Wall clock time and date at job start Mon Mar 30 2020 04:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53003 * 115.55116 * 121.26906 * 3 2 1 5 5 C 1.50700 * 109.47328 * 34.32205 * 4 3 2 6 6 O 1.20835 * 119.99600 * 0.02562 * 5 4 3 7 7 O 1.34228 * 120.00368 * 180.02562 * 5 4 3 8 8 C 1.45198 * 117.00205 * 180.02562 * 7 5 4 9 9 C 1.52991 * 109.47075 * 179.97438 * 8 7 5 10 10 C 1.50701 * 115.55544 * 294.88682 * 9 8 7 11 11 H 1.07995 * 119.99892 * 95.15843 * 10 9 8 12 12 C 1.37875 * 119.99625 * 274.89404 * 10 9 8 13 13 N 1.31516 * 120.00645 * 6.38641 * 12 10 9 14 14 Si 1.86804 * 119.99966 * 186.39037 * 12 10 9 15 15 H 1.48497 * 109.46911 * 59.99497 * 14 12 10 16 16 H 1.48501 * 109.47278 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46934 * 299.99733 * 14 12 10 18 18 C 1.52999 * 117.50107 * 80.55676 * 9 8 7 19 19 C 1.53002 * 117.49851 * 149.21518 * 9 8 7 20 20 C 1.53007 * 117.51789 * 266.96364 * 3 2 1 21 21 C 1.52997 * 59.99839 * 107.48241 * 20 3 2 22 22 H 1.09004 * 109.46971 * 274.32807 * 4 3 2 23 23 H 1.08998 * 109.47214 * 154.32822 * 4 3 2 24 24 H 1.09001 * 109.46840 * 59.99792 * 8 7 5 25 25 H 1.09000 * 109.47129 * 299.99899 * 8 7 5 26 26 H 0.96998 * 120.00543 * 180.02562 * 13 12 10 27 27 H 1.08998 * 117.50651 * 215.00344 * 18 9 8 28 28 H 1.09007 * 117.49575 * 0.02562 * 18 9 8 29 29 H 1.09004 * 117.50100 * 359.97438 * 19 9 8 30 30 H 1.09000 * 117.49932 * 144.97481 * 19 9 8 31 31 H 1.08998 * 117.49938 * 214.97473 * 20 3 2 32 32 H 1.08999 * 117.49717 * 359.97438 * 20 3 2 33 33 H 1.08994 * 117.50327 * 252.50676 * 21 20 3 34 34 H 1.09005 * 117.51792 * 107.47906 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2676 0.7175 -1.1799 5 6 2.4251 1.8998 -1.5841 6 8 1.4022 2.1443 -0.9891 7 8 2.8109 2.6812 -2.6050 8 6 1.9508 3.8025 -2.9385 9 6 2.5498 4.5716 -4.1176 10 6 3.8705 5.2463 -3.8502 11 1 4.7933 4.7478 -4.1072 12 6 3.9003 6.5023 -3.2824 13 7 2.7867 7.0594 -2.8590 14 14 5.5226 7.4131 -3.1145 15 1 6.1195 7.6130 -4.4594 16 1 5.2855 8.7334 -2.4774 17 1 6.4525 6.6171 -2.2736 18 6 2.3159 4.0079 -5.5207 19 6 1.5790 5.2718 -5.0706 20 6 3.3149 0.0729 1.3551 21 6 3.3150 -1.2348 0.5608 22 1 3.3546 0.0291 -2.0206 23 1 4.2598 1.0612 -0.8875 24 1 1.8678 4.4654 -2.0772 25 1 0.9616 3.4336 -3.2097 26 1 2.8077 7.9432 -2.4599 27 1 3.1172 4.1250 -6.2502 28 1 1.7349 3.0893 -5.6036 29 1 0.5135 5.1843 -4.8577 30 1 1.8954 6.2207 -5.5037 31 1 4.2498 0.6310 1.4059 32 1 2.6899 0.1203 2.2468 33 1 2.6903 -2.0480 0.9301 34 1 4.2499 -1.5373 0.0889 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815964500.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:57 Heat of formation + Delta-G solvation = -8.047721 kcal Electronic energy + Delta-G solvation = -17695.913277 eV Core-core repulsion = 14789.021198 eV Total energy + Delta-G solvation = -2906.892079 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.15920 -38.40966 -36.70694 -35.41600 -35.16824 -31.98793 -30.21549 -26.76020 -25.27098 -23.50019 -22.81090 -21.26162 -20.64243 -19.29041 -17.58403 -16.96510 -16.22830 -15.94123 -15.24223 -15.00852 -14.62593 -13.95250 -13.82966 -13.65048 -12.98234 -12.79056 -12.63485 -12.14667 -11.96673 -11.79603 -11.69066 -11.61232 -10.99562 -10.91233 -10.88087 -10.58088 -10.32507 -10.28839 -9.94281 -9.88137 -9.55435 -8.85630 -8.49474 -8.23750 -6.09122 -4.15012 2.61787 2.71055 2.99235 3.17828 3.28130 3.33467 3.35329 3.72165 3.91018 4.29747 4.36657 4.59123 4.69271 5.17249 5.21004 5.26860 5.31374 5.40971 5.47541 5.54704 5.63524 5.77245 5.96597 6.22332 6.31216 6.50515 6.62966 6.70613 7.00957 7.22276 7.33609 7.44227 7.83586 7.86097 8.30419 8.39423 8.86513 9.50966 11.00282 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.025358 B = 0.005699 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.933513 B = 4912.295525 C = 5449.338486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.251 3.749 3 C -0.041 4.041 4 C -0.073 4.073 5 C 0.448 3.552 6 O -0.513 6.513 7 O -0.335 6.335 8 C 0.117 3.883 9 C 0.037 3.963 10 C -0.491 4.491 11 H 0.063 0.937 12 C 0.069 3.931 13 N -0.882 5.882 14 Si 0.893 3.107 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.205 4.205 19 C -0.146 4.146 20 C -0.145 4.145 21 C -0.143 4.143 22 H 0.116 0.884 23 H 0.124 0.876 24 H 0.076 0.924 25 H 0.038 0.962 26 H 0.262 0.738 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.720 -13.432 4.719 14.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.066 4.066 3 C -0.044 4.044 4 C -0.112 4.112 5 C 0.291 3.709 6 O -0.402 6.402 7 O -0.250 6.250 8 C 0.044 3.956 9 C 0.037 3.963 10 C -0.528 4.528 11 H 0.081 0.919 12 C -0.135 4.135 13 N -0.518 5.518 14 Si 0.721 3.279 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.242 4.242 19 C -0.183 4.183 20 C -0.183 4.183 21 C -0.181 4.181 22 H 0.134 0.866 23 H 0.142 0.858 24 H 0.095 0.905 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.135 0.865 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.596 -13.113 4.935 14.249 hybrid contribution 0.983 0.872 0.106 1.318 sum 3.579 -12.241 5.041 13.714 Atomic orbital electron populations 1.81127 1.12207 1.09828 1.07165 1.27103 0.92951 0.92372 0.94167 1.17979 0.83182 1.05390 0.97871 1.20884 0.99336 0.93767 0.97202 1.23366 0.84787 0.84042 0.78701 1.90662 1.25540 1.70832 1.53139 1.86499 1.52639 1.39297 1.46529 1.22908 0.89246 0.83259 1.00187 1.18781 0.96612 0.96147 0.84792 1.20336 0.90351 1.00597 1.41548 0.91860 1.25025 0.96394 0.97347 0.94690 1.69988 1.26492 1.16047 1.39268 0.86641 0.83900 0.78947 0.78430 1.20114 1.21290 1.20103 1.23008 1.03337 0.96256 1.01623 1.22547 0.95459 0.95516 1.04811 1.23306 1.02114 0.99943 0.92940 1.23228 1.02049 0.91059 1.01733 0.86579 0.85831 0.90523 0.94411 0.92800 0.90005 0.91571 0.91674 0.89399 0.86523 0.87738 0.87663 0.86486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.95 18.35 42.15 0.77 -7.18 16 2 C 0.25 3.91 12.05 -20.76 -0.25 3.65 16 3 C -0.04 -0.44 2.26 -157.29 -0.36 -0.79 16 4 C -0.07 -0.83 5.99 -27.88 -0.17 -1.00 16 5 C 0.45 8.12 7.78 36.01 0.28 8.40 16 6 O -0.51 -10.94 13.31 -18.76 -0.25 -11.19 16 7 O -0.33 -7.08 10.16 -39.25 -0.40 -7.47 16 8 C 0.12 2.79 5.29 37.15 0.20 2.99 16 9 C 0.04 0.92 1.61 -155.66 -0.25 0.67 16 10 C -0.49 -13.16 8.77 -34.44 -0.30 -13.46 16 11 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 12 C 0.07 1.85 5.39 -17.82 -0.10 1.76 16 13 N -0.88 -24.80 12.93 55.43 0.72 -24.08 16 14 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 18 C -0.20 -4.45 9.96 -26.70 -0.27 -4.72 16 19 C -0.15 -3.40 9.43 -26.69 -0.25 -3.66 16 20 C -0.14 -1.13 9.86 -26.73 -0.26 -1.40 16 21 C -0.14 -0.91 9.93 -26.73 -0.27 -1.18 16 22 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.12 1.07 7.90 -51.93 -0.41 0.66 16 24 H 0.08 2.03 8.13 -51.93 -0.42 1.60 16 25 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 28 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 29 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 31 H 0.12 0.72 8.05 -51.93 -0.42 0.30 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 307.35 15.07 4.63 4.63 Total: -1.00 -33.02 307.35 -6.14 -39.16 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -4.60 Total: -0.80 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -1.99 Total: -8.73 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 1.49 Total: -31.26 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.65 Total: -18.67 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.02 -6.14 -39.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815964500.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.114 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds