Wall clock time and date at job start Mon Mar 30 2020 03:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47220 * 2 1 4 4 C 1.53004 * 109.47292 * 120.00091 * 2 1 3 5 5 O 1.42901 * 109.46661 * 294.99939 * 4 2 1 6 6 C 1.35675 * 116.99727 * 179.97438 * 5 4 2 7 7 C 1.39315 * 119.82023 * 359.72686 * 6 5 4 8 8 C 1.36439 * 120.18603 * 179.75680 * 7 6 5 9 9 C 1.40827 * 119.80974 * 0.51833 * 8 7 6 10 10 C 1.41218 * 120.17841 * 179.71884 * 9 8 7 11 11 H 1.07998 * 120.00429 * 155.16536 * 10 9 8 12 12 C 1.39890 * 119.99832 * 335.16447 * 10 9 8 13 13 N 1.30885 * 119.99837 * 342.15843 * 12 10 9 14 14 Si 1.86804 * 120.00135 * 162.16032 * 12 10 9 15 15 H 1.48499 * 109.47094 * 94.65470 * 14 12 10 16 16 H 1.48502 * 109.47117 * 214.65460 * 14 12 10 17 17 H 1.48497 * 109.47064 * 334.65186 * 14 12 10 18 18 C 1.40837 * 119.64657 * 359.73504 * 9 8 7 19 19 C 1.36436 * 119.80911 * 0.02562 * 18 9 8 20 20 C 1.50700 * 109.47321 * 239.99988 * 2 1 3 21 21 N 1.34775 * 119.99930 * 60.00176 * 20 2 1 22 22 O 1.21287 * 120.00011 * 240.00217 * 20 2 1 23 23 H 1.09002 * 109.46595 * 300.00040 * 1 2 3 24 24 H 1.09000 * 109.47220 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46698 * 60.00057 * 1 2 3 26 26 H 1.08996 * 109.46984 * 54.99499 * 4 2 1 27 27 H 1.08993 * 109.47308 * 175.00331 * 4 2 1 28 28 H 1.08002 * 119.90453 * 0.02562 * 7 6 5 29 29 H 1.08000 * 120.08947 * 180.25230 * 8 7 6 30 30 H 0.97006 * 119.99419 * 180.02562 * 13 12 10 31 31 H 1.08001 * 120.09369 * 179.97438 * 18 9 8 32 32 H 1.07995 * 119.90857 * 179.97438 * 19 18 9 33 33 H 0.97002 * 120.00195 * 359.97438 * 21 20 2 34 34 H 0.96998 * 120.00330 * 180.02562 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 1.6620 0.0168 2.4130 6 6 2.0391 -0.4905 3.6135 7 6 2.7567 -1.6834 3.6670 8 6 3.1440 -2.1977 4.8699 9 6 2.8068 -1.5249 6.0602 10 6 3.1985 -2.0533 7.3098 11 1 3.3122 -1.3988 8.1613 12 6 3.4393 -3.4247 7.4447 13 7 2.9802 -4.2610 6.5487 14 14 4.4161 -4.0624 8.9038 15 1 3.4825 -4.4730 9.9831 16 1 5.2298 -5.2309 8.4821 17 1 5.3126 -2.9904 9.4059 18 6 2.0765 -0.3222 5.9977 19 6 1.7012 0.1812 4.7864 20 6 2.0324 -0.7104 -1.2304 21 7 1.7068 -0.2499 -2.4545 22 8 2.7297 -1.6965 -1.1191 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 1.6054 -1.7198 1.2952 27 1 3.1263 -0.7994 1.2056 28 1 3.0109 -2.2002 2.7533 29 1 3.7038 -3.1205 4.9093 30 1 3.1469 -5.2120 6.6425 31 1 1.8137 0.1995 6.9060 32 1 1.1408 1.1030 4.7367 33 1 1.1489 0.5385 -2.5436 34 1 2.0299 -0.7073 -3.2465 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037227511.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:12 Heat of formation + Delta-G solvation = -94.580751 kcal Electronic energy + Delta-G solvation = -17430.890580 eV Core-core repulsion = 14520.246148 eV Total energy + Delta-G solvation = -2910.644433 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.08183 -40.23952 -38.22117 -35.51307 -35.04331 -33.92670 -31.55198 -30.97480 -27.86483 -26.59751 -24.84217 -23.03828 -22.26365 -20.81027 -19.28577 -18.98329 -18.20298 -17.57912 -17.00649 -16.94185 -16.09921 -15.78759 -15.72603 -15.08785 -14.66763 -14.44402 -14.17694 -13.90121 -13.59330 -13.28600 -13.20178 -12.91498 -12.73915 -12.50120 -12.24220 -11.98518 -11.68197 -11.54854 -11.22276 -11.02097 -10.87004 -10.70303 -9.57468 -8.91998 -8.60389 -6.23215 0.93021 1.04194 1.39262 1.49721 1.53774 1.55788 2.14028 2.22705 2.72402 2.96127 3.61955 3.69527 3.83228 4.06166 4.23606 4.34210 4.39379 4.56281 4.59099 4.85890 4.87080 4.97977 5.04140 5.14635 5.30497 5.36583 5.50018 5.66791 5.86185 5.97911 6.06246 6.22022 6.39261 6.54404 6.76891 6.94740 7.07911 7.29384 8.36694 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.040870 B = 0.004403 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.936325 B = 6357.147657 C = 6851.929475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.102 4.102 3 H 0.132 0.868 4 C 0.082 3.918 5 O -0.321 6.321 6 C -0.002 4.002 7 C -0.179 4.179 8 C -0.158 4.158 9 C 0.056 3.944 10 C -0.499 4.499 11 H 0.079 0.921 12 C 0.032 3.968 13 N -0.834 5.834 14 Si 0.983 3.017 15 H -0.261 1.261 16 H -0.269 1.269 17 H -0.257 1.257 18 C -0.203 4.203 19 C -0.114 4.114 20 C 0.526 3.474 21 N -0.826 5.826 22 O -0.595 6.595 23 H 0.070 0.930 24 H 0.048 0.952 25 H 0.100 0.900 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.286 0.714 31 H 0.115 0.885 32 H 0.129 0.871 33 H 0.421 0.579 34 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.204 8.116 -13.695 16.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.123 4.123 3 H 0.149 0.851 4 C 0.005 3.995 5 O -0.237 6.237 6 C -0.046 4.046 7 C -0.198 4.198 8 C -0.178 4.178 9 C 0.054 3.946 10 C -0.529 4.529 11 H 0.098 0.902 12 C -0.181 4.181 13 N -0.461 5.461 14 Si 0.803 3.197 15 H -0.186 1.186 16 H -0.194 1.194 17 H -0.181 1.181 18 C -0.222 4.222 19 C -0.133 4.133 20 C 0.311 3.689 21 N -0.390 5.390 22 O -0.476 6.476 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.118 0.882 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.133 0.867 32 H 0.147 0.853 33 H 0.253 0.747 34 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.926 7.459 -13.554 15.961 hybrid contribution 0.509 -0.825 0.223 0.995 sum -3.417 6.634 -13.331 15.278 Atomic orbital electron populations 1.21756 0.90257 1.02747 1.04651 1.21143 0.99822 1.01818 0.89527 0.85074 1.22257 0.98760 0.94499 0.83945 1.85701 1.75953 1.50068 1.11993 1.18681 1.05187 0.95741 0.85008 1.20797 1.03943 0.97182 0.97911 1.20879 1.03757 1.01377 0.91762 1.17956 0.90727 0.92256 0.93689 1.19748 1.43006 0.93677 0.96476 0.90244 1.26778 0.94136 0.96761 1.00469 1.69916 1.35501 1.04662 1.36006 0.85187 0.78685 0.78280 0.77505 1.18615 1.19385 1.18090 1.20839 1.04888 1.00062 0.96461 1.19911 1.03170 1.00424 0.89768 1.20497 0.78658 0.83336 0.86375 1.43548 1.54971 1.33961 1.06558 1.90774 1.40332 1.28745 1.87722 0.91062 0.93271 0.88179 0.94080 0.93829 0.87842 0.88029 0.90336 0.86696 0.85321 0.74681 0.75721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.99 71.98 0.65 -1.86 16 2 C -0.10 -2.34 2.96 -11.54 -0.03 -2.38 16 3 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.08 2.84 3.46 71.98 0.25 3.09 16 5 O -0.32 -12.71 9.66 -89.92 -0.87 -13.58 16 6 C 0.00 -0.11 6.71 22.79 0.15 0.04 16 7 C -0.18 -9.12 8.96 22.11 0.20 -8.92 16 8 C -0.16 -8.86 8.64 22.48 0.19 -8.67 16 9 C 0.06 3.13 5.57 -21.28 -0.12 3.01 16 10 C -0.50 -27.65 9.04 23.40 0.21 -27.44 16 11 H 0.08 4.18 7.91 -2.91 -0.02 4.16 16 12 C 0.03 1.68 5.13 85.23 0.44 2.11 16 13 N -0.83 -45.59 10.97 21.82 0.24 -45.35 16 14 Si 0.98 39.36 29.60 68.60 2.03 41.39 16 15 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 16 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 17 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 18 C -0.20 -10.16 9.74 22.49 0.22 -9.94 16 19 C -0.11 -5.24 9.92 22.11 0.22 -5.02 16 20 C 0.53 12.34 7.43 87.66 0.65 12.99 16 21 N -0.83 -9.85 8.77 -173.53 -1.52 -11.37 16 22 O -0.60 -20.66 16.76 -3.05 -0.05 -20.71 16 23 H 0.07 1.48 7.82 -2.39 -0.02 1.46 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.10 0.96 7.56 -2.39 -0.02 0.94 16 26 H 0.04 1.57 7.63 -2.39 -0.02 1.55 16 27 H 0.04 1.65 7.47 -2.39 -0.02 1.63 16 28 H 0.10 4.98 6.27 -2.91 -0.02 4.96 16 29 H 0.10 5.96 6.18 -2.91 -0.02 5.94 16 30 H 0.29 14.18 8.30 -92.70 -0.77 13.41 16 31 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 32 H 0.13 5.01 8.06 -2.91 -0.02 4.98 16 33 H 0.42 1.85 8.25 -92.71 -0.76 1.09 16 34 H 0.41 4.09 8.93 -92.71 -0.83 3.26 16 Total: -1.00 -71.25 292.34 2.40 -68.86 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -0.46 Total: 23.73 kcal Atomic # 6 Polarization: -46.00 SS G_CDS: 3.03 Total: -42.97 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -1.28 Total: -56.72 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.92 Total: -34.29 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -71.25 2.40 -68.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037227511.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.724 kcal (2) G-P(sol) polarization free energy of solvation -71.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds