Wall clock time and date at job start Mon Mar 30 2020 03:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00123 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00183 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99994 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99989 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.46848 * 110.99750 * 66.04607 * 10 9 7 12 12 C 1.53045 * 109.51853 * 185.84278 * 11 10 9 13 13 C 1.53121 * 109.27659 * 300.81897 * 12 11 10 14 14 F 1.39896 * 109.52417 * 177.56534 * 13 12 11 15 15 F 1.39904 * 109.51936 * 297.68837 * 13 12 11 16 16 C 1.53118 * 109.16297 * 57.65627 * 13 12 11 17 17 H 1.09001 * 109.50177 * 62.28453 * 16 13 12 18 18 C 1.50699 * 109.50523 * 182.40423 * 16 13 12 19 19 O 1.20832 * 119.99652 * 119.99503 * 18 16 13 20 20 O 1.34224 * 120.00023 * 300.00171 * 18 16 13 21 21 C 1.46846 * 110.99938 * 190.25388 * 10 9 7 22 22 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 23 23 H 1.08992 * 109.46894 * 60.00097 * 9 7 2 24 24 H 1.09004 * 109.47113 * 300.00248 * 9 7 2 25 25 H 1.08996 * 109.46281 * 305.85079 * 11 10 9 26 26 H 1.08994 * 109.46340 * 65.83545 * 11 10 9 27 27 H 1.08996 * 109.50687 * 60.76000 * 12 11 10 28 28 H 1.09005 * 109.50033 * 180.88147 * 12 11 10 29 29 H 0.96698 * 116.99827 * 179.97438 * 20 18 16 30 30 H 1.08995 * 109.46359 * 294.17653 * 21 10 9 31 31 H 1.09001 * 109.45880 * 54.14768 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 2.9706 -3.6540 1.2524 12 6 4.0509 -4.7341 1.1591 13 6 3.3887 -6.0905 0.9019 14 9 4.3747 -7.0729 0.7605 15 9 2.5558 -6.4156 1.9780 16 6 2.5592 -6.0094 -0.3825 17 1 3.2150 -5.7950 -1.2263 18 6 1.8565 -7.3228 -0.6115 19 8 0.6499 -7.3614 -0.6630 20 8 2.5710 -8.4496 -0.7581 21 6 1.5222 -4.8924 -0.2446 22 1 -0.4849 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6246 -2.5571 0.8897 25 1 3.4399 -2.6848 1.4211 26 1 2.2999 -3.8820 2.0806 27 1 4.7302 -4.4996 0.3396 28 1 4.6084 -4.7729 2.0950 29 1 2.0760 -9.2676 -0.9024 30 1 0.8582 -5.1144 0.5908 31 1 0.9394 -4.8225 -1.1630 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717820929.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:34 Heat of formation + Delta-G solvation = -212.960756 kcal Electronic energy + Delta-G solvation = -19151.312485 eV Core-core repulsion = 15681.305180 eV Total energy + Delta-G solvation = -3470.007305 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.15756 -48.11734 -41.53538 -39.36552 -37.26725 -35.26356 -33.46243 -32.55925 -28.96674 -26.05588 -25.45747 -23.63502 -22.46486 -21.10578 -19.32997 -18.69472 -18.48534 -18.20789 -17.83303 -17.18872 -16.71517 -16.13607 -15.84708 -15.58969 -15.20870 -14.88167 -14.45033 -14.25169 -14.19161 -13.91969 -13.62563 -13.39955 -13.06354 -12.76678 -12.68658 -12.58193 -12.46660 -12.24750 -12.05215 -11.78906 -11.48916 -11.25230 -10.60033 -9.22951 -8.18963 -6.29504 0.88340 1.46269 1.47335 1.57995 1.71420 2.42649 2.48772 2.88533 2.95476 3.14545 3.27297 3.34896 3.72128 3.97484 4.21603 4.25941 4.41807 4.53767 4.57155 4.70105 4.93235 4.98466 5.19636 5.23385 5.41165 5.63911 5.99204 6.15544 6.44168 6.81139 6.85903 7.40549 8.92662 Molecular weight = 249.10amu Principal moments of inertia in cm(-1) A = 0.037788 B = 0.006060 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.797406 B = 4619.310772 C = 5040.042373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.258 1.258 7 C -0.521 4.521 8 H 0.075 0.925 9 C 0.207 3.793 10 N -0.532 5.532 11 C 0.057 3.943 12 C -0.141 4.141 13 C 0.300 3.700 14 F -0.185 7.185 15 F -0.209 7.209 16 C -0.113 4.113 17 H 0.170 0.830 18 C 0.493 3.507 19 O -0.533 6.533 20 O -0.496 6.496 21 C 0.074 3.926 22 H 0.264 0.736 23 H 0.008 0.992 24 H -0.036 1.036 25 H 0.096 0.904 26 H 0.022 0.978 27 H 0.125 0.875 28 H 0.118 0.882 29 H 0.432 0.568 30 H 0.025 0.975 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.618 -13.306 0.297 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.182 1.182 7 C -0.559 4.559 8 H 0.093 0.907 9 C 0.081 3.919 10 N -0.257 5.257 11 C -0.071 4.071 12 C -0.179 4.179 13 C 0.264 3.736 14 F -0.165 7.165 15 F -0.190 7.190 16 C -0.133 4.133 17 H 0.187 0.813 18 C 0.335 3.665 19 O -0.423 6.423 20 O -0.309 6.309 21 C -0.055 4.055 22 H 0.073 0.927 23 H 0.027 0.973 24 H -0.018 1.018 25 H 0.114 0.886 26 H 0.040 0.960 27 H 0.144 0.856 28 H 0.136 0.864 29 H 0.295 0.705 30 H 0.044 0.956 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.697 -12.825 -0.004 16.079 hybrid contribution -1.308 0.034 0.609 1.443 sum 8.389 -12.791 0.605 15.309 Atomic orbital electron populations 1.70104 1.07958 1.27959 1.51734 1.25949 0.95666 1.03383 0.94794 0.85336 0.78633 0.78004 0.78361 1.20003 1.21380 1.18209 1.21459 0.94045 0.90367 1.50070 0.90688 1.19398 0.90032 0.88464 0.93957 1.62052 1.27168 1.01805 1.34652 1.22036 0.95043 1.00112 0.89921 1.22663 0.99001 0.88655 1.07560 1.21002 0.80867 0.88357 0.83396 1.93057 1.62456 1.65116 1.95903 1.93006 1.73331 1.93995 1.58686 1.22111 0.99687 0.90381 1.01105 0.81309 1.22859 0.85547 0.86364 0.71780 1.90744 1.16914 1.87316 1.47310 1.84524 1.44559 1.18904 1.82951 1.21741 0.93532 0.88215 1.02006 0.92742 0.97341 1.01780 0.88590 0.96007 0.85650 0.86365 0.70519 0.95642 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.52 13.29 21.45 0.28 -55.24 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.97 42.52 29.54 68.60 2.03 44.54 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.52 -27.89 8.43 25.60 0.22 -27.67 16 8 H 0.08 3.79 7.14 -2.91 -0.02 3.77 16 9 C 0.21 10.66 4.72 85.56 0.40 11.06 16 10 N -0.53 -21.34 4.65 -900.91 -4.19 -25.53 16 11 C 0.06 1.97 5.19 86.33 0.45 2.42 16 12 C -0.14 -3.51 5.62 30.65 0.17 -3.34 16 13 C 0.30 8.09 1.64 30.67 0.05 8.15 16 14 F -0.18 -4.64 16.10 44.97 0.72 -3.92 16 15 F -0.21 -6.59 15.89 44.97 0.71 -5.87 16 16 C -0.11 -3.14 2.45 -11.49 -0.03 -3.17 16 17 H 0.17 3.85 8.14 -2.39 -0.02 3.83 16 18 C 0.49 13.53 7.32 71.24 0.52 14.06 16 19 O -0.53 -18.13 16.74 21.95 0.37 -17.76 16 20 O -0.50 -9.88 12.50 -51.36 -0.64 -10.52 16 21 C 0.07 2.66 3.92 86.33 0.34 3.00 16 22 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 23 H 0.01 0.47 7.98 -2.39 -0.02 0.46 16 24 H -0.04 -2.02 8.12 -2.38 -0.02 -2.04 16 25 H 0.10 3.48 6.72 -2.39 -0.02 3.46 16 26 H 0.02 0.81 7.88 -2.39 -0.02 0.79 16 27 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.12 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.43 4.44 9.10 -74.06 -0.67 3.77 16 30 H 0.03 1.01 7.82 -2.39 -0.02 1.00 16 31 H 0.08 3.16 7.99 -2.39 -0.02 3.14 16 Total: -1.00 -67.20 270.24 2.36 -64.84 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 0.49 Total: 4.48 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 2.58 Total: 4.97 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -3.90 Total: -80.76 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.27 Total: -28.28 kcal Atomic # 9 Polarization: -11.23 SS G_CDS: 1.44 Total: -9.79 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -67.20 2.36 -64.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717820929.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.116 kcal (2) G-P(sol) polarization free energy of solvation -67.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds