 6 3.1407 -4.7511 1.8942 17 6 3.0118 -6.0203 1.0422 18 6 1.5628 -6.1307 0.5609 19 7 0.6989 -6.4940 1.6922 20 6 1.4663 -7.2091 -0.5201 21 8 1.8782 -8.4654 0.0222 22 1 -0.4851 0.8399 -0.0004 23 1 -0.1660 -1.4884 -1.5283 24 1 -1.3278 -3.5831 -2.0083 25 1 -0.5334 -5.6958 -1.0397 26 1 2.4079 -4.7744 2.7009 27 1 4.1456 -4.6897 2.3120 28 1 3.2670 -6.8935 1.6426 29 1 3.6805 -5.9567 0.1837 30 1 -0.2635 -6.5764 1.4004 31 1 1.0176 -7.3444 2.1320 32 1 0.4359 -7.2838 -0.8679 33 1 2.1137 -6.9445 -1.3561 34 1 1.8428 -9.1970 -0.6092 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713802534.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:25 Heat of formation + Delta-G solvation = -69.427937 kcal Electronic energy + Delta-G solvation = -18685.100578 eV Core-core repulsion = 15775.546853 eV Total energy + Delta-G solvation = -2909.553725 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.79189 -37.15501 -36.18034 -34.69441 -33.25865 -30.07338 -29.38397 -28.93700 -26.56291 -25.24035 -23.00186 -21.99103 -20.28777 -18.70847 -17.64034 -16.71197 -16.38811 -15.63974 -15.29938 -14.83767 -14.63255 -14.35492 -13.87208 -13.60014 -12.96387 -12.74008 -12.45586 -12.24790 -11.94982 -11.66011 -11.34743 -11.15693 -10.83462 -10.81387 -10.45174 -10.23340 -9.89404 -9.84539 -9.49836 -9.25172 -9.13148 -8.27030 -7.36935 -6.93725 -6.62940 -4.20504 2.75326 2.92468 3.12579 3.16725 3.24058 4.01788 4.29805 4.56870 4.69215 5.03093 5.09594 5.22202 5.53671 5.58995 5.66156 5.80378 5.93695 6.03854 6.14654 6.27058 6.35292 6.48442 6.55645 7.01472 7.15038 7.32341 7.35999 7.52306 7.63271 7.74099 7.81136 7.90994 8.07311 8.24591 8.49033 8.77584 8.90640 9.15132 10.30175 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.034859 B = 0.007099 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.036546 B = 3943.211331 C = 4458.565166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.071 3.929 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.445 4.445 8 H 0.081 0.919 9 C 0.097 3.903 10 C -0.144 4.144 11 C -0.124 4.124 12 C -0.211 4.211 13 C -0.126 4.126 14 C 0.043 3.957 15 O -0.310 6.310 16 C 0.068 3.932 17 C -0.136 4.136 18 C 0.177 3.823 19 N -0.827 5.827 20 C 0.051 3.949 21 O -0.576 6.576 22 H 0.279 0.721 23 H 0.123 0.877 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.339 0.661 31 H 0.336 0.664 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.067 -9.651 -0.547 9.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.475 4.475 8 H 0.099 0.901 9 C 0.094 3.906 10 C -0.164 4.164 11 C -0.142 4.142 12 C -0.231 4.231 13 C -0.128 4.128 14 C -0.002 4.002 15 O -0.225 6.225 16 C -0.009 4.009 17 C -0.174 4.174 18 C 0.085 3.915 19 N -0.357 5.357 20 C -0.028 4.028 21 O -0.381 6.381 22 H 0.090 0.910 23 H 0.140 0.860 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.325 -8.261 0.354 8.589 hybrid contribution -0.243 -0.772 -1.042 1.320 sum 2.082 -9.033 -0.688 9.296 Atomic orbital electron populations 1.69811 1.07420 1.29067 1.36659 1.25876 0.94779 1.01156 0.92640 0.86319 0.79982 0.80178 0.79918 1.18954 1.20488 1.19037 1.19387 0.96858 0.90184 1.41035 0.90064 1.17201 0.92279 0.89836 0.91264 1.20834 0.98491 0.96962 1.00086 1.20302 0.99433 0.93342 1.01163 1.20023 0.99773 0.96543 1.06792 1.18786 0.99512 0.91176 1.03311 1.18817 0.90716 0.93334 0.97327 1.85865 1.41833 1.40931 1.53847 1.22668 1.00756 0.84774 0.92654 1.22145 0.95414 0.99102 1.00731 1.19383 0.93034 0.90951 0.88153 1.58928 1.05815 1.40669 1.30260 1.23172 0.98486 0.83930 0.97219 1.86395 1.90508 1.18709 1.42494 0.90999 0.85966 0.89362 0.89698 0.91886 0.89665 0.90864 0.91236 0.84806 0.85054 0.93288 0.93258 0.77976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.22 10.95 55.55 0.61 -20.61 16 2 C 0.07 1.85 5.20 -17.33 -0.09 1.76 16 3 Si 0.91 19.34 29.58 -169.99 -5.03 14.31 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.44 -12.24 8.64 -37.84 -0.33 -12.57 16 8 H 0.08 2.22 7.62 -52.49 -0.40 1.82 16 9 C 0.10 2.65 5.56 -106.60 -0.59 2.06 16 10 C -0.14 -3.76 8.60 -39.33 -0.34 -4.10 16 11 C -0.12 -2.89 9.97 -40.05 -0.40 -3.29 16 12 C -0.21 -4.61 9.04 -39.26 -0.36 -4.97 16 13 C -0.13 -2.81 4.98 -104.48 -0.52 -3.33 16 14 C 0.04 1.10 6.51 -38.34 -0.25 0.85 16 15 O -0.31 -7.48 9.48 -18.23 -0.17 -7.65 16 16 C 0.07 1.29 7.00 37.37 0.26 1.55 16 17 C -0.14 -2.35 4.79 -26.48 -0.13 -2.48 16 18 C 0.18 3.19 0.58 -132.67 -0.08 3.11 16 19 N -0.83 -13.81 8.46 -0.12 0.00 -13.81 16 20 C 0.05 0.78 5.64 37.16 0.21 0.99 16 21 O -0.58 -7.40 12.71 -35.23 -0.45 -7.84 16 22 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 23 H 0.12 3.28 6.28 -52.49 -0.33 2.95 16 24 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 25 H 0.08 1.62 6.44 -52.49 -0.34 1.28 16 26 H 0.06 1.24 7.81 -51.93 -0.41 0.83 16 27 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 28 H 0.07 1.13 7.99 -51.93 -0.41 0.72 16 29 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.34 5.49 8.93 -39.29 -0.35 5.14 16 31 H 0.34 4.97 8.45 -39.29 -0.33 4.64 16 32 H 0.05 0.72 6.49 -51.93 -0.34 0.39 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.37 3.07 9.12 45.56 0.42 3.49 16 LS Contribution 278.88 15.07 4.20 4.20 Total: -1.00 -29.61 278.88 -6.76 -36.37 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -3.32 Total: 15.44 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -2.61 Total: -20.42 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.61 Total: -34.42 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.62 Total: -15.49 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.61 -6.76 -36.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713802534.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.060 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds