Wall clock time and date at job start Mon Mar 30 2020 04:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46493 * 120.00023 * 2 1 4 4 C 1.39668 * 119.99592 * 179.72289 * 2 1 3 5 5 C 1.38976 * 120.04226 * 173.96960 * 4 2 1 6 6 C 1.38121 * 120.03406 * 179.76500 * 5 4 2 7 7 C 1.38209 * 120.12612 * 0.51440 * 6 5 4 8 8 C 1.38774 * 120.09517 * 359.74305 * 7 6 5 9 9 O 1.35903 * 120.01914 * 179.97438 * 8 7 6 10 10 C 1.42905 * 116.99784 * 0.02562 * 9 8 7 11 11 C 1.50702 * 109.46803 * 180.02562 * 10 9 8 12 12 O 1.21432 * 119.99952 * 0.02562 * 11 10 9 13 13 C 1.41023 * 119.99786 * 179.97438 * 11 10 9 14 14 H 1.08004 * 120.00321 * 0.02562 * 13 11 10 15 15 C 1.40461 * 119.99811 * 179.97438 * 13 11 10 16 16 N 1.30523 * 120.00129 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99813 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47201 * 90.00124 * 17 15 13 19 19 H 1.48504 * 109.47157 * 209.99777 * 17 15 13 20 20 H 1.48498 * 109.47229 * 330.00155 * 17 15 13 21 21 C 1.38610 * 119.96198 * 359.97438 * 8 7 6 22 22 H 1.09004 * 109.46910 * 270.27691 * 1 2 3 23 23 H 1.08993 * 109.47220 * 30.27451 * 1 2 3 24 24 H 1.09004 * 109.47238 * 150.27916 * 1 2 3 25 25 H 1.09000 * 109.46986 * 184.75312 * 3 2 1 26 26 H 1.09001 * 109.46814 * 304.74518 * 3 2 1 27 27 H 1.08996 * 109.47240 * 64.75151 * 3 2 1 28 28 H 1.07999 * 119.98585 * 0.02562 * 5 4 2 29 29 H 1.08004 * 119.93572 * 180.23198 * 6 5 4 30 30 H 1.08006 * 119.95525 * 179.75955 * 7 6 5 31 31 H 1.09001 * 109.47335 * 300.00345 * 10 9 8 32 32 H 1.09002 * 109.47119 * 60.00400 * 10 9 8 33 33 H 0.97004 * 119.99598 * 179.97438 * 16 15 13 34 34 H 1.08008 * 120.06237 * 180.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1633 -1.2096 0.0059 5 6 3.5473 -1.2147 -0.1205 6 6 4.2381 -2.4107 -0.1098 7 6 3.5546 -3.6054 0.0158 8 6 2.1722 -3.6068 0.1369 9 8 1.5017 -4.7825 0.2598 10 6 2.2837 -5.9787 0.2572 11 6 1.3756 -7.1727 0.4011 12 8 0.1753 -7.0147 0.4962 13 6 1.9197 -8.4736 0.4243 14 1 2.9871 -8.6141 0.3393 15 6 1.0733 -9.5865 0.5590 16 7 -0.2166 -9.4166 0.6633 17 14 1.7941 -11.3095 0.5904 18 1 2.1065 -11.6900 1.9914 19 1 0.8106 -12.2679 0.0249 20 1 3.0380 -11.3406 -0.2201 21 6 1.4756 -2.4085 0.1325 22 1 -0.3633 0.0050 1.0277 23 1 -0.3633 0.8874 -0.5181 24 1 -0.3634 -0.8925 -0.5095 25 1 3.2661 1.0712 -0.0852 26 1 1.8719 1.8761 -0.8445 27 1 1.9996 1.8025 0.9294 28 1 4.0833 -0.2827 -0.2229 29 1 5.3139 -2.4125 -0.2044 30 1 4.0973 -4.5392 0.0199 31 1 2.8331 -6.0515 -0.6814 32 1 2.9874 -5.9545 1.0892 33 1 -0.8010 -10.1852 0.7559 34 1 0.3997 -2.4077 0.2272 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041231125.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:10 Heat of formation + Delta-G solvation = -39.578774 kcal Electronic energy + Delta-G solvation = -17323.044528 eV Core-core repulsion = 14414.785160 eV Total energy + Delta-G solvation = -2908.259368 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.76474 -38.04473 -36.39653 -35.16560 -32.66304 -30.65521 -29.40175 -28.58018 -27.71798 -25.76830 -24.53233 -21.86330 -20.85581 -19.36344 -17.90285 -16.45105 -15.85535 -15.71359 -15.32934 -15.25101 -14.97967 -14.90829 -14.18771 -13.57149 -13.24328 -12.88116 -12.65243 -12.53568 -12.35544 -12.01857 -11.90251 -11.59334 -11.40886 -11.09402 -11.05547 -10.55636 -10.40286 -10.18416 -10.16043 -9.53595 -8.96802 -7.84525 -7.44329 -7.15065 -6.30862 -4.98227 1.79870 1.93496 3.03362 3.10136 3.12476 3.15694 3.90969 4.13494 4.16124 4.19929 4.92319 5.02914 5.21497 5.24626 5.33613 5.35631 5.51687 5.60648 5.63916 5.68354 5.76360 5.88852 6.05325 6.10552 6.40467 6.40852 6.48276 6.74499 6.81348 6.95745 7.19753 7.32698 7.59085 7.98037 8.11515 8.76200 8.77112 10.28570 10.49764 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.049360 B = 0.004145 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.121977 B = 6754.068020 C = 7293.828274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.640 5.640 3 C 0.093 3.907 4 C 0.244 3.756 5 C -0.248 4.248 6 C -0.037 4.037 7 C -0.268 4.268 8 C 0.184 3.816 9 O -0.288 6.288 10 C 0.018 3.982 11 C 0.365 3.635 12 O -0.523 6.523 13 C -0.533 4.533 14 H 0.073 0.927 15 C 0.082 3.918 16 N -0.738 5.738 17 Si 0.912 3.088 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.237 4.237 22 H 0.047 0.953 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.275 0.725 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.503 15.086 -1.507 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.353 5.353 3 C -0.050 4.050 4 C 0.143 3.857 5 C -0.270 4.270 6 C -0.055 4.055 7 C -0.289 4.289 8 C 0.136 3.864 9 O -0.200 6.200 10 C -0.058 4.058 11 C 0.257 3.743 12 O -0.409 6.409 13 C -0.564 4.564 14 H 0.091 0.909 15 C -0.141 4.141 16 N -0.366 5.366 17 Si 0.735 3.265 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.185 1.185 21 C -0.260 4.260 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.412 15.260 -1.429 16.254 hybrid contribution 0.805 -0.811 0.002 1.142 sum 6.217 14.450 -1.427 15.795 Atomic orbital electron populations 1.21609 0.79540 1.02606 1.01206 1.46229 1.04979 1.02992 1.81098 1.21644 0.97834 0.84970 1.00572 1.17417 0.90882 0.84922 0.92439 1.20459 0.92127 0.98284 1.16165 1.20589 0.98864 0.91407 0.94688 1.21126 0.93459 0.99263 1.15004 1.18995 0.90445 0.86737 0.90228 1.86303 1.35953 1.12037 1.85686 1.23757 0.97087 0.84431 1.00481 1.19429 0.88668 0.86622 0.79554 1.90445 1.16312 1.86794 1.47380 1.20550 0.95202 0.91404 1.49287 0.90909 1.25984 0.94363 1.01231 0.92560 1.69959 1.03951 1.32164 1.30548 0.86295 0.79785 0.81039 0.79335 1.19358 1.20124 1.18511 1.19781 1.00148 0.88852 1.17210 0.93477 0.91871 0.90953 0.90333 0.92959 0.93328 0.86372 0.86334 0.85686 0.91801 0.91802 0.91385 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.01 10.09 59.85 0.60 1.61 16 2 N -0.64 -8.01 3.41 -187.58 -0.64 -8.65 16 3 C 0.09 0.84 10.63 59.84 0.64 1.47 16 4 C 0.24 3.75 6.53 -83.81 -0.55 3.20 16 5 C -0.25 -3.48 9.31 -39.35 -0.37 -3.85 16 6 C -0.04 -0.53 10.03 -39.63 -0.40 -0.93 16 7 C -0.27 -4.64 9.04 -39.39 -0.36 -5.00 16 8 C 0.18 3.69 6.68 -39.25 -0.26 3.43 16 9 O -0.29 -6.93 9.67 -39.33 -0.38 -7.31 16 10 C 0.02 0.43 5.09 36.01 0.18 0.61 16 11 C 0.37 10.52 6.98 -33.25 -0.23 10.28 16 12 O -0.52 -17.25 15.02 -14.47 -0.22 -17.47 16 13 C -0.53 -14.73 9.22 -37.69 -0.35 -15.08 16 14 H 0.07 1.81 7.85 -52.48 -0.41 1.40 16 15 C 0.08 2.22 5.50 -17.27 -0.10 2.13 16 16 N -0.74 -21.47 11.72 55.57 0.65 -20.82 16 17 Si 0.91 19.25 29.56 -169.99 -5.03 14.23 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 20 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 21 C -0.24 -4.27 9.10 -39.24 -0.36 -4.63 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 24 H 0.07 0.84 6.46 -51.93 -0.34 0.51 16 25 H 0.08 0.66 5.31 -51.93 -0.28 0.39 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.12 1.33 5.74 -52.49 -0.30 1.03 16 29 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 30 H 0.13 2.06 6.29 -52.48 -0.33 1.73 16 31 H 0.06 1.35 7.66 -51.93 -0.40 0.96 16 32 H 0.06 1.35 7.66 -51.93 -0.40 0.95 16 33 H 0.28 7.14 8.29 -40.82 -0.34 6.80 16 34 H 0.13 2.27 6.31 -52.48 -0.33 1.94 16 LS Contribution 291.04 15.07 4.39 4.39 Total: -1.00 -34.17 291.04 -6.79 -40.96 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -4.03 Total: 1.41 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -1.54 Total: -6.74 kcal Atomic # 7 Polarization: -29.48 SS G_CDS: 0.01 Total: -29.47 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.60 Total: -24.78 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -34.17 -6.79 -40.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041231125.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.384 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds