Wall clock time and date at job start Mon Mar 30 2020 04:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.47607 * 260.00607 * 9 8 7 11 11 C 1.34770 * 119.99838 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00482 * 0.02562 * 11 10 9 13 13 C 1.50709 * 119.99912 * 180.02562 * 11 10 9 14 14 C 1.50694 * 109.47306 * 180.02562 * 13 11 10 15 15 H 1.08000 * 119.99927 * 359.97438 * 14 13 11 16 16 C 1.37874 * 119.99994 * 180.02562 * 14 13 11 17 17 N 1.31518 * 120.00069 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00232 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47251 * 89.99523 * 18 16 14 20 20 H 1.48494 * 109.47150 * 210.00144 * 18 16 14 21 21 H 1.48504 * 109.46841 * 329.99889 * 18 16 14 22 22 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 23 23 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 24 24 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 25 25 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 26 26 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 27 27 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 28 28 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 29 29 H 1.09001 * 109.47053 * 20.00832 * 9 8 7 30 30 H 1.09002 * 109.47103 * 140.00310 * 9 8 7 31 31 H 0.97000 * 119.99685 * 0.02562 * 10 9 8 32 32 H 1.08998 * 109.46577 * 300.00173 * 13 11 10 33 33 H 1.08996 * 109.46721 * 59.99979 * 13 11 10 34 34 H 0.96997 * 119.99955 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 7 4.3189 -0.5187 -1.3602 11 6 5.0067 -1.6521 -1.6022 12 8 5.5714 -2.2245 -0.6943 13 6 5.0743 -2.2083 -3.0013 14 6 5.8968 -3.4710 -3.0007 15 1 6.3280 -3.8342 -2.0795 16 6 6.0999 -4.1619 -4.1764 17 7 5.5761 -3.7188 -5.2985 18 14 7.1189 -5.7276 -4.1757 19 1 6.2332 -6.8946 -3.9330 20 1 7.7911 -5.8813 -5.4908 21 1 8.1425 -5.6514 -3.1025 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2128 2.3203 -0.0010 26 1 1.3339 4.5114 0.0026 27 1 3.7920 4.6381 -0.0024 28 1 5.1344 2.5754 -0.0023 29 1 5.2613 0.2452 0.3508 30 1 3.7927 -0.7115 0.6610 31 1 3.8676 -0.0607 -2.0864 32 1 4.0669 -2.4315 -3.3525 33 1 5.5352 -1.4743 -3.6622 34 1 5.7187 -4.2052 -6.1255 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057499131.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:06 Heat of formation + Delta-G solvation = -57.569653 kcal Electronic energy + Delta-G solvation = -17434.586893 eV Core-core repulsion = 14525.547382 eV Total energy + Delta-G solvation = -2909.039511 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.38616 -38.43009 -37.47321 -34.35709 -32.84550 -31.32730 -30.22297 -28.86698 -27.46702 -25.80603 -23.24069 -22.25016 -21.39822 -19.53526 -18.14138 -16.44609 -16.30075 -16.20553 -15.84529 -15.27207 -14.89982 -14.54963 -14.39609 -14.22625 -13.70988 -13.00622 -12.81175 -12.43784 -12.37346 -12.09702 -11.97221 -11.55357 -11.24621 -11.04313 -10.89234 -10.70605 -10.53024 -9.89145 -9.19918 -9.16914 -8.58880 -8.39682 -8.29132 -8.19150 -5.99456 -3.98402 1.13171 1.30808 3.19074 3.39262 3.44037 3.51006 3.55511 3.85198 4.26547 4.55956 4.59904 4.68281 4.90295 4.94047 5.01731 5.18417 5.23443 5.37614 5.38715 5.50365 5.71163 5.78391 6.06022 6.17061 6.32644 6.43459 6.49297 6.65897 7.16183 7.27271 7.30198 7.42183 8.02706 8.16553 8.55686 9.12775 9.35745 9.66441 11.13088 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.034572 B = 0.004458 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.710905 B = 6279.011193 C = 6544.104393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.305 6.305 3 C 0.143 3.857 4 C -0.213 4.213 5 C -0.079 4.079 6 C -0.161 4.161 7 C -0.064 4.064 8 C -0.132 4.132 9 C 0.170 3.830 10 N -0.740 5.740 11 C 0.515 3.485 12 O -0.549 6.549 13 C 0.005 3.995 14 C -0.505 4.505 15 H 0.075 0.925 16 C 0.053 3.947 17 N -0.902 5.902 18 Si 0.901 3.099 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.272 1.272 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.101 0.899 25 H 0.127 0.873 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.132 0.868 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.395 0.605 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.943 15.568 9.484 21.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.217 6.217 3 C 0.097 3.903 4 C -0.232 4.232 5 C -0.097 4.097 6 C -0.180 4.180 7 C -0.083 4.083 8 C -0.133 4.133 9 C 0.047 3.953 10 N -0.394 5.394 11 C 0.305 3.695 12 O -0.425 6.425 13 C -0.034 4.034 14 C -0.544 4.544 15 H 0.093 0.907 16 C -0.147 4.147 17 N -0.542 5.542 18 Si 0.729 3.271 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.197 1.197 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.119 0.881 25 H 0.145 0.855 26 H 0.141 0.859 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.228 0.772 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.443 14.872 9.971 20.728 hybrid contribution -0.136 -0.305 -0.483 0.587 sum -10.579 14.567 9.488 20.350 Atomic orbital electron populations 1.23077 0.78510 1.04189 1.01026 1.86210 1.21167 1.26345 1.88004 1.18935 0.91792 0.84457 0.95114 1.21225 0.99997 0.92350 1.09643 1.20940 0.94717 0.96861 0.97203 1.21044 0.93890 0.98372 1.04663 1.21002 1.00213 0.90856 0.96198 1.19422 0.90686 0.96008 1.07162 1.19848 0.98005 0.91101 0.86384 1.46309 1.56199 1.28012 1.08902 1.21979 0.75805 0.78202 0.93534 1.90525 1.45401 1.59171 1.47428 1.19228 0.99586 0.97484 0.87084 1.21188 1.31088 1.07032 0.95061 0.90689 1.25010 0.96174 0.98125 0.95377 1.69968 1.45507 1.39877 0.98875 0.86434 0.80381 0.83126 0.77170 1.20658 1.21326 1.19668 0.92860 0.92622 0.88077 0.85481 0.85929 0.85839 0.85062 0.91504 0.91136 0.77204 0.93544 0.93546 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.30 -4.12 9.73 -19.42 -0.19 -4.31 16 3 C 0.14 1.85 6.66 -39.22 -0.26 1.59 16 4 C -0.21 -2.23 9.04 -39.43 -0.36 -2.58 16 5 C -0.08 -0.74 10.04 -39.60 -0.40 -1.14 16 6 C -0.16 -1.58 10.04 -39.56 -0.40 -1.98 16 7 C -0.06 -0.74 9.67 -39.61 -0.38 -1.12 16 8 C -0.13 -1.78 5.26 -104.48 -0.55 -2.33 16 9 C 0.17 2.81 5.46 -5.20 -0.03 2.78 16 10 N -0.74 -13.91 5.55 -61.47 -0.34 -14.25 16 11 C 0.51 12.36 7.82 -10.98 -0.09 12.28 16 12 O -0.55 -14.97 15.46 5.56 0.09 -14.88 16 13 C 0.01 0.14 5.46 -29.03 -0.16 -0.01 16 14 C -0.51 -15.10 8.92 -34.44 -0.31 -15.41 16 15 H 0.07 2.34 6.75 -52.49 -0.35 1.98 16 16 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 18 Si 0.90 22.59 29.54 -169.99 -5.02 17.57 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 22 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 23 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 24 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.13 1.04 6.30 -52.49 -0.33 0.71 16 26 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 27 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 28 H 0.13 1.34 8.04 -52.49 -0.42 0.91 16 29 H 0.07 1.09 8.00 -51.93 -0.42 0.67 16 30 H 0.07 1.26 7.85 -51.93 -0.41 0.85 16 31 H 0.39 6.66 8.46 -40.82 -0.35 6.32 16 32 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 298.12 15.07 4.49 4.49 Total: -1.00 -34.42 298.12 -6.59 -41.01 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -4.32 Total: 1.90 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -2.03 Total: -5.23 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.40 Total: -40.55 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.10 Total: -19.20 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.42 -6.59 -41.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057499131.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.559 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds