Wall clock time and date at job start Mon Mar 30 2020 03:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47300 * 2 1 4 4 C 1.52997 * 109.47069 * 239.99906 * 2 1 3 5 5 N 1.46503 * 109.47031 * 65.00100 * 4 2 1 6 6 C 1.36843 * 119.99967 * 84.15072 * 5 4 2 7 7 H 1.08009 * 119.99911 * 214.69914 * 6 5 4 8 8 C 1.38794 * 120.00129 * 34.70066 * 6 5 4 9 9 N 1.31593 * 119.99980 * 22.79749 * 8 6 5 10 10 Si 1.86806 * 120.00033 * 202.79586 * 8 6 5 11 11 H 1.48503 * 109.46852 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.46930 * 120.00199 * 10 8 6 13 13 H 1.48504 * 109.47055 * 240.00204 * 10 8 6 14 14 C 1.39300 * 119.99995 * 264.14868 * 5 4 2 15 15 C 1.39082 * 120.08947 * 359.72558 * 14 5 4 16 16 C 1.38042 * 119.91041 * 179.78990 * 15 14 5 17 17 C 1.38331 * 120.08976 * 0.46304 * 16 15 14 18 18 C 1.38337 * 120.18026 * 359.78676 * 17 16 15 19 19 C 1.38048 * 120.08470 * 359.97438 * 18 17 16 20 20 C 1.50699 * 109.47259 * 120.00203 * 2 1 3 21 21 O 1.20816 * 120.00410 * 119.99984 * 20 2 1 22 22 O 1.34228 * 119.99655 * 299.99966 * 20 2 1 23 23 H 1.09003 * 109.47272 * 300.00007 * 1 2 3 24 24 H 1.08994 * 109.47244 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47344 * 59.99922 * 1 2 3 26 26 H 1.09004 * 109.47245 * 184.99762 * 4 2 1 27 27 H 1.09000 * 109.47381 * 305.00301 * 4 2 1 28 28 H 0.96997 * 119.99456 * 179.97438 * 9 8 6 29 29 H 1.08001 * 120.04480 * 0.02562 * 15 14 5 30 30 H 1.07999 * 119.95754 * 180.25489 * 16 15 14 31 31 H 1.07997 * 119.91313 * 179.76485 * 17 16 15 32 32 H 1.08002 * 119.95425 * 179.97438 * 18 17 16 33 33 H 1.08002 * 120.04172 * 179.97438 * 19 18 17 34 34 H 0.96704 * 116.99991 * 180.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0354 -2.4424 6 6 2.4248 1.0807 -2.8705 7 1 1.9609 1.9462 -3.3202 8 6 3.8043 1.0288 -2.7267 9 7 4.4108 -0.1336 -2.6142 10 14 4.8000 2.6090 -2.6931 11 1 3.8879 3.7719 -2.8377 12 1 5.5283 2.7077 -1.4028 13 1 5.7754 2.6034 -3.8129 14 6 0.4977 -0.3093 -3.1411 15 6 -0.2856 -1.3751 -2.7109 16 6 -1.4315 -1.7108 -3.4036 17 6 -1.7960 -0.9948 -4.5297 18 6 -1.0169 0.0626 -4.9639 19 6 0.1279 0.4078 -4.2739 20 6 2.0324 -0.7104 1.2304 21 8 2.7270 -1.6927 1.1196 22 8 1.7081 -0.2518 2.4495 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 3.1263 -0.7995 -1.2056 27 1 1.6053 -1.7198 -1.2952 28 1 5.3749 -0.1698 -2.5142 29 1 0.0002 -1.9369 -1.8340 30 1 -2.0425 -2.5356 -3.0679 31 1 -2.6910 -1.2623 -5.0717 32 1 -1.3047 0.6189 -5.8438 33 1 0.7359 1.2332 -4.6137 34 1 2.0541 -0.7406 3.2088 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071719175.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:46 Heat of formation + Delta-G solvation = -74.368015 kcal Electronic energy + Delta-G solvation = -18526.123965 eV Core-core repulsion = 15616.356022 eV Total energy + Delta-G solvation = -2909.767943 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.48464 -40.18553 -37.68001 -37.03533 -34.77034 -33.49860 -31.42765 -29.93718 -27.89210 -26.22516 -25.03954 -23.01650 -22.08796 -20.93954 -19.18886 -18.85822 -18.38508 -17.60821 -16.83018 -16.52488 -15.86481 -15.75980 -15.27920 -15.06076 -14.54675 -14.30178 -13.99723 -13.87410 -13.38882 -13.24114 -13.02156 -12.91013 -12.66404 -12.54422 -12.25255 -12.03523 -11.95038 -11.86773 -11.50303 -11.32645 -11.04725 -10.19856 -9.51151 -8.50359 -7.96269 -5.81883 0.88242 1.04708 1.18703 1.42518 1.43164 1.54623 2.03923 2.32302 2.93430 3.29735 3.39639 3.90929 3.96008 4.21486 4.37064 4.41655 4.52095 4.65552 4.73238 4.92986 4.94124 5.00143 5.08201 5.24602 5.28736 5.38931 5.50705 5.53100 5.61460 5.89338 5.94414 6.05420 6.17622 6.52364 6.82194 7.00171 7.49116 7.84853 8.74301 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.011151 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.535781 B = 2510.329922 C = 4007.096976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.094 4.094 3 H 0.102 0.898 4 C 0.131 3.869 5 N -0.465 5.465 6 C -0.321 4.321 7 H 0.086 0.914 8 C -0.011 4.011 9 N -0.896 5.896 10 Si 0.972 3.028 11 H -0.257 1.257 12 H -0.280 1.280 13 H -0.284 1.284 14 C 0.200 3.800 15 C -0.241 4.241 16 C -0.071 4.071 17 C -0.225 4.225 18 C -0.073 4.073 19 C -0.231 4.231 20 C 0.496 3.504 21 O -0.548 6.548 22 O -0.505 6.505 23 H 0.080 0.920 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.266 0.734 29 H 0.109 0.891 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.102 0.898 34 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.121 1.042 5.403 9.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.115 4.115 3 H 0.120 0.880 4 C 0.006 3.994 5 N -0.156 5.156 6 C -0.449 4.449 7 H 0.103 0.897 8 C -0.213 4.213 9 N -0.534 5.534 10 Si 0.797 3.203 11 H -0.181 1.181 12 H -0.206 1.206 13 H -0.210 1.210 14 C 0.089 3.911 15 C -0.264 4.264 16 C -0.090 4.090 17 C -0.246 4.246 18 C -0.092 4.092 19 C -0.255 4.255 20 C 0.339 3.661 21 O -0.438 6.438 22 O -0.318 6.318 23 H 0.099 0.901 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.120 0.880 34 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -7.651 0.999 5.202 9.306 hybrid contribution 1.368 0.188 0.443 1.450 sum -6.283 1.187 5.645 8.529 Atomic orbital electron populations 1.21696 0.90512 1.02655 1.03258 1.21425 0.99547 1.01166 0.89347 0.88038 1.21176 1.02850 0.92547 0.82801 1.42323 1.20532 1.30635 1.22123 1.19508 0.88172 0.96030 1.41197 0.89668 1.26090 0.97909 0.99895 0.97372 1.70094 1.10007 1.25599 1.47654 0.85173 0.78299 0.79201 0.77626 1.18071 1.20571 1.20974 1.18512 0.88689 0.92922 0.91005 1.20689 0.99690 1.00997 1.05052 1.20987 0.94912 0.98470 0.94604 1.20888 1.03000 1.00276 1.00432 1.21015 0.93260 0.96599 0.98294 1.20669 1.01063 1.04710 0.99061 1.23481 0.75754 0.81583 0.85272 1.90694 1.37359 1.27977 1.87809 1.84507 1.71864 1.58924 1.16503 0.90066 0.92094 0.91951 0.89483 0.92929 0.92449 0.87308 0.84852 0.85024 0.85303 0.87958 0.71316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.98 7.75 71.98 0.56 -3.42 16 2 C -0.09 -3.57 3.00 -11.54 -0.03 -3.61 16 3 H 0.10 4.01 8.14 -2.38 -0.02 3.99 16 4 C 0.13 6.10 3.86 86.38 0.33 6.44 16 5 N -0.47 -22.70 2.42 -511.84 -1.24 -23.94 16 6 C -0.32 -16.52 8.53 84.04 0.72 -15.81 16 7 H 0.09 4.33 6.73 -2.91 -0.02 4.32 16 8 C -0.01 -0.58 5.00 84.86 0.42 -0.16 16 9 N -0.90 -49.80 11.28 21.65 0.24 -49.55 16 10 Si 0.97 41.09 29.61 68.60 2.03 43.12 16 11 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 12 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 13 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 14 C 0.20 9.03 5.40 38.36 0.21 9.24 16 15 C -0.24 -9.58 7.70 22.43 0.17 -9.41 16 16 C -0.07 -2.40 10.04 22.25 0.22 -2.18 16 17 C -0.22 -7.33 10.04 22.32 0.22 -7.11 16 18 C -0.07 -2.60 10.04 22.25 0.22 -2.38 16 19 C -0.23 -9.98 9.26 22.43 0.21 -9.78 16 20 C 0.50 17.35 7.63 71.24 0.54 17.89 16 21 O -0.55 -22.84 16.68 21.99 0.37 -22.47 16 22 O -0.50 -12.80 13.33 -51.40 -0.68 -13.49 16 23 H 0.08 2.17 8.11 -2.39 -0.02 2.15 16 24 H 0.06 1.86 7.13 -2.39 -0.02 1.84 16 25 H 0.06 2.22 6.38 -2.39 -0.02 2.21 16 26 H 0.09 4.70 5.16 -2.38 -0.01 4.69 16 27 H 0.05 2.44 5.88 -2.39 -0.01 2.42 16 28 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 29 H 0.11 4.24 4.88 -2.91 -0.01 4.23 16 30 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 31 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 32 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 33 H 0.10 4.62 6.39 -2.91 -0.02 4.60 16 34 H 0.43 6.54 9.10 -74.05 -0.67 5.86 16 Total: -1.00 -63.01 283.27 4.97 -58.03 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.46 Total: 28.57 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 3.80 Total: -20.27 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -1.00 Total: -73.49 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -0.32 Total: -35.96 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -63.01 4.97 -58.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071719175.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.334 kcal (2) G-P(sol) polarization free energy of solvation -63.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds