Wall clock time and date at job start Mon Mar 30 2020 03:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50701 * 109.46786 * 119.99870 * 2 1 3 5 5 H 1.08002 * 119.99375 * 120.00575 * 4 2 1 6 6 C 1.37872 * 120.00107 * 299.99767 * 4 2 1 7 7 N 1.31514 * 119.99977 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99780 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46608 * 90.00539 * 8 6 4 10 10 H 1.48502 * 109.47135 * 209.99830 * 8 6 4 11 11 H 1.48494 * 109.47150 * 330.00327 * 8 6 4 12 12 N 1.46900 * 109.46985 * 239.99928 * 2 1 3 13 13 C 1.46901 * 110.99663 * 85.00299 * 12 2 1 14 14 C 1.50706 * 109.46848 * 180.02562 * 13 12 2 15 15 C 1.38281 * 119.98170 * 259.99531 * 14 13 12 16 16 C 1.38210 * 120.14359 * 179.97438 * 15 14 13 17 17 C 1.38283 * 120.14288 * 0.02562 * 16 15 14 18 18 C 1.38505 * 120.02841 * 0.02562 * 17 16 15 19 19 C 1.38500 * 119.98671 * 79.72136 * 14 13 12 20 20 O 1.36494 * 131.53998 * 0.67591 * 19 14 13 21 21 C 1.43989 * 105.56233 * 162.24607 * 20 19 14 22 22 O 1.36496 * 131.54146 * 180.02562 * 18 17 16 23 23 H 1.09004 * 109.46742 * 60.00129 * 1 2 3 24 24 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46940 * 299.99952 * 1 2 3 26 26 H 0.97008 * 119.99922 * 180.02562 * 7 6 4 27 27 H 1.00898 * 110.99856 * 321.04870 * 12 2 1 28 28 H 1.08995 * 109.47466 * 59.99855 * 13 12 2 29 29 H 1.08999 * 109.47282 * 299.99304 * 13 12 2 30 30 H 1.07997 * 119.93079 * 359.96313 * 15 14 13 31 31 H 1.08001 * 119.92651 * 180.02562 * 16 15 14 32 32 H 1.07995 * 119.98694 * 179.97438 * 17 16 15 33 33 H 1.08996 * 110.56901 * 268.32101 * 21 20 19 34 34 H 1.08996 * 110.69896 * 145.50742 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3225 -1.1196 4.0080 9 1 3.6304 -0.5439 4.4118 10 1 1.3445 -0.9489 5.1123 11 1 2.4880 -2.5653 3.7122 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3468 14 6 2.5874 -0.5218 -3.5560 15 6 3.9117 -0.4049 -3.9363 16 6 4.3784 -1.0865 -5.0444 17 6 3.5228 -1.8880 -5.7778 18 6 2.1949 -2.0090 -5.4034 19 6 1.7261 -1.3272 -4.2825 20 8 0.3986 -1.6043 -4.1272 21 6 -0.0339 -2.1431 -5.3904 22 8 1.1632 -2.7207 -5.9439 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7088 1.1614 3.4844 27 1 1.4496 -1.4979 -1.4100 28 1 2.7589 1.0462 -2.1182 29 1 1.0872 0.6163 -2.5525 30 1 4.5828 0.2205 -3.3664 31 1 5.4135 -0.9930 -5.3380 32 1 3.8901 -2.4192 -6.6434 33 1 -0.4104 -1.3500 -6.0363 34 1 -0.7954 -2.9087 -5.2422 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040667483.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:00 Heat of formation + Delta-G solvation = -55.562305 kcal Electronic energy + Delta-G solvation = -17915.775574 eV Core-core repulsion = 15006.823108 eV Total energy + Delta-G solvation = -2908.952466 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.10684 -39.20439 -37.72385 -37.14484 -34.69258 -32.48942 -30.86549 -29.67727 -27.27644 -26.73248 -25.90702 -23.86343 -22.53939 -22.11928 -19.00268 -18.71535 -18.40919 -17.91013 -17.21967 -16.73056 -16.16913 -15.51202 -15.43268 -15.10756 -15.08839 -14.39872 -14.18056 -13.95465 -13.82941 -13.51824 -13.18101 -13.01915 -12.87008 -12.64398 -12.48597 -12.18582 -12.09203 -11.83106 -11.69385 -11.06438 -10.49146 -9.72633 -9.05888 -8.98856 -8.09924 -6.21518 0.22043 0.23856 1.43802 1.44077 1.55464 1.85409 2.44010 2.56888 2.62814 3.18122 3.44367 3.77601 3.83438 3.91882 4.06186 4.23265 4.26586 4.36722 4.52370 4.60423 4.64406 4.75558 4.85311 5.05904 5.07832 5.17175 5.35843 5.40445 5.53414 5.58510 5.66449 5.78111 6.17713 6.24098 6.59688 6.71607 6.91133 7.48149 8.95797 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032353 B = 0.005183 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.244191 B = 5401.153952 C = 5768.002849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.008 0.992 4 C -0.516 4.516 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.677 5.677 13 C 0.104 3.896 14 C -0.072 4.072 15 C -0.099 4.099 16 C -0.098 4.098 17 C -0.103 4.103 18 C 0.011 3.989 19 C 0.014 3.986 20 O -0.332 6.332 21 C 0.205 3.795 22 O -0.322 6.322 23 H 0.020 0.980 24 H 0.027 0.973 25 H 0.065 0.935 26 H 0.262 0.738 27 H 0.326 0.674 28 H 0.079 0.921 29 H 0.019 0.981 30 H 0.150 0.850 31 H 0.176 0.824 32 H 0.160 0.840 33 H 0.102 0.898 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 -3.666 -18.129 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.107 3.893 3 H 0.026 0.974 4 C -0.555 4.555 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.789 3.211 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.306 5.306 13 C -0.025 4.025 14 C -0.073 4.073 15 C -0.118 4.118 16 C -0.116 4.116 17 C -0.122 4.122 18 C -0.033 4.033 19 C -0.031 4.031 20 O -0.249 6.249 21 C 0.094 3.906 22 O -0.238 6.238 23 H 0.039 0.961 24 H 0.046 0.954 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.142 0.858 28 H 0.097 0.903 29 H 0.038 0.962 30 H 0.168 0.832 31 H 0.194 0.806 32 H 0.178 0.822 33 H 0.119 0.881 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.397 -3.618 -17.792 18.471 hybrid contribution -1.402 -0.123 0.816 1.627 sum 1.995 -3.740 -16.975 17.496 Atomic orbital electron populations 1.22222 1.00226 0.98949 0.99913 1.18984 0.89917 0.92979 0.87424 0.97434 1.21415 1.30547 1.12508 0.90991 0.92847 1.25729 0.95377 0.95892 1.01893 1.70010 1.37916 1.24287 1.24067 0.85477 0.78053 0.78918 0.78665 1.20025 1.20806 1.19582 1.60826 1.57601 1.09125 1.03075 1.20759 0.98504 0.94943 0.88308 1.19118 0.93834 0.97607 0.96734 1.21166 0.92579 1.00478 0.97564 1.21324 1.01077 0.95396 0.93788 1.20482 0.88220 1.01152 1.02340 1.20102 0.92507 0.95990 0.94691 1.19868 0.84801 1.00712 0.97701 1.87363 1.21466 1.79815 1.36262 1.26032 0.87850 0.97401 0.79317 1.87284 1.14867 1.54805 1.66888 0.96076 0.95421 0.91632 0.92916 0.85788 0.90304 0.96247 0.83221 0.80638 0.82198 0.88069 0.82713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.84 8.94 71.99 0.64 -7.20 16 2 C 0.22 11.40 2.57 44.17 0.11 11.51 16 3 H 0.01 0.44 7.80 -2.39 -0.02 0.43 16 4 C -0.52 -29.62 8.84 25.60 0.23 -29.40 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.52 5.30 84.65 0.45 0.97 16 7 N -0.92 -54.03 11.32 21.45 0.24 -53.79 16 8 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 N -0.68 -30.91 6.22 -499.44 -3.11 -34.02 16 13 C 0.10 4.00 5.61 85.56 0.48 4.48 16 14 C -0.07 -2.34 5.40 -19.79 -0.11 -2.45 16 15 C -0.10 -2.56 9.66 22.27 0.22 -2.34 16 16 C -0.10 -1.93 10.04 22.27 0.22 -1.71 16 17 C -0.10 -2.22 10.06 22.34 0.22 -2.00 16 18 C 0.01 0.31 7.15 22.59 0.16 0.47 16 19 C 0.01 0.45 6.84 22.59 0.15 0.60 16 20 O -0.33 -10.71 11.39 -75.98 -0.87 -11.57 16 21 C 0.20 4.54 8.89 113.37 1.01 5.55 16 22 O -0.32 -8.43 11.40 -76.00 -0.87 -9.30 16 23 H 0.02 0.96 7.45 -2.39 -0.02 0.94 16 24 H 0.03 1.36 8.13 -2.39 -0.02 1.34 16 25 H 0.06 3.66 6.07 -2.39 -0.01 3.64 16 26 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 27 H 0.33 14.99 8.45 -89.70 -0.76 14.23 16 28 H 0.08 2.94 7.92 -2.39 -0.02 2.92 16 29 H 0.02 0.78 7.43 -2.39 -0.02 0.76 16 30 H 0.15 3.42 8.03 -2.91 -0.02 3.39 16 31 H 0.18 2.03 8.06 -2.91 -0.02 2.00 16 32 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.16 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -67.39 290.32 1.58 -65.81 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.35 Total: 17.61 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 3.79 Total: -21.52 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -2.86 Total: -87.81 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -1.73 Total: -20.87 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -67.39 1.58 -65.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040667483.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.251 kcal (2) G-P(sol) polarization free energy of solvation -67.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds