Wall clock time and date at job start Mon Mar 30 2020 04:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46493 * 120.00023 * 2 1 4 4 C 1.39668 * 119.99592 * 179.72289 * 2 1 3 5 5 C 1.38976 * 120.04226 * 173.96960 * 4 2 1 6 6 C 1.38121 * 120.03406 * 179.76500 * 5 4 2 7 7 C 1.38209 * 120.12612 * 0.51440 * 6 5 4 8 8 C 1.38774 * 120.09517 * 359.74305 * 7 6 5 9 9 O 1.35903 * 120.01914 * 179.97438 * 8 7 6 10 10 C 1.42905 * 116.99784 * 0.02562 * 9 8 7 11 11 C 1.50702 * 109.46803 * 180.02562 * 10 9 8 12 12 O 1.21432 * 119.99952 * 0.02562 * 11 10 9 13 13 C 1.41023 * 119.99786 * 179.97438 * 11 10 9 14 14 H 1.08004 * 120.00321 * 0.02562 * 13 11 10 15 15 C 1.40461 * 119.99811 * 179.97438 * 13 11 10 16 16 N 1.30523 * 120.00129 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99813 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47201 * 90.00124 * 17 15 13 19 19 H 1.48504 * 109.47157 * 209.99777 * 17 15 13 20 20 H 1.48498 * 109.47229 * 330.00155 * 17 15 13 21 21 C 1.38610 * 119.96198 * 359.97438 * 8 7 6 22 22 H 1.09004 * 109.46910 * 270.27691 * 1 2 3 23 23 H 1.08993 * 109.47220 * 30.27451 * 1 2 3 24 24 H 1.09004 * 109.47238 * 150.27916 * 1 2 3 25 25 H 1.09000 * 109.46986 * 184.75312 * 3 2 1 26 26 H 1.09001 * 109.46814 * 304.74518 * 3 2 1 27 27 H 1.08996 * 109.47240 * 64.75151 * 3 2 1 28 28 H 1.07999 * 119.98585 * 0.02562 * 5 4 2 29 29 H 1.08004 * 119.93572 * 180.23198 * 6 5 4 30 30 H 1.08006 * 119.95525 * 179.75955 * 7 6 5 31 31 H 1.09001 * 109.47335 * 300.00345 * 10 9 8 32 32 H 1.09002 * 109.47119 * 60.00400 * 10 9 8 33 33 H 0.97004 * 119.99598 * 179.97438 * 16 15 13 34 34 H 1.08008 * 120.06237 * 180.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1633 -1.2096 0.0059 5 6 3.5473 -1.2147 -0.1205 6 6 4.2381 -2.4107 -0.1098 7 6 3.5546 -3.6054 0.0158 8 6 2.1722 -3.6068 0.1369 9 8 1.5017 -4.7825 0.2598 10 6 2.2837 -5.9787 0.2572 11 6 1.3756 -7.1727 0.4011 12 8 0.1753 -7.0147 0.4962 13 6 1.9197 -8.4736 0.4243 14 1 2.9871 -8.6141 0.3393 15 6 1.0733 -9.5865 0.5590 16 7 -0.2166 -9.4166 0.6633 17 14 1.7941 -11.3095 0.5904 18 1 2.1065 -11.6900 1.9914 19 1 0.8106 -12.2679 0.0249 20 1 3.0380 -11.3406 -0.2201 21 6 1.4756 -2.4085 0.1325 22 1 -0.3633 0.0050 1.0277 23 1 -0.3633 0.8874 -0.5181 24 1 -0.3634 -0.8925 -0.5095 25 1 3.2661 1.0712 -0.0852 26 1 1.8719 1.8761 -0.8445 27 1 1.9996 1.8025 0.9294 28 1 4.0833 -0.2827 -0.2229 29 1 5.3139 -2.4125 -0.2044 30 1 4.0973 -4.5392 0.0199 31 1 2.8331 -6.0515 -0.6814 32 1 2.9874 -5.9545 1.0892 33 1 -0.8010 -10.1852 0.7559 34 1 0.3997 -2.4077 0.2272 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041231125.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:09 Heat of formation + Delta-G solvation = -61.599445 kcal Electronic energy + Delta-G solvation = -17323.999416 eV Core-core repulsion = 14414.785160 eV Total energy + Delta-G solvation = -2909.214256 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.14086 -39.56160 -38.33003 -36.41106 -34.79482 -31.95115 -30.62043 -30.35476 -28.84480 -27.60354 -25.63629 -23.10450 -22.43637 -21.04243 -19.27178 -18.39115 -17.46378 -17.11847 -16.87766 -16.76584 -16.27893 -15.92068 -15.64029 -15.07308 -14.67286 -14.53893 -14.30317 -13.60003 -13.38014 -13.33048 -13.23074 -13.13529 -12.91140 -12.71826 -12.51019 -12.16595 -12.03217 -11.87139 -11.69636 -11.00886 -10.67037 -9.62784 -9.24400 -8.37615 -8.23930 -7.19513 0.55198 0.65500 1.36179 1.39020 1.57529 2.06775 2.11237 2.21282 2.58135 2.92883 3.26739 3.94194 4.06226 4.14003 4.24144 4.30704 4.46782 4.47928 4.51324 4.54667 4.61766 4.64881 4.77043 4.86779 4.93334 4.96832 5.14539 5.27527 5.51102 5.62885 5.71845 5.88232 6.31450 6.45899 6.56437 6.63187 6.77032 8.17862 8.44259 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.049360 B = 0.004145 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.121977 B = 6754.068020 C = 7293.828274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.642 5.642 3 C 0.086 3.914 4 C 0.244 3.756 5 C -0.239 4.239 6 C -0.029 4.029 7 C -0.281 4.281 8 C 0.146 3.854 9 O -0.330 6.330 10 C 0.034 3.966 11 C 0.334 3.666 12 O -0.584 6.584 13 C -0.555 4.555 14 H 0.099 0.901 15 C 0.022 3.978 16 N -0.790 5.790 17 Si 1.006 2.994 18 H -0.257 1.257 19 H -0.269 1.269 20 H -0.243 1.243 21 C -0.261 4.261 22 H 0.048 0.952 23 H 0.093 0.907 24 H 0.053 0.947 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.156 0.844 29 H 0.158 0.842 30 H 0.129 0.871 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.284 0.716 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.402 16.092 -1.842 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.354 5.354 3 C -0.056 4.056 4 C 0.141 3.859 5 C -0.260 4.260 6 C -0.047 4.047 7 C -0.301 4.301 8 C 0.099 3.901 9 O -0.243 6.243 10 C -0.041 4.041 11 C 0.231 3.769 12 O -0.477 6.477 13 C -0.585 4.585 14 H 0.117 0.883 15 C -0.197 4.197 16 N -0.419 5.419 17 Si 0.823 3.177 18 H -0.181 1.181 19 H -0.193 1.193 20 H -0.166 1.166 21 C -0.284 4.284 22 H 0.066 0.934 23 H 0.111 0.889 24 H 0.072 0.928 25 H 0.106 0.894 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.173 0.827 29 H 0.176 0.824 30 H 0.147 0.853 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.337 16.334 -1.768 18.424 hybrid contribution -0.115 -0.910 0.099 0.923 sum 8.221 15.424 -1.669 17.558 Atomic orbital electron populations 1.21713 0.79049 1.03175 1.01510 1.46562 1.05704 1.03238 1.79862 1.21912 0.98053 0.83437 1.02163 1.17593 0.91795 0.85026 0.91530 1.20918 0.91485 0.99750 1.13896 1.21027 1.00721 0.90281 0.92674 1.21262 0.92231 1.00875 1.15776 1.19342 0.91968 0.85636 0.93141 1.86209 1.37557 1.13326 1.87197 1.23343 0.95670 0.83079 1.02058 1.20293 0.88649 0.89204 0.78737 1.90393 1.18768 1.88124 1.50365 1.21164 0.96780 0.91794 1.48779 0.88305 1.27380 0.94454 1.06873 0.90959 1.70116 1.06241 1.34452 1.31075 0.84908 0.79282 0.73436 0.80069 1.18122 1.19329 1.16628 1.19868 0.99823 0.89784 1.18938 0.93372 0.88851 0.92793 0.89370 0.90988 0.91992 0.82677 0.82443 0.85313 0.89961 0.89960 0.90548 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.84 10.09 127.77 1.29 3.13 16 2 N -0.64 -14.81 3.41 -747.37 -2.55 -17.36 16 3 C 0.09 1.23 10.63 127.77 1.36 2.59 16 4 C 0.24 7.20 6.53 38.20 0.25 7.45 16 5 C -0.24 -5.93 9.31 22.42 0.21 -5.72 16 6 C -0.03 -0.75 10.03 22.24 0.22 -0.52 16 7 C -0.28 -9.57 9.04 22.39 0.20 -9.36 16 8 C 0.15 6.07 6.68 22.49 0.15 6.22 16 9 O -0.33 -16.86 9.67 -73.44 -0.71 -17.57 16 10 C 0.03 1.66 5.09 71.24 0.36 2.02 16 11 C 0.33 20.16 6.98 26.37 0.18 20.34 16 12 O -0.58 -41.13 15.02 15.52 0.23 -40.90 16 13 C -0.55 -31.19 9.22 23.49 0.22 -30.98 16 14 H 0.10 4.85 7.85 -2.91 -0.02 4.83 16 15 C 0.02 1.22 5.50 85.43 0.47 1.69 16 16 N -0.79 -47.62 11.72 21.91 0.26 -47.36 16 17 Si 1.01 39.07 29.56 68.60 2.03 41.09 16 18 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 19 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 20 H -0.24 -8.69 7.11 99.48 0.71 -7.99 16 21 C -0.26 -9.79 9.10 22.49 0.20 -9.58 16 22 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.09 1.36 8.07 -2.39 -0.02 1.34 16 24 H 0.05 1.32 6.46 -2.38 -0.02 1.30 16 25 H 0.09 1.08 5.31 -2.39 -0.01 1.07 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.16 2.69 5.74 -2.91 -0.02 2.67 16 29 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 30 H 0.13 4.15 6.29 -2.91 -0.02 4.13 16 31 H 0.08 3.57 7.66 -2.39 -0.02 3.55 16 32 H 0.08 3.57 7.66 -2.39 -0.02 3.55 16 33 H 0.28 15.20 8.29 -92.71 -0.77 14.43 16 34 H 0.11 4.39 6.31 -2.91 -0.02 4.37 16 Total: -1.00 -79.79 291.04 5.49 -74.30 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 1.11 Total: 20.53 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 5.12 Total: -12.73 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -2.29 Total: -64.72 kcal Atomic # 8 Polarization: -57.99 SS G_CDS: -0.48 Total: -58.47 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.09 kcal Total: -79.79 5.49 -74.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041231125.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.699 kcal (2) G-P(sol) polarization free energy of solvation -79.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds