Wall clock time and date at job start Mon Mar 30 2020 04:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.47607 * 260.00607 * 9 8 7 11 11 C 1.34770 * 119.99838 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00482 * 0.02562 * 11 10 9 13 13 C 1.50709 * 119.99912 * 180.02562 * 11 10 9 14 14 C 1.50694 * 109.47306 * 180.02562 * 13 11 10 15 15 H 1.08000 * 119.99927 * 359.97438 * 14 13 11 16 16 C 1.37874 * 119.99994 * 180.02562 * 14 13 11 17 17 N 1.31518 * 120.00069 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00232 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47251 * 89.99523 * 18 16 14 20 20 H 1.48494 * 109.47150 * 210.00144 * 18 16 14 21 21 H 1.48504 * 109.46841 * 329.99889 * 18 16 14 22 22 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 23 23 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 24 24 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 25 25 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 26 26 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 27 27 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 28 28 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 29 29 H 1.09001 * 109.47053 * 20.00832 * 9 8 7 30 30 H 1.09002 * 109.47103 * 140.00310 * 9 8 7 31 31 H 0.97000 * 119.99685 * 0.02562 * 10 9 8 32 32 H 1.08998 * 109.46577 * 300.00173 * 13 11 10 33 33 H 1.08996 * 109.46721 * 59.99979 * 13 11 10 34 34 H 0.96997 * 119.99955 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 7 4.3189 -0.5187 -1.3602 11 6 5.0067 -1.6521 -1.6022 12 8 5.5714 -2.2245 -0.6943 13 6 5.0743 -2.2083 -3.0013 14 6 5.8968 -3.4710 -3.0007 15 1 6.3280 -3.8342 -2.0795 16 6 6.0999 -4.1619 -4.1764 17 7 5.5761 -3.7188 -5.2985 18 14 7.1189 -5.7276 -4.1757 19 1 6.2332 -6.8946 -3.9330 20 1 7.7911 -5.8813 -5.4908 21 1 8.1425 -5.6514 -3.1025 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2128 2.3203 -0.0010 26 1 1.3339 4.5114 0.0026 27 1 3.7920 4.6381 -0.0024 28 1 5.1344 2.5754 -0.0023 29 1 5.2613 0.2452 0.3508 30 1 3.7927 -0.7115 0.6610 31 1 3.8676 -0.0607 -2.0864 32 1 4.0669 -2.4315 -3.3525 33 1 5.5352 -1.4743 -3.6622 34 1 5.7187 -4.2052 -6.1255 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057499131.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:06 Heat of formation + Delta-G solvation = -81.393815 kcal Electronic energy + Delta-G solvation = -17435.619986 eV Core-core repulsion = 14525.547382 eV Total energy + Delta-G solvation = -2910.072604 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.32438 -40.23187 -38.36969 -35.87468 -35.08591 -32.60212 -31.10583 -30.80299 -28.27382 -27.20861 -25.22123 -23.07210 -22.40947 -21.37592 -19.02726 -18.52643 -17.82720 -17.27784 -16.97315 -16.52658 -16.50089 -16.07643 -15.95865 -15.32443 -14.76129 -14.54134 -14.21804 -13.92255 -13.78667 -13.47833 -13.09695 -12.85711 -12.77093 -12.56810 -12.34638 -12.03723 -12.00403 -11.73081 -11.45078 -10.66095 -10.62573 -9.98724 -9.86180 -9.14554 -8.24688 -6.32326 0.26452 0.47801 1.40386 1.41840 1.54689 1.89788 2.35484 2.39888 2.51571 2.94654 3.10280 3.65405 3.85845 4.07224 4.26087 4.34227 4.36825 4.39077 4.46426 4.61032 4.67685 4.72771 4.84810 5.02663 5.07485 5.25564 5.36692 5.47881 5.54892 5.58770 5.74382 5.86803 6.05707 6.45665 6.70850 6.84243 7.33737 7.51215 8.87694 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.034572 B = 0.004458 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.710905 B = 6279.011193 C = 6544.104393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.127 3.873 4 C -0.214 4.214 5 C -0.071 4.071 6 C -0.160 4.160 7 C -0.070 4.070 8 C -0.156 4.156 9 C 0.176 3.824 10 N -0.718 5.718 11 C 0.518 3.482 12 O -0.587 6.587 13 C 0.010 3.990 14 C -0.537 4.537 15 H 0.055 0.945 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.967 3.033 19 H -0.271 1.271 20 H -0.272 1.272 21 H -0.274 1.274 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.105 0.895 25 H 0.150 0.850 26 H 0.157 0.843 27 H 0.151 0.849 28 H 0.138 0.862 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.406 0.594 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.816 17.165 9.486 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.081 3.919 4 C -0.232 4.232 5 C -0.089 4.089 6 C -0.178 4.178 7 C -0.088 4.088 8 C -0.158 4.158 9 C 0.053 3.947 10 N -0.370 5.370 11 C 0.307 3.693 12 O -0.467 6.467 13 C -0.030 4.030 14 C -0.575 4.575 15 H 0.073 0.927 16 C -0.189 4.189 17 N -0.565 5.565 18 Si 0.791 3.209 19 H -0.196 1.196 20 H -0.197 1.197 21 H -0.199 1.199 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.124 0.876 25 H 0.168 0.832 26 H 0.174 0.826 27 H 0.169 0.831 28 H 0.156 0.844 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.241 0.759 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.358 16.519 9.964 22.387 hybrid contribution 0.040 -0.684 -0.475 0.833 sum -11.318 15.836 9.489 21.654 Atomic orbital electron populations 1.23319 0.76547 1.05114 1.02523 1.86157 1.23442 1.27314 1.88297 1.19143 0.91764 0.85195 0.95809 1.21522 1.01144 0.91791 1.08766 1.21398 0.94887 0.97675 0.94964 1.21390 0.94277 0.98754 1.03364 1.21170 1.00899 0.90748 0.96003 1.19242 0.90982 0.95114 1.10418 1.19834 0.98532 0.92282 0.84087 1.46056 1.54121 1.26162 1.10662 1.21488 0.76275 0.79362 0.92140 1.90498 1.47450 1.60760 1.48023 1.19063 0.98541 0.96639 0.88720 1.21371 1.32487 1.08891 0.94791 0.92691 1.25818 0.97024 1.01282 0.94777 1.70041 1.45969 1.41119 0.99399 0.85421 0.78774 0.79058 0.77624 1.19633 1.19691 1.19870 0.90990 0.91364 0.87623 0.83200 0.82579 0.83115 0.84377 0.91597 0.93034 0.75914 0.94287 0.94002 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.44 16 2 O -0.34 -9.12 9.73 -92.39 -0.90 -10.02 16 3 C 0.13 3.16 6.66 22.51 0.15 3.31 16 4 C -0.21 -3.88 9.04 22.37 0.20 -3.68 16 5 C -0.07 -1.07 10.04 22.26 0.22 -0.85 16 6 C -0.16 -2.62 10.04 22.28 0.22 -2.40 16 7 C -0.07 -1.50 9.67 22.25 0.22 -1.28 16 8 C -0.16 -4.18 5.26 -19.77 -0.10 -4.29 16 9 C 0.18 5.95 5.46 85.63 0.47 6.42 16 10 N -0.72 -27.63 5.55 -466.79 -2.59 -30.22 16 11 C 0.52 25.73 7.82 87.66 0.69 26.42 16 12 O -0.59 -33.27 15.46 -3.03 -0.05 -33.32 16 13 C 0.01 0.54 5.46 29.10 0.16 0.69 16 14 C -0.54 -32.95 8.92 25.60 0.23 -32.72 16 15 H 0.05 3.54 6.75 -2.91 -0.02 3.52 16 16 C 0.01 0.56 5.46 84.65 0.46 1.02 16 17 N -0.93 -55.52 13.29 21.45 0.28 -55.23 16 18 Si 0.97 46.43 29.54 68.60 2.03 48.46 16 19 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.27 -13.15 7.11 99.48 0.71 -12.45 16 22 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 23 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 24 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.15 1.95 6.30 -2.91 -0.02 1.93 16 26 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 27 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 28 H 0.14 2.65 8.04 -2.91 -0.02 2.63 16 29 H 0.07 2.22 8.00 -2.39 -0.02 2.20 16 30 H 0.05 1.94 7.85 -2.39 -0.02 1.92 16 31 H 0.41 13.87 8.46 -92.71 -0.78 13.08 16 32 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.04 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -75.07 298.12 3.13 -71.94 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.32 Total: 14.31 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 4.03 Total: -5.92 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -2.30 Total: -85.45 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -0.95 Total: -43.34 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -75.07 3.13 -71.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057499131.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.450 kcal (2) G-P(sol) polarization free energy of solvation -75.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds