Wall clock time and date at job start Mon Mar 30 2020 04:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48499 * 109.47170 * 269.99675 * 3 2 1 5 5 H 1.48502 * 109.47245 * 29.99515 * 3 2 1 6 6 H 1.48508 * 109.47285 * 149.99732 * 3 2 1 7 7 C 1.37885 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46760 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99544 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 9 14 14 N 1.46893 * 109.47176 * 180.02562 * 13 11 10 15 15 C 1.46903 * 110.99924 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.47245 * 179.97438 * 15 14 13 17 17 C 1.38678 * 120.41753 * 269.72570 * 16 15 14 18 18 C 1.38626 * 118.41843 * 179.78412 * 17 16 15 19 19 C 1.38227 * 119.16245 * 0.50658 * 18 17 16 20 20 N 1.31858 * 120.76204 * 359.73021 * 19 18 17 21 21 C 1.31885 * 121.72557 * 359.97438 * 20 19 18 22 22 H 0.96996 * 120.00505 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.46805 * 59.99757 * 9 7 2 24 24 H 1.08992 * 109.46894 * 299.99907 * 9 7 2 25 25 H 0.96994 * 120.00700 * 0.02562 * 10 9 7 26 26 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 27 27 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 28 28 H 1.00893 * 111.00654 * 56.04333 * 14 13 11 29 29 H 1.08993 * 109.46933 * 299.99334 * 15 14 13 30 30 H 1.09003 * 109.46864 * 60.00013 * 15 14 13 31 31 H 1.07997 * 120.79104 * 0.02562 * 17 16 15 32 32 H 1.07997 * 120.42166 * 180.21701 * 18 17 16 33 33 H 1.08002 * 119.61924 * 179.74934 * 19 18 17 34 34 H 1.08004 * 119.61476 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5616 -5.1050 -0.0009 13 6 2.7333 -6.0288 0.0006 14 7 1.9989 -7.3009 -0.0008 15 6 2.9234 -8.4425 -0.0009 16 6 2.1354 -9.7271 -0.0016 17 6 1.7727 -10.3291 1.1939 18 6 1.0442 -11.5075 1.1449 19 6 0.7150 -12.0451 -0.0853 20 7 1.0812 -11.4476 -1.2022 21 6 1.7696 -10.3228 -1.1935 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5568 0.8902 25 1 3.1568 -3.4354 0.0009 26 1 3.3606 -5.9709 -0.8889 27 1 3.3594 -5.9711 0.8910 28 1 1.3633 -7.3508 -0.7827 29 1 3.5519 -8.4010 -0.8904 30 1 3.5507 -8.4021 0.8896 31 1 2.0479 -9.8882 2.1406 32 1 0.7418 -12.0017 2.0562 33 1 0.1512 -12.9651 -0.1321 34 1 2.0514 -9.8622 -2.1290 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020563328.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:39 Heat of formation + Delta-G solvation = -32.633655 kcal Electronic energy + Delta-G solvation = -16701.564262 eV Core-core repulsion = 13825.898808 eV Total energy + Delta-G solvation = -2875.665454 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.09266 -40.45397 -37.05937 -36.05396 -34.34269 -33.47746 -32.49869 -29.92737 -28.05578 -25.64005 -24.47732 -24.12115 -22.62575 -21.38188 -19.06927 -18.04611 -17.63173 -17.41341 -17.14158 -16.73309 -16.38206 -15.78509 -15.57077 -15.28124 -14.70310 -14.47493 -14.18453 -14.02340 -13.91755 -13.88088 -13.15724 -12.94561 -12.91101 -12.69198 -12.39516 -12.22363 -11.48436 -10.80159 -10.77768 -10.70063 -10.37310 -10.00845 -9.81670 -9.38110 -8.28969 -6.45741 0.15984 0.38320 1.43513 1.45937 1.57181 1.80643 2.29939 2.50283 2.88384 3.05986 3.42863 3.56822 3.84947 3.95945 4.00656 4.12139 4.15274 4.39340 4.47058 4.55714 4.65950 4.77407 4.91131 5.11728 5.22327 5.24696 5.38459 5.49536 5.68668 5.79341 5.85340 5.93154 6.24223 6.66074 6.95628 7.03868 7.24119 7.54060 8.83337 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.065427 B = 0.003085 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.853454 B = 9073.329950 C = 9195.598995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.708 5.708 11 C 0.490 3.510 12 O -0.596 6.596 13 C 0.058 3.942 14 N -0.688 5.688 15 C 0.108 3.892 16 C -0.140 4.140 17 C -0.064 4.064 18 C -0.173 4.173 19 C 0.082 3.918 20 N -0.517 5.517 21 C 0.089 3.911 22 H 0.268 0.732 23 H -0.015 1.015 24 H -0.015 1.015 25 H 0.410 0.590 26 H 0.090 0.910 27 H 0.127 0.873 28 H 0.343 0.657 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.149 0.851 32 H 0.161 0.839 33 H 0.176 0.824 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.568 -20.172 1.475 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.359 5.359 11 C 0.277 3.723 12 O -0.477 6.477 13 C -0.074 4.074 14 N -0.320 5.320 15 C -0.021 4.021 16 C -0.143 4.143 17 C -0.091 4.091 18 C -0.192 4.192 19 C -0.075 4.075 20 N -0.226 5.226 21 C -0.068 4.068 22 H 0.077 0.923 23 H 0.003 0.997 24 H 0.003 0.997 25 H 0.245 0.755 26 H 0.108 0.892 27 H 0.145 0.855 28 H 0.161 0.839 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.167 0.833 32 H 0.179 0.821 33 H 0.193 0.807 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.274 -20.582 1.356 22.616 hybrid contribution 0.511 1.460 -0.160 1.555 sum 9.785 -19.123 1.197 21.514 Atomic orbital electron populations 1.70140 1.08348 1.28564 1.50057 1.26095 0.95767 1.04011 0.93895 0.85147 0.78515 0.76902 0.78590 1.19609 1.21081 1.17766 1.21640 0.94371 0.90541 1.52754 0.89629 1.18505 0.88753 0.84492 0.93900 1.46164 1.11192 1.05492 1.73049 1.21521 0.89997 0.85046 0.75691 1.90651 1.19589 1.85429 1.51998 1.21784 0.93876 0.86427 1.05322 1.60154 1.19721 1.00480 1.51686 1.20874 0.92593 0.85166 1.03427 1.20904 1.01087 0.97815 0.94447 1.21840 0.94205 0.94169 0.98879 1.22484 0.99337 0.96994 1.00411 1.23239 0.96608 0.99803 0.87854 1.67684 1.11813 1.10252 1.32816 1.22918 0.93973 0.91597 0.98340 0.92277 0.99669 0.99731 0.75458 0.89220 0.85534 0.83853 0.91957 0.88172 0.83290 0.82092 0.80715 0.82165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.99 42.05 29.54 68.60 2.03 44.08 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.56 -30.01 9.28 25.60 0.24 -29.77 16 8 H 0.09 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.27 14.63 5.43 85.63 0.46 15.10 16 10 N -0.71 -29.09 5.55 -466.80 -2.59 -31.68 16 11 C 0.49 19.00 7.87 87.66 0.69 19.69 16 12 O -0.60 -29.65 16.20 -3.02 -0.05 -29.70 16 13 C 0.06 1.38 6.17 85.56 0.53 1.91 16 14 N -0.69 -16.93 6.11 -521.98 -3.19 -20.12 16 15 C 0.11 1.80 5.84 85.56 0.50 2.30 16 16 C -0.14 -2.67 5.41 -19.77 -0.11 -2.78 16 17 C -0.06 -1.13 9.86 22.47 0.22 -0.91 16 18 C -0.17 -2.70 10.11 22.36 0.23 -2.48 16 19 C 0.08 1.48 11.18 84.69 0.95 2.42 16 20 N -0.52 -11.87 10.36 -195.84 -2.03 -13.89 16 21 C 0.09 1.85 10.86 84.67 0.92 2.77 16 22 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 23 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 24 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 25 H 0.41 13.44 8.32 -92.71 -0.77 12.67 16 26 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.34 9.55 8.42 -89.70 -0.76 8.79 16 29 H 0.06 0.82 8.09 -2.39 -0.02 0.80 16 30 H 0.10 1.36 8.09 -2.39 -0.02 1.34 16 31 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -76.35 303.47 -0.87 -77.22 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -0.41 Total: 21.51 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 5.09 Total: 8.82 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -7.53 Total: -121.93 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.05 Total: -29.70 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -76.35 -0.87 -77.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020563328.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.590 kcal (2) G-P(sol) polarization free energy of solvation -76.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds