Wall clock time and date at job start Mon Mar 30 2020 04:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35990 * 116.99837 * 2 1 4 4 C 1.39001 * 119.88305 * 84.58625 * 3 2 1 5 5 O 1.35995 * 120.14190 * 359.97438 * 4 3 2 6 6 C 1.38528 * 119.70795 * 179.97438 * 4 3 2 7 7 C 1.38097 * 119.83607 * 359.91899 * 6 4 3 8 8 C 1.38652 * 120.51727 * 0.02850 * 7 6 4 9 9 C 1.37927 * 119.95505 * 0.11090 * 8 7 6 10 10 C 1.50626 * 121.86182 * 179.73780 * 9 8 7 11 11 H 1.09001 * 109.28971 * 257.15192 * 10 9 8 12 12 C 1.50696 * 109.30880 * 137.77404 * 10 9 8 13 13 H 1.08001 * 120.00203 * 353.48058 * 12 10 9 14 14 C 1.37877 * 120.00106 * 173.47937 * 12 10 9 15 15 N 1.31519 * 119.99857 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 120.00121 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46838 * 60.00080 * 16 14 12 18 18 H 1.48497 * 109.46798 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47285 * 299.99793 * 16 14 12 20 20 N 1.46637 * 110.48947 * 17.45489 * 10 9 8 21 21 C 1.47165 * 110.22941 * 307.46497 * 20 10 9 22 22 C 1.50744 * 118.42507 * 180.13803 * 8 7 6 23 23 H 1.08997 * 109.47348 * 61.26385 * 1 2 3 24 24 H 1.09002 * 109.47122 * 181.26856 * 1 2 3 25 25 H 1.08999 * 109.46787 * 301.26221 * 1 2 3 26 26 H 0.96700 * 113.99793 * 90.00209 * 5 4 3 27 27 H 1.08000 * 120.08197 * 179.97438 * 6 4 3 28 28 H 1.07999 * 119.73938 * 180.02562 * 7 6 4 29 29 H 0.96996 * 120.00310 * 180.02562 * 15 14 12 30 30 H 1.00898 * 111.00006 * 184.05158 * 20 10 9 31 31 H 1.09004 * 109.62733 * 191.02944 * 21 20 10 32 32 H 1.08993 * 109.62899 * 311.41035 * 21 20 10 33 33 H 1.08998 * 109.38930 * 76.59851 * 22 8 7 34 34 H 1.08998 * 109.30491 * 316.85205 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.2595 1.8804 1.1998 5 8 1.8515 1.3257 2.3726 6 6 2.8892 3.1143 1.1957 7 6 3.3023 3.6708 0.0012 8 6 3.0914 3.0044 -1.1962 9 6 2.4625 1.7768 -1.1998 10 6 2.2063 1.0184 -2.4756 11 1 1.1576 1.1245 -2.7533 12 6 2.5144 -0.4407 -2.2584 13 1 2.9593 -0.7662 -1.3297 14 6 2.2283 -1.3601 -3.2453 15 7 1.6870 -0.9636 -4.3764 16 14 2.6109 -3.1686 -2.9762 17 1 1.8581 -3.6635 -1.7957 18 1 2.2119 -3.9431 -4.1788 19 1 4.0674 -3.3368 -2.7407 20 7 3.0491 1.5357 -3.5584 21 6 2.8897 2.9941 -3.6747 22 6 3.5643 3.6538 -2.4718 23 1 -0.3634 0.4941 -0.9011 24 1 -0.3633 -1.0274 0.0228 25 1 -0.3633 0.5333 0.8785 26 1 2.5170 0.7657 2.7953 27 1 3.0574 3.6393 2.1243 28 1 3.7934 4.6326 -0.0002 29 1 1.4854 -1.6104 -5.0706 30 1 2.8369 1.0778 -4.4321 31 1 3.3602 3.3416 -4.5946 32 1 1.8295 3.2467 -3.6878 33 1 4.6451 3.5410 -2.5562 34 1 3.3116 4.7139 -2.4516 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083704594.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:05 Heat of formation + Delta-G solvation = -48.729675 kcal Electronic energy + Delta-G solvation = -18978.441093 eV Core-core repulsion = 16069.784912 eV Total energy + Delta-G solvation = -2908.656181 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.95386 -37.36056 -36.75541 -34.85771 -32.70402 -30.74257 -29.68904 -27.98005 -26.03223 -25.39183 -22.79140 -22.32459 -20.94115 -19.17765 -17.50569 -16.86174 -16.32599 -15.79594 -15.21318 -14.56947 -14.40772 -14.20527 -13.89180 -13.51324 -13.29447 -12.76974 -12.33027 -12.10321 -12.00657 -11.90363 -11.30930 -11.05664 -10.85991 -10.70596 -10.62382 -10.30727 -10.15216 -9.73658 -9.27246 -8.76958 -8.48777 -7.93900 -7.77917 -6.98891 -6.03298 -3.99695 1.68719 1.89708 3.37672 3.40561 3.45869 3.95874 4.49365 4.55864 4.80242 5.17715 5.28914 5.42559 5.68597 5.71211 5.78430 5.91626 6.02487 6.08470 6.11076 6.20743 6.24835 6.36187 6.42156 6.58406 6.63355 6.78248 6.95684 7.16001 7.23864 7.28463 7.91947 7.98288 8.16385 8.43875 8.59963 8.92599 9.04911 9.62808 11.08172 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019843 B = 0.010857 C = 0.007753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.742752 B = 2578.453526 C = 3610.713889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.301 6.301 3 C 0.088 3.912 4 C 0.063 3.937 5 O -0.497 6.497 6 C -0.153 4.153 7 C -0.122 4.122 8 C -0.080 4.080 9 C -0.042 4.042 10 C 0.248 3.752 11 H 0.014 0.986 12 C -0.464 4.464 13 H 0.070 0.930 14 C 0.061 3.939 15 N -0.909 5.909 16 Si 0.899 3.101 17 H -0.277 1.277 18 H -0.291 1.291 19 H -0.277 1.277 20 N -0.676 5.676 21 C 0.046 3.954 22 C -0.068 4.068 23 H 0.041 0.959 24 H 0.083 0.917 25 H 0.032 0.968 26 H 0.383 0.617 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.262 0.738 30 H 0.361 0.639 31 H 0.060 0.940 32 H 0.018 0.982 33 H 0.076 0.924 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.721 6.956 6.777 9.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.216 6.216 3 C 0.043 3.957 4 C 0.018 3.982 5 O -0.306 6.306 6 C -0.172 4.172 7 C -0.140 4.140 8 C -0.080 4.080 9 C -0.044 4.044 10 C 0.141 3.859 11 H 0.031 0.969 12 C -0.503 4.503 13 H 0.088 0.912 14 C -0.139 4.139 15 N -0.550 5.550 16 Si 0.728 3.272 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.203 1.203 20 N -0.311 5.311 21 C -0.085 4.085 22 C -0.106 4.106 23 H 0.059 0.941 24 H 0.102 0.898 25 H 0.051 0.949 26 H 0.238 0.762 27 H 0.139 0.861 28 H 0.136 0.864 29 H 0.072 0.928 30 H 0.184 0.816 31 H 0.078 0.922 32 H 0.036 0.964 33 H 0.095 0.905 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.774 7.030 6.864 9.856 hybrid contribution -0.415 -0.976 -0.140 1.070 sum 0.358 6.054 6.724 9.055 Atomic orbital electron populations 1.22717 0.80404 1.02167 0.99258 1.86243 1.18500 1.23106 1.93785 1.18984 0.98958 0.86755 0.90963 1.18823 1.00954 0.93219 0.85164 1.84756 1.43676 1.67411 1.34757 1.21017 1.01583 0.96193 0.98391 1.20863 1.01499 0.99981 0.91685 1.19637 0.99013 0.94440 0.94942 1.20608 0.94943 0.92321 0.96489 1.17955 0.91414 0.92931 0.83568 0.96871 1.21033 1.39481 0.88975 1.00851 0.91189 1.24948 0.94812 0.99026 0.95109 1.69757 1.44304 1.34726 1.06210 0.86530 0.78856 0.84660 0.77184 1.20263 1.21661 1.20312 1.61160 1.58446 1.00093 1.11392 1.21913 0.97093 0.93019 0.96440 1.20475 1.00731 0.97347 0.92013 0.94058 0.89821 0.94904 0.76223 0.86138 0.86417 0.92828 0.81640 0.92163 0.96432 0.90548 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.94 11.13 101.05 1.13 2.07 16 2 O -0.30 -6.73 7.03 -34.43 -0.24 -6.97 16 3 C 0.09 1.91 5.27 -39.02 -0.21 1.70 16 4 C 0.06 1.17 6.71 -39.19 -0.26 0.91 16 5 O -0.50 -8.16 13.29 -34.45 -0.46 -8.62 16 6 C -0.15 -2.53 9.99 -39.53 -0.39 -2.92 16 7 C -0.12 -2.03 9.64 -39.48 -0.38 -2.41 16 8 C -0.08 -1.56 5.77 -104.56 -0.60 -2.16 16 9 C -0.04 -0.96 5.47 -104.49 -0.57 -1.53 16 10 C 0.25 6.27 2.22 -70.20 -0.16 6.12 16 11 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 12 C -0.46 -12.65 6.97 -34.44 -0.24 -12.89 16 13 H 0.07 1.98 6.35 -52.49 -0.33 1.65 16 14 C 0.06 1.67 5.39 -17.82 -0.10 1.57 16 15 N -0.91 -25.21 11.90 55.43 0.66 -24.55 16 16 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 N -0.68 -16.07 6.46 -109.28 -0.71 -16.77 16 21 C 0.05 0.89 6.58 -3.74 -0.02 0.86 16 22 C -0.07 -1.18 5.94 -27.92 -0.17 -1.35 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.38 4.65 9.06 45.56 0.41 5.06 16 27 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.36 9.14 7.31 -39.29 -0.29 8.85 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 282.80 15.07 4.26 4.26 Total: -1.00 -30.01 282.80 -7.05 -37.06 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -3.56 Total: 8.99 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -1.98 Total: -10.02 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -0.05 Total: -41.33 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.70 Total: -15.59 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.01 -7.05 -37.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083704594.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.671 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds