Wall clock time and date at job start Mon Mar 30 2020 03:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99681 * 2 1 4 4 H 1.48499 * 109.47260 * 269.99754 * 3 2 1 5 5 H 1.48505 * 109.47264 * 29.99920 * 3 2 1 6 6 H 1.48503 * 109.47084 * 150.00180 * 3 2 1 7 7 C 1.37878 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99674 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47043 * 60.00259 * 9 7 2 11 11 N 1.46906 * 109.46893 * 180.02562 * 9 7 2 12 12 C 1.46901 * 110.99793 * 205.00308 * 11 9 7 13 13 C 1.50701 * 109.46921 * 179.97438 * 12 11 9 14 14 N 1.30492 * 125.65283 * 274.69058 * 13 12 11 15 15 C 1.34124 * 109.25914 * 179.89545 * 14 13 12 16 16 C 1.34668 * 108.01904 * 0.36962 * 15 14 13 17 17 N 1.35045 * 125.64957 * 94.99858 * 13 12 11 18 18 H 0.97007 * 126.39689 * 359.97438 * 17 13 12 19 19 C 1.52995 * 109.47458 * 300.00113 * 9 7 2 20 20 F 1.39898 * 109.47295 * 300.00123 * 19 9 7 21 21 F 1.39902 * 109.47185 * 60.00034 * 19 9 7 22 22 F 1.39902 * 109.47236 * 180.02562 * 19 9 7 23 23 H 0.97002 * 120.00598 * 359.97438 * 1 2 3 24 24 H 1.00899 * 110.99995 * 81.04706 * 11 9 7 25 25 H 1.09002 * 109.47401 * 59.99808 * 12 11 9 26 26 H 1.09001 * 109.46874 * 299.99821 * 12 11 9 27 27 H 1.08003 * 125.98991 * 180.18918 * 15 14 13 28 28 H 1.08002 * 126.58985 * 179.81756 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 2.2058 -3.6157 -0.0005 12 6 1.6032 -4.8235 -0.5802 13 6 2.6101 -5.9447 -0.5638 14 7 3.5156 -6.1672 -1.4767 15 6 4.2349 -7.2457 -1.1327 16 6 3.7517 -7.7139 0.0339 17 7 2.7210 -6.8890 0.3952 18 1 2.1725 -6.9680 1.1914 19 6 0.3719 -2.5805 1.2489 20 9 1.1766 -2.5067 2.3910 21 9 -0.5372 -1.5172 1.2495 22 9 -0.3271 -3.7924 1.2492 23 1 -0.4851 0.8400 0.0004 24 1 2.5522 -3.7952 0.9300 25 1 1.3014 -4.6217 -1.6080 26 1 0.7297 -5.1105 0.0052 27 1 5.0557 -7.6666 -1.6943 28 1 4.1093 -8.5745 0.5797 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922649225.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:22 Heat of formation + Delta-G solvation = -95.140027 kcal Electronic energy + Delta-G solvation = -18724.341187 eV Core-core repulsion = 15168.275418 eV Total energy + Delta-G solvation = -3556.065769 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.078 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.51384 -48.15794 -47.73357 -42.89708 -37.59556 -34.74770 -33.39413 -31.76054 -29.17570 -26.53194 -25.77431 -22.92801 -22.41867 -21.56366 -19.45167 -18.81906 -18.76141 -18.73657 -17.76513 -16.73356 -16.24047 -15.53266 -15.47716 -15.07737 -14.91879 -14.66260 -14.56413 -14.40735 -14.34408 -14.03281 -13.94871 -13.75154 -13.22604 -12.83348 -12.53739 -12.47929 -12.06258 -11.52517 -10.99303 -10.91962 -10.58340 -9.49758 -9.27301 -8.14759 -6.37799 1.11016 1.46291 1.47198 1.58287 2.16403 2.26189 2.39853 2.41246 2.96950 3.30042 3.54821 3.71727 3.78153 4.13214 4.17534 4.40944 4.50077 4.64800 4.76115 4.88365 5.19387 5.59767 5.75994 5.87107 6.14689 6.34080 6.51950 6.70495 7.23412 7.30865 8.77120 Molecular weight = 249.08amu Principal moments of inertia in cm(-1) A = 0.030247 B = 0.007128 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.479457 B = 3927.455568 C = 4497.080518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.014 3.986 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.532 4.532 8 H 0.070 0.930 9 C 0.198 3.802 10 H 0.059 0.941 11 N -0.663 5.663 12 C 0.135 3.865 13 C 0.197 3.803 14 N -0.514 5.514 15 C -0.064 4.064 16 C -0.034 4.034 17 N -0.556 5.556 18 H 0.431 0.569 19 C 0.397 3.603 20 F -0.206 7.206 21 F -0.151 7.151 22 F -0.219 7.219 23 H 0.265 0.735 24 H 0.337 0.663 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.187 0.813 28 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.772 -12.148 3.137 12.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.190 4.190 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.570 4.570 8 H 0.089 0.911 9 C 0.087 3.913 10 H 0.077 0.923 11 N -0.293 5.293 12 C 0.005 3.995 13 C -0.067 4.067 14 N -0.235 5.235 15 C -0.211 4.211 16 C -0.169 4.169 17 N -0.161 5.161 18 H 0.271 0.729 19 C 0.340 3.660 20 F -0.188 7.188 21 F -0.132 7.132 22 F -0.201 7.201 23 H 0.075 0.925 24 H 0.156 0.844 25 H 0.109 0.891 26 H 0.081 0.919 27 H 0.204 0.796 28 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 3.020 -11.381 1.820 11.915 hybrid contribution -0.907 0.094 1.994 2.193 sum 2.114 -11.287 3.814 12.100 Atomic orbital electron populations 1.70463 1.06865 1.27649 1.46222 1.25863 0.95907 1.03060 0.94145 0.85344 0.78454 0.78165 0.78468 1.19669 1.20759 1.19386 1.21023 0.93997 0.88784 1.53164 0.91144 1.20238 0.89646 0.92098 0.89357 0.92306 1.60511 1.36879 1.04527 1.27394 1.20406 0.91550 0.85404 1.02124 1.22878 1.00584 0.94806 0.88480 1.70187 1.07190 1.17792 1.28345 1.22892 1.03863 0.96194 0.98195 1.23399 0.93073 1.00378 1.00020 1.43353 1.28406 1.22911 1.21410 0.72904 1.24157 0.80986 0.72438 0.88449 1.92987 1.74225 1.96136 1.55477 1.93393 1.68999 1.54521 1.96319 1.92984 1.81821 1.48215 1.97035 0.92479 0.84396 0.89061 0.91865 0.79559 0.76265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.05 9.50 21.45 0.20 -47.84 15 2 C 0.01 0.75 5.20 84.66 0.44 1.19 15 3 Si 0.97 42.61 29.54 68.60 2.03 44.64 15 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 7 C -0.53 -28.26 8.58 25.60 0.22 -28.04 15 8 H 0.07 3.80 7.81 -2.91 -0.02 3.77 15 9 C 0.20 9.51 2.26 44.17 0.10 9.61 15 10 H 0.06 3.02 7.80 -2.39 -0.02 3.00 15 11 N -0.66 -27.39 6.22 -499.44 -3.10 -30.50 15 12 C 0.14 4.76 6.01 85.56 0.51 5.27 15 13 C 0.20 6.33 7.67 138.13 1.06 7.39 15 14 N -0.51 -18.13 11.25 -188.13 -2.12 -20.25 15 15 C -0.06 -1.68 11.87 83.52 0.99 -0.69 15 16 C -0.03 -0.68 12.04 83.09 1.00 0.32 15 17 N -0.56 -12.91 6.15 -186.28 -1.15 -14.05 15 18 H 0.43 7.39 8.96 -92.70 -0.83 6.56 15 19 C 0.40 18.69 2.74 71.98 0.20 18.88 15 20 F -0.21 -9.56 16.31 44.97 0.73 -8.83 15 21 F -0.15 -8.02 12.91 44.97 0.58 -7.44 15 22 F -0.22 -9.03 15.04 44.97 0.68 -8.35 15 23 H 0.27 13.88 8.31 -92.71 -0.77 13.11 15 24 H 0.34 13.40 7.87 -89.69 -0.71 12.70 15 25 H 0.09 3.37 8.06 -2.39 -0.02 3.35 15 26 H 0.06 2.05 6.02 -2.39 -0.01 2.03 15 27 H 0.19 3.83 8.06 -2.91 -0.02 3.81 15 28 H 0.22 2.17 8.06 -2.91 -0.02 2.15 15 Total: -1.00 -63.54 255.56 2.07 -61.47 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -0.31 Total: 17.22 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 4.52 Total: 13.93 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -6.16 Total: -112.64 kcal Atomic # 9 Polarization: -26.61 SS G_CDS: 1.99 Total: -24.62 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -63.54 2.07 -61.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922649225.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.667 kcal (2) G-P(sol) polarization free energy of solvation -63.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds