Wall clock time and date at job start Mon Mar 30 2020 04:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99676 * 2 1 4 4 C 1.38653 * 120.09770 * 359.97129 * 3 2 1 5 5 C 1.38432 * 119.71301 * 180.12148 * 4 3 2 6 6 O 1.35897 * 119.84581 * 180.02562 * 5 4 3 7 7 C 1.39220 * 120.30912 * 0.02562 * 5 4 3 8 8 C 1.37793 * 119.89795 * 359.57984 * 7 5 4 9 9 C 1.38549 * 120.09085 * 180.02562 * 3 2 1 10 10 C 1.50644 * 121.83459 * 180.73085 * 8 7 5 11 11 H 1.08999 * 109.30435 * 102.49659 * 10 8 7 12 12 C 1.50704 * 109.29940 * 222.07586 * 10 8 7 13 13 H 1.08004 * 120.00056 * 359.97438 * 12 10 8 14 14 C 1.37878 * 119.99852 * 180.02562 * 12 10 8 15 15 N 1.31510 * 119.99637 * 179.97438 * 14 12 10 16 16 Si 1.86802 * 120.00097 * 359.97438 * 14 12 10 17 17 H 1.48499 * 109.46827 * 90.00326 * 16 14 12 18 18 H 1.48496 * 109.47008 * 210.00292 * 16 14 12 19 19 H 1.48493 * 109.47198 * 330.00696 * 16 14 12 20 20 N 1.46626 * 110.49189 * 342.38712 * 10 8 7 21 21 C 1.47162 * 110.24148 * 52.63849 * 20 10 8 22 22 C 1.50723 * 118.44270 * 179.53185 * 7 5 4 23 23 H 1.09002 * 109.46937 * 300.00275 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00237 * 1 2 3 25 25 H 1.08995 * 109.47354 * 180.02562 * 1 2 3 26 26 H 1.08004 * 120.14855 * 0.15294 * 4 3 2 27 27 H 0.96699 * 113.99913 * 90.00454 * 6 5 4 28 28 H 1.08002 * 119.77089 * 359.91958 * 9 3 2 29 29 H 0.97003 * 120.00132 * 179.97438 * 15 14 12 30 30 H 1.00901 * 111.00196 * 289.22815 * 20 10 8 31 31 H 1.09005 * 109.62280 * 48.49925 * 21 20 10 32 32 H 1.08999 * 109.62869 * 169.08055 * 21 20 10 33 33 H 1.09006 * 109.38379 * 283.37102 * 22 7 5 34 34 H 1.09004 * 109.38808 * 43.05909 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2927 2.3750 -0.0006 5 6 1.9294 3.6042 -0.0031 6 8 1.1937 4.7469 -0.0032 7 6 3.3197 3.6753 -0.0056 8 6 4.0667 2.5174 0.0032 9 6 3.4294 1.2857 -0.0005 10 6 5.5729 2.5436 0.0173 11 1 5.9276 2.3289 1.0253 12 6 6.0981 1.4951 -0.9294 13 1 5.4096 0.8741 -1.4832 14 6 7.4575 1.3280 -1.0875 15 7 7.9158 0.4128 -1.9132 16 14 8.6483 2.4017 -0.1290 17 1 8.9699 1.7500 1.1660 18 1 9.8949 2.5823 -0.9154 19 1 8.0266 3.7262 0.1244 20 7 6.0672 3.8607 -0.3958 21 6 5.4346 4.9175 0.4096 22 6 3.9690 5.0355 -0.0192 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.2139 2.3230 0.0014 27 1 0.9824 5.0786 0.8802 28 1 4.0155 0.3785 0.0004 29 1 8.8722 0.2954 -2.0248 30 1 5.9098 4.0135 -1.3807 31 1 5.4937 4.6572 1.4664 32 1 5.9432 5.8655 0.2341 33 1 3.9089 5.4551 -1.0235 34 1 3.4477 5.6922 0.6774 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083708720.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:59 Heat of formation + Delta-G solvation = -69.697297 kcal Electronic energy + Delta-G solvation = -18482.355026 eV Core-core repulsion = 15572.789621 eV Total energy + Delta-G solvation = -2909.565405 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.62430 -39.76567 -38.58888 -36.10183 -34.81221 -32.71152 -31.21108 -30.05233 -27.87422 -27.18663 -24.44352 -23.84783 -22.57020 -21.00175 -19.41389 -18.96057 -17.97033 -17.36857 -16.92672 -16.65333 -16.30894 -15.72768 -15.47859 -15.09416 -15.00210 -14.73208 -14.19208 -14.12245 -13.44994 -13.23827 -13.05906 -12.89327 -12.59541 -12.39189 -12.16014 -11.96108 -11.82962 -11.48084 -11.34609 -11.15946 -10.70173 -9.55649 -8.98134 -8.73071 -8.22027 -6.35818 0.28963 0.40865 1.54019 1.60517 1.98265 2.36167 2.63155 2.64624 3.13512 3.23062 3.74087 3.93340 3.95715 4.12075 4.21707 4.36130 4.36915 4.42617 4.49567 4.65972 4.71066 4.85197 4.96278 4.98794 5.12548 5.19126 5.29268 5.40389 5.41105 5.70146 5.83985 6.17021 6.38968 6.44623 6.78231 6.81438 6.86410 7.40595 8.90713 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023025 B = 0.008514 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.793349 B = 3287.953595 C = 4331.212257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.127 3.873 4 C -0.240 4.240 5 C 0.144 3.856 6 O -0.494 6.494 7 C -0.159 4.159 8 C -0.038 4.038 9 C -0.168 4.168 10 C 0.225 3.775 11 H 0.047 0.953 12 C -0.522 4.522 13 H 0.032 0.968 14 C 0.026 3.974 15 N -0.949 5.949 16 Si 0.919 3.081 17 H -0.302 1.302 18 H -0.314 1.314 19 H -0.144 1.144 20 N -0.678 5.678 21 C 0.046 3.954 22 C -0.091 4.091 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.119 0.881 26 H 0.157 0.843 27 H 0.409 0.591 28 H 0.106 0.894 29 H 0.263 0.737 30 H 0.336 0.664 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.959 9.773 7.838 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.082 3.918 4 C -0.259 4.259 5 C 0.099 3.901 6 O -0.308 6.308 7 C -0.160 4.160 8 C -0.040 4.040 9 C -0.187 4.187 10 C 0.116 3.884 11 H 0.065 0.935 12 C -0.560 4.560 13 H 0.050 0.950 14 C -0.172 4.172 15 N -0.589 5.589 16 Si 0.744 3.256 17 H -0.230 1.230 18 H -0.243 1.243 19 H -0.064 1.064 20 N -0.308 5.308 21 C -0.083 4.083 22 C -0.129 4.129 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.138 0.862 26 H 0.174 0.826 27 H 0.269 0.731 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.154 0.846 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.151 9.462 7.561 18.627 hybrid contribution -0.296 -0.603 -0.050 0.673 sum -14.447 8.860 7.511 18.537 Atomic orbital electron populations 1.23359 0.76306 1.05594 1.02295 1.86083 1.23741 1.26773 1.88818 1.18803 0.91602 0.84771 0.96617 1.21443 1.01169 0.91033 1.12274 1.17993 0.88369 0.85582 0.98183 1.84739 1.72231 1.38632 1.35160 1.20065 0.93004 0.96036 1.06913 1.20369 0.98035 0.91476 0.94156 1.20515 0.91738 0.98849 1.07596 1.18245 0.85540 0.88320 0.96272 0.93503 1.21120 0.92068 1.17338 1.25497 0.95021 1.25930 1.00573 0.95551 0.95171 1.70100 1.14289 1.35767 1.38711 0.86483 0.75881 0.86674 0.76564 1.22956 1.24255 1.06385 1.61863 1.58003 1.02041 1.08858 1.22307 0.91573 0.96130 0.98314 1.20958 0.97310 0.92078 1.02588 0.91139 0.92042 0.86236 0.82574 0.73139 0.87584 0.92887 0.84558 0.91134 0.88566 0.91045 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.34 -11.37 10.50 -92.39 -0.97 -12.34 16 3 C 0.13 4.64 6.68 22.44 0.15 4.79 16 4 C -0.24 -7.21 8.97 22.42 0.20 -7.01 16 5 C 0.14 4.29 6.66 22.55 0.15 4.44 16 6 O -0.49 -11.22 12.62 -92.39 -1.17 -12.39 16 7 C -0.16 -5.43 5.78 -19.73 -0.11 -5.54 16 8 C -0.04 -1.60 5.47 -19.88 -0.11 -1.71 16 9 C -0.17 -7.31 8.67 22.45 0.19 -7.11 16 10 C 0.22 10.32 1.91 43.46 0.08 10.40 16 11 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 12 C -0.52 -29.82 8.43 25.60 0.22 -29.61 16 13 H 0.03 2.05 6.94 -2.91 -0.02 2.03 16 14 C 0.03 1.56 5.47 84.66 0.46 2.02 16 15 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 16 Si 0.92 44.01 26.92 68.60 1.85 45.86 16 17 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 18 H -0.31 -15.53 7.11 99.48 0.71 -14.83 16 19 H -0.14 -5.96 5.11 99.48 0.51 -5.45 16 20 N -0.68 -26.69 3.12 -499.14 -1.56 -28.25 16 21 C 0.05 1.35 6.64 86.31 0.57 1.92 16 22 C -0.09 -2.49 5.42 29.91 0.16 -2.33 16 23 H 0.07 1.17 7.66 -2.39 -0.02 1.15 16 24 H 0.06 1.15 7.67 -2.39 -0.02 1.13 16 25 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.16 3.61 6.32 -2.91 -0.02 3.59 16 27 H 0.41 4.86 9.06 -74.06 -0.67 4.19 16 28 H 0.11 5.26 7.05 -2.91 -0.02 5.24 16 29 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 30 H 0.34 13.69 8.54 -89.69 -0.77 12.93 16 31 H 0.07 2.04 8.05 -2.38 -0.02 2.02 16 32 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.10 2.03 7.84 -2.39 -0.02 2.01 16 Total: -1.00 -73.41 275.80 1.04 -72.37 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -0.50 Total: 23.49 kcal Atomic # 6 Polarization: -31.33 SS G_CDS: 3.08 Total: -28.24 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -1.26 Total: -88.75 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -2.14 Total: -24.73 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.85 Total: 45.86 kcal Total: -73.41 1.04 -72.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083708720.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.677 kcal (2) G-P(sol) polarization free energy of solvation -73.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds