Wall clock time and date at job start Mon Mar 30 2020 03:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00123 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00183 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99994 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99989 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.46848 * 110.99750 * 66.04607 * 10 9 7 12 12 C 1.53045 * 109.51853 * 185.84278 * 11 10 9 13 13 C 1.53121 * 109.27659 * 300.81897 * 12 11 10 14 14 F 1.39896 * 109.52417 * 177.56534 * 13 12 11 15 15 F 1.39904 * 109.51936 * 297.68837 * 13 12 11 16 16 C 1.53118 * 109.16297 * 57.65627 * 13 12 11 17 17 H 1.09001 * 109.50177 * 62.28453 * 16 13 12 18 18 C 1.50699 * 109.50523 * 182.40423 * 16 13 12 19 19 O 1.20832 * 119.99652 * 119.99503 * 18 16 13 20 20 O 1.34224 * 120.00023 * 300.00171 * 18 16 13 21 21 C 1.46846 * 110.99938 * 190.25388 * 10 9 7 22 22 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 23 23 H 1.08992 * 109.46894 * 60.00097 * 9 7 2 24 24 H 1.09004 * 109.47113 * 300.00248 * 9 7 2 25 25 H 1.08996 * 109.46281 * 305.85079 * 11 10 9 26 26 H 1.08994 * 109.46340 * 65.83545 * 11 10 9 27 27 H 1.08996 * 109.50687 * 60.76000 * 12 11 10 28 28 H 1.09005 * 109.50033 * 180.88147 * 12 11 10 29 29 H 0.96698 * 116.99827 * 179.97438 * 20 18 16 30 30 H 1.08995 * 109.46359 * 294.17653 * 21 10 9 31 31 H 1.09001 * 109.45880 * 54.14768 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 2.9706 -3.6540 1.2524 12 6 4.0509 -4.7341 1.1591 13 6 3.3887 -6.0905 0.9019 14 9 4.3747 -7.0729 0.7605 15 9 2.5558 -6.4156 1.9780 16 6 2.5592 -6.0094 -0.3825 17 1 3.2150 -5.7950 -1.2263 18 6 1.8565 -7.3228 -0.6115 19 8 0.6499 -7.3614 -0.6630 20 8 2.5710 -8.4496 -0.7581 21 6 1.5222 -4.8924 -0.2446 22 1 -0.4849 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6246 -2.5571 0.8897 25 1 3.4399 -2.6848 1.4211 26 1 2.2999 -3.8820 2.0806 27 1 4.7302 -4.4996 0.3396 28 1 4.6084 -4.7729 2.0950 29 1 2.0760 -9.2676 -0.9024 30 1 0.8582 -5.1144 0.5908 31 1 0.9394 -4.8225 -1.1630 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717820929.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:35 Heat of formation + Delta-G solvation = -190.727065 kcal Electronic energy + Delta-G solvation = -19150.348360 eV Core-core repulsion = 15681.305180 eV Total energy + Delta-G solvation = -3469.043180 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.95604 -46.92090 -40.36980 -37.90333 -36.17154 -33.42669 -31.78283 -31.24684 -27.06812 -24.74973 -23.77790 -22.18893 -21.02285 -19.78115 -18.19041 -17.48016 -17.01379 -16.67574 -16.42194 -15.92249 -14.99522 -14.86825 -14.35403 -13.93989 -13.81577 -13.61948 -13.22689 -12.97073 -12.64437 -12.48292 -12.16108 -11.92792 -11.57418 -11.43156 -11.21116 -10.95358 -10.78588 -10.66747 -10.60069 -10.19911 -9.94147 -9.32678 -8.51322 -7.51352 -6.09997 -4.12772 2.03002 2.79735 3.28233 3.34712 3.37033 3.67830 4.07448 4.26016 4.37549 4.45819 4.77464 4.99204 5.18683 5.26071 5.32732 5.53484 5.71780 5.72418 5.91333 6.15558 6.30134 6.37937 6.44992 7.10371 7.20716 7.64686 7.77676 7.89219 8.01583 8.36712 8.93816 9.51944 11.00785 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.037788 B = 0.006060 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.797406 B = 4619.310772 C = 5040.042373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.065 0.935 9 C 0.195 3.805 10 N -0.536 5.536 11 C 0.058 3.942 12 C -0.152 4.152 13 C 0.298 3.702 14 F -0.193 7.193 15 F -0.197 7.197 16 C -0.116 4.116 17 H 0.144 0.856 18 C 0.485 3.515 19 O -0.499 6.499 20 O -0.507 6.507 21 C 0.070 3.930 22 H 0.263 0.737 23 H 0.035 0.965 24 H -0.003 1.003 25 H 0.104 0.896 26 H 0.035 0.965 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.409 0.591 30 H 0.045 0.955 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.161 -12.837 0.443 14.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.084 0.916 9 C 0.071 3.929 10 N -0.261 5.261 11 C -0.070 4.070 12 C -0.190 4.190 13 C 0.261 3.739 14 F -0.174 7.174 15 F -0.178 7.178 16 C -0.136 4.136 17 H 0.162 0.838 18 C 0.325 3.675 19 O -0.386 6.386 20 O -0.319 6.319 21 C -0.059 4.059 22 H 0.072 0.928 23 H 0.054 0.946 24 H 0.015 0.985 25 H 0.122 0.878 26 H 0.053 0.947 27 H 0.123 0.877 28 H 0.110 0.890 29 H 0.268 0.732 30 H 0.064 0.936 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.203 -12.301 0.143 14.256 hybrid contribution -0.535 0.003 0.563 0.776 sum 6.669 -12.298 0.705 14.008 Atomic orbital electron populations 1.69958 1.06106 1.26990 1.50437 1.24996 0.94874 0.99404 0.95253 0.86467 0.79635 0.82945 0.78163 1.20587 1.21309 1.19813 1.21109 0.93510 0.89687 1.50817 0.91646 1.19748 0.89846 0.86578 0.96770 1.62138 1.28505 1.02202 1.33251 1.22018 0.94572 0.98843 0.91576 1.22710 1.00294 0.90888 1.05154 1.20995 0.80971 0.87848 0.84046 1.93040 1.62934 1.65404 1.95983 1.93019 1.72822 1.93868 1.58074 1.22205 1.00376 0.91191 0.99809 0.83850 1.23038 0.86164 0.85731 0.72538 1.90741 1.15508 1.86771 1.45576 1.84590 1.44852 1.18628 1.83811 1.21865 0.92756 0.88043 1.03245 0.92765 0.94645 0.98521 0.87781 0.94671 0.87746 0.89033 0.73203 0.93647 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.92 13.29 55.43 0.74 -25.19 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 20.85 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.51 -13.62 8.43 -34.44 -0.29 -13.91 16 8 H 0.07 1.68 7.14 -52.48 -0.37 1.31 16 9 C 0.19 4.83 4.72 -4.97 -0.02 4.81 16 10 N -0.54 -10.70 4.65 -236.11 -1.10 -11.79 16 11 C 0.06 1.03 5.19 -3.83 -0.02 1.01 16 12 C -0.15 -2.12 5.62 -26.65 -0.15 -2.27 16 13 C 0.30 4.38 1.64 -26.61 -0.04 4.34 16 14 F -0.19 -2.77 16.10 2.25 0.04 -2.73 16 15 F -0.20 -3.24 15.89 2.25 0.04 -3.21 16 16 C -0.12 -1.71 2.45 -91.69 -0.22 -1.93 16 17 H 0.14 1.85 8.14 -51.93 -0.42 1.43 16 18 C 0.48 7.05 7.32 36.00 0.26 7.31 16 19 O -0.50 -8.59 16.74 -18.75 -0.31 -8.90 16 20 O -0.51 -5.78 12.50 -39.24 -0.49 -6.28 16 21 C 0.07 1.25 3.92 -3.83 -0.02 1.23 16 22 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 23 H 0.04 0.94 7.98 -51.93 -0.41 0.53 16 24 H 0.00 -0.08 8.12 -51.93 -0.42 -0.50 16 25 H 0.10 1.93 6.72 -51.93 -0.35 1.58 16 26 H 0.04 0.65 7.88 -51.93 -0.41 0.24 16 27 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.41 2.70 9.10 45.56 0.41 3.12 16 30 H 0.05 0.87 7.82 -51.93 -0.41 0.47 16 31 H 0.09 1.68 7.99 -51.93 -0.41 1.26 16 LS Contribution 270.24 15.07 4.07 4.07 Total: -1.00 -30.89 270.24 -5.42 -36.31 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -2.78 Total: -0.17 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -0.60 Total: 2.05 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: -0.36 Total: -36.98 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.80 Total: -15.18 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.07 Total: -5.94 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.89 -5.42 -36.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717820929.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.414 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds