Wall clock time and date at job start Mon Mar 30 2020 04:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35909 * 116.99958 * 2 1 4 4 C 1.38469 * 119.84242 * 359.97438 * 3 2 1 5 5 C 1.38613 * 119.71258 * 179.97438 * 4 3 2 6 6 O 1.35898 * 120.09674 * 179.97438 * 5 4 3 7 7 C 1.38589 * 119.80560 * 359.69395 * 5 4 3 8 8 C 1.38638 * 120.45690 * 0.52492 * 7 5 4 9 9 C 1.37836 * 119.81436 * 359.60250 * 8 7 5 10 10 C 1.50730 * 121.66308 * 179.97438 * 9 8 7 11 11 C 1.52889 * 109.96435 * 16.83252 * 10 9 8 12 12 N 1.47170 * 108.49196 * 309.61032 * 11 10 9 13 13 C 1.46628 * 110.23300 * 71.30189 * 12 11 10 14 14 H 1.08997 * 109.24591 * 67.70501 * 13 12 11 15 15 C 1.50701 * 109.27370 * 187.19656 * 13 12 11 16 16 H 1.08000 * 120.00349 * 121.01001 * 15 13 12 17 17 C 1.37884 * 119.99673 * 301.01684 * 15 13 12 18 18 N 1.31515 * 120.00110 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99792 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47736 * 59.99509 * 19 17 15 21 21 H 1.48510 * 109.46815 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47008 * 299.99187 * 19 17 15 23 23 H 1.08997 * 109.47197 * 60.00008 * 1 2 3 24 24 H 1.09002 * 109.46781 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47100 * 300.00189 * 1 2 3 26 26 H 1.08007 * 120.14293 * 0.02562 * 4 3 2 27 27 H 0.96707 * 113.99496 * 89.99904 * 6 5 4 28 28 H 1.07999 * 119.76720 * 180.26556 * 7 5 4 29 29 H 1.09001 * 109.40435 * 256.67074 * 10 9 8 30 30 H 1.09000 * 109.29620 * 136.92017 * 10 9 8 31 31 H 1.08997 * 109.63634 * 189.91529 * 11 10 9 32 32 H 1.08997 * 109.63854 * 69.31233 * 11 10 9 33 33 H 1.00896 * 111.00467 * 194.70993 * 12 11 10 34 34 H 0.96999 * 120.00098 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2886 2.3702 -0.0005 5 6 1.9207 3.6038 0.0000 6 8 1.1850 4.7465 -0.0010 7 6 3.3050 3.6685 0.0075 8 6 4.0628 2.5076 0.0035 9 6 3.4360 1.2800 0.0003 10 6 4.2188 -0.0081 -0.0046 11 6 5.6657 0.2588 0.4107 12 7 6.1867 1.3707 -0.4005 13 6 5.5641 2.6331 0.0100 14 1 5.8993 2.8890 1.0151 15 6 5.9759 3.7244 -0.9443 16 1 5.2255 4.2695 -1.4976 17 6 7.3108 4.0267 -1.1111 18 7 8.2245 3.3631 -0.4370 19 14 7.8213 5.3798 -2.2934 20 1 7.2128 6.6655 -1.8670 21 1 9.3009 5.5077 -2.2902 22 1 7.3562 5.0420 -3.6627 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.2100 2.3134 -0.0005 27 1 0.9711 5.0773 0.8821 28 1 3.7968 4.6300 0.0123 29 1 4.2032 -0.4375 -1.0064 30 1 3.7644 -0.7083 0.6963 31 1 6.2670 -0.6337 0.2378 32 1 5.7001 0.5281 1.4664 33 1 7.1921 1.4256 -0.3356 34 1 9.1636 3.5761 -0.5541 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075773623.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:57 Heat of formation + Delta-G solvation = -77.806283 kcal Electronic energy + Delta-G solvation = -18433.019607 eV Core-core repulsion = 15523.102569 eV Total energy + Delta-G solvation = -2909.917037 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.52958 -39.32070 -38.77880 -35.93794 -34.83574 -32.61319 -31.26935 -29.49174 -28.04657 -27.32015 -24.40549 -23.91019 -22.59685 -20.67309 -19.21465 -18.61499 -17.80804 -17.43068 -16.73092 -16.71928 -16.42734 -15.87421 -15.75858 -14.99008 -14.94369 -14.68821 -13.99040 -13.88695 -13.42521 -13.38400 -12.83698 -12.79039 -12.55999 -12.46085 -12.22586 -12.05119 -11.78021 -11.65856 -11.22498 -11.13585 -10.64902 -9.48814 -8.99034 -8.81338 -8.19259 -6.28791 0.32773 0.49454 1.42654 1.44803 1.52403 2.36608 2.43253 2.70856 3.07345 3.29588 3.87731 3.92297 4.05520 4.21563 4.31002 4.43777 4.44552 4.54830 4.65095 4.69632 4.76176 4.80417 4.93153 5.01854 5.14569 5.28840 5.33503 5.49126 5.67668 5.73586 5.76508 6.18408 6.45212 6.58269 6.88300 6.91672 7.06320 7.41982 8.90439 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.024571 B = 0.007785 C = 0.006210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.275670 B = 3595.942112 C = 4507.714915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.324 6.324 3 C 0.138 3.862 4 C -0.243 4.243 5 C 0.135 3.865 6 O -0.503 6.503 7 C -0.186 4.186 8 C -0.013 4.013 9 C -0.140 4.140 10 C -0.050 4.050 11 C 0.046 3.954 12 N -0.687 5.687 13 C 0.250 3.750 14 H -0.023 1.023 15 C -0.520 4.520 16 H 0.056 0.944 17 C 0.025 3.975 18 N -0.920 5.920 19 Si 0.962 3.038 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.276 1.276 23 H 0.059 0.941 24 H 0.124 0.876 25 H 0.066 0.934 26 H 0.159 0.841 27 H 0.409 0.591 28 H 0.118 0.882 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.012 0.988 33 H 0.353 0.647 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.828 -4.772 3.470 15.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.238 6.238 3 C 0.092 3.908 4 C -0.262 4.262 5 C 0.091 3.909 6 O -0.316 6.316 7 C -0.205 4.205 8 C -0.014 4.014 9 C -0.141 4.141 10 C -0.087 4.087 11 C -0.083 4.083 12 N -0.322 5.322 13 C 0.141 3.859 14 H -0.006 1.006 15 C -0.558 4.558 16 H 0.074 0.926 17 C -0.175 4.175 18 N -0.560 5.560 19 Si 0.788 3.212 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.202 1.202 23 H 0.078 0.922 24 H 0.142 0.858 25 H 0.084 0.916 26 H 0.177 0.823 27 H 0.268 0.732 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.030 0.970 33 H 0.176 0.824 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.951 -5.143 2.379 15.058 hybrid contribution 0.895 1.258 0.801 1.739 sum -13.056 -3.884 3.180 13.988 Atomic orbital electron populations 1.23366 0.76521 1.05662 1.02143 1.86046 1.23347 1.25841 1.88555 1.18652 0.90917 0.84743 0.96493 1.21403 1.01208 0.90865 1.12745 1.18022 0.88493 0.85880 0.98525 1.84734 1.72351 1.39214 1.35304 1.21358 0.93379 0.98976 1.06834 1.19839 0.96455 0.91732 0.93406 1.19215 0.91070 0.95900 1.07871 1.20227 0.93297 0.93286 1.01886 1.22053 0.96352 0.95711 0.94230 1.61028 1.12691 1.03412 1.55116 1.17803 0.86047 0.88874 0.93127 1.00576 1.21338 0.92488 1.16683 1.25309 0.92602 1.25702 0.96398 0.98446 0.96912 1.69733 1.01297 1.42577 1.42425 0.85553 0.77066 0.79359 0.79267 1.19626 1.20429 1.20182 0.92206 0.85813 0.91555 0.82350 0.73204 0.86446 0.91146 0.89496 0.89878 0.96994 0.82439 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.32 -9.35 9.62 -92.53 -0.89 -10.25 16 3 C 0.14 4.77 6.65 22.55 0.15 4.92 16 4 C -0.24 -7.67 8.97 22.41 0.20 -7.47 16 5 C 0.14 4.79 6.70 22.44 0.15 4.94 16 6 O -0.50 -14.75 13.50 -92.41 -1.25 -16.00 16 7 C -0.19 -8.05 8.66 22.45 0.19 -7.85 16 8 C -0.01 -0.63 5.46 -19.88 -0.11 -0.74 16 9 C -0.14 -5.75 5.79 -19.72 -0.11 -5.86 16 10 C -0.05 -1.86 5.54 29.82 0.17 -1.70 16 11 C 0.05 1.90 6.59 86.21 0.57 2.47 16 12 N -0.69 -34.64 6.43 -499.63 -3.21 -37.85 16 13 C 0.25 13.29 2.46 43.46 0.11 13.39 16 14 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 15 C -0.52 -29.44 7.99 25.60 0.20 -29.24 16 16 H 0.06 3.18 6.72 -2.91 -0.02 3.16 16 17 C 0.03 1.39 5.37 84.66 0.46 1.84 16 18 N -0.92 -52.00 11.46 21.45 0.25 -51.75 16 19 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H 0.06 1.01 7.65 -2.39 -0.02 0.99 16 24 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.07 1.01 7.65 -2.39 -0.02 0.99 16 26 H 0.16 3.81 6.28 -2.91 -0.02 3.79 16 27 H 0.41 7.37 9.06 -74.05 -0.67 6.70 16 28 H 0.12 5.35 7.09 -2.91 -0.02 5.33 16 29 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.09 2.80 7.84 -2.39 -0.02 2.78 16 31 H 0.08 2.95 8.14 -2.39 -0.02 2.94 16 32 H 0.01 0.50 8.05 -2.39 -0.02 0.48 16 33 H 0.35 18.91 6.79 -89.70 -0.61 18.30 16 34 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -66.61 279.86 -0.13 -66.75 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: -0.14 Total: 26.75 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 3.08 Total: -23.88 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -2.97 Total: -89.60 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -2.14 Total: -26.25 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -66.61 -0.13 -66.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075773623.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.057 kcal (2) G-P(sol) polarization free energy of solvation -66.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds