Wall clock time and date at job start Mon Mar 30 2020 04:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34880 * 117.00068 * 2 1 4 4 O 1.21602 * 120.00270 * 359.97438 * 3 2 1 5 5 C 1.46817 * 120.00094 * 180.02562 * 3 2 1 6 6 C 1.40947 * 126.73198 * 354.13371 * 5 3 2 7 7 C 1.35282 * 107.92296 * 179.97438 * 6 5 3 8 8 N 1.36707 * 109.48311 * 0.04233 * 7 6 5 9 9 C 1.37261 * 108.94781 * 359.92607 * 8 7 6 10 10 C 1.39227 * 126.44401 * 180.02562 * 9 8 7 11 11 H 1.07994 * 120.00164 * 313.88299 * 10 9 8 12 12 C 1.40595 * 119.99817 * 133.88393 * 10 9 8 13 13 N 1.30506 * 120.00342 * 158.53588 * 12 10 9 14 14 Si 1.86806 * 120.00064 * 338.53333 * 12 10 9 15 15 H 1.48507 * 109.46773 * 94.12256 * 14 12 10 16 16 H 1.48494 * 109.47300 * 214.12177 * 14 12 10 17 17 H 1.48498 * 109.46961 * 334.12303 * 14 12 10 18 18 C 1.46809 * 124.38886 * 179.97438 * 8 7 6 19 19 C 1.53189 * 108.81404 * 342.71094 * 18 8 7 20 20 C 1.53134 * 109.53646 * 50.82295 * 19 18 8 21 21 C 1.51196 * 126.57861 * 180.11472 * 7 6 5 22 22 H 1.08999 * 109.47380 * 59.99857 * 1 2 3 23 23 H 1.09006 * 109.47033 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46813 * 299.99828 * 1 2 3 25 25 H 1.07997 * 126.03796 * 359.97438 * 6 5 3 26 26 H 0.97000 * 120.00301 * 179.97438 * 13 12 10 27 27 H 1.09000 * 109.58135 * 222.91410 * 18 8 7 28 28 H 1.08997 * 109.58465 * 102.51437 * 18 8 7 29 29 H 1.09000 * 109.46110 * 290.80086 * 19 18 8 30 30 H 1.09004 * 109.46083 * 170.84756 * 19 18 8 31 31 H 1.09003 * 109.50956 * 49.90032 * 20 19 18 32 32 H 1.08997 * 109.51505 * 170.05756 * 20 19 18 33 33 H 1.09006 * 109.71542 * 44.32089 * 21 7 6 34 34 H 1.08994 * 109.72075 * 283.67254 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4022 2.2217 -0.0005 5 6 3.5306 1.2786 -0.0006 6 6 4.4312 0.2006 0.1143 7 6 5.6873 0.7008 0.0688 8 7 5.6322 2.0597 -0.0701 9 6 4.3170 2.4499 -0.1173 10 6 3.8452 3.7527 -0.2533 11 1 4.2684 4.5456 0.3455 12 6 2.8177 4.0361 -1.1702 13 7 2.0910 5.1103 -1.0244 14 14 2.4928 2.8751 -2.5971 15 1 1.4299 1.9098 -2.2176 16 1 2.0522 3.6565 -3.7805 17 1 3.7378 2.1362 -2.9274 18 6 6.8092 2.9332 -0.1535 19 6 8.0307 2.1669 0.3637 20 6 8.1183 0.8089 -0.3385 21 6 6.9748 -0.0875 0.1532 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 4.1655 -0.8408 0.2200 26 1 1.3824 5.3060 -1.6572 27 1 6.6492 3.8211 0.4581 28 1 6.9739 3.2263 -1.1903 29 1 7.9352 2.0144 1.4387 30 1 8.9338 2.7414 0.1575 31 1 8.0336 0.9501 -1.4160 32 1 9.0743 0.3397 -0.1060 33 1 6.9057 -0.9732 -0.4783 34 1 7.1569 -0.3847 1.1859 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116054585.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:03 Heat of formation + Delta-G solvation = -69.854229 kcal Electronic energy + Delta-G solvation = -18827.903480 eV Core-core repulsion = 15918.331270 eV Total energy + Delta-G solvation = -2909.572210 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.96779 -40.59902 -37.22179 -36.45337 -35.21378 -33.39614 -30.99595 -29.81401 -28.27610 -26.36478 -25.01884 -23.08997 -22.10477 -21.05953 -19.47602 -19.00844 -17.90604 -17.65987 -16.92816 -16.69146 -16.13509 -15.88014 -15.09937 -14.83059 -14.62863 -14.44538 -14.22745 -14.15945 -13.80577 -13.45347 -13.30033 -12.83284 -12.72043 -12.38527 -12.05433 -12.00178 -11.82095 -11.61418 -11.57123 -11.39260 -11.14370 -10.75053 -9.33928 -8.86304 -8.66981 -6.48169 0.78946 1.21738 1.27665 1.43898 1.72466 2.02109 2.18680 2.55468 2.65692 3.11210 3.83179 3.94003 4.03999 4.19427 4.33480 4.39605 4.50815 4.55841 4.60795 4.73550 4.81572 4.85452 4.97924 5.01559 5.08069 5.11193 5.22294 5.42731 5.44624 5.51708 5.72538 5.82747 6.21420 6.48474 6.59109 6.86178 7.12370 7.35498 8.24776 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022403 B = 0.010406 C = 0.008020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.554178 B = 2690.145209 C = 3490.539737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.374 6.374 3 C 0.517 3.483 4 O -0.547 6.547 5 C -0.356 4.356 6 C -0.158 4.158 7 C -0.035 4.035 8 N -0.475 5.475 9 C 0.269 3.731 10 C -0.503 4.503 11 H 0.065 0.935 12 C 0.115 3.885 13 N -0.830 5.830 14 Si 0.946 3.054 15 H -0.275 1.275 16 H -0.271 1.271 17 H -0.265 1.265 18 C 0.107 3.893 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.039 4.039 22 H 0.043 0.957 23 H 0.137 0.863 24 H 0.053 0.947 25 H 0.140 0.860 26 H 0.288 0.712 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.132 -9.905 -0.476 13.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.291 6.291 3 C 0.369 3.631 4 O -0.441 6.441 5 C -0.362 4.362 6 C -0.182 4.182 7 C -0.140 4.140 8 N -0.157 5.157 9 C 0.154 3.846 10 C -0.537 4.537 11 H 0.082 0.918 12 C -0.105 4.105 13 N -0.457 5.457 14 Si 0.771 3.229 15 H -0.201 1.201 16 H -0.197 1.197 17 H -0.189 1.189 18 C -0.014 4.014 19 C -0.160 4.160 20 C -0.155 4.155 21 C -0.077 4.077 22 H 0.062 0.938 23 H 0.155 0.845 24 H 0.072 0.928 25 H 0.158 0.842 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.076 -9.296 -0.526 13.002 hybrid contribution -1.242 0.321 -0.349 1.329 sum 7.834 -8.974 -0.875 11.945 Atomic orbital electron populations 1.23356 0.76282 1.05010 1.01347 1.86531 1.23766 1.33182 1.85667 1.20503 0.89043 0.80727 0.72818 1.90770 1.67206 1.36219 1.49939 1.18723 0.88229 0.95907 1.33383 1.20439 0.91216 0.97567 1.08930 1.20828 0.96779 0.82877 1.13522 1.44929 1.05195 1.06532 1.59037 1.17759 0.81930 0.92313 0.92593 1.17948 1.19037 0.92594 1.24076 0.91753 1.26034 0.90864 0.94727 0.98900 1.69507 1.14789 1.26958 1.34414 0.85940 0.79480 0.79804 0.77680 1.20069 1.19709 1.18918 1.21936 0.84048 0.93276 1.02105 1.21858 0.96225 0.97147 1.00721 1.21620 0.99138 0.94703 1.00002 1.20365 0.87974 0.96781 1.02571 0.93849 0.84455 0.92792 0.84206 0.90180 0.91274 0.90889 0.91350 0.87258 0.92230 0.87881 0.89117 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.18 10.57 113.37 1.20 2.38 16 2 O -0.37 -16.92 10.43 -57.94 -0.60 -17.53 16 3 C 0.52 27.71 5.73 70.07 0.40 28.11 16 4 O -0.55 -32.31 11.91 19.50 0.23 -32.08 16 5 C -0.36 -18.79 5.09 -19.55 -0.10 -18.89 16 6 C -0.16 -6.97 10.57 22.25 0.24 -6.73 16 7 C -0.04 -1.39 6.56 41.27 0.27 -1.12 16 8 N -0.47 -20.84 3.18 -498.47 -1.58 -22.43 16 9 C 0.27 14.45 5.45 39.35 0.21 14.67 16 10 C -0.50 -29.66 9.04 23.08 0.21 -29.45 16 11 H 0.06 3.98 8.06 -2.91 -0.02 3.96 16 12 C 0.11 6.73 3.82 85.46 0.33 7.05 16 13 N -0.83 -49.57 13.91 21.94 0.31 -49.26 16 14 Si 0.95 49.21 24.33 68.60 1.67 50.87 16 15 H -0.27 -14.80 5.65 99.48 0.56 -14.23 16 16 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.26 -13.70 7.11 99.48 0.71 -13.00 16 18 C 0.11 3.66 6.63 86.38 0.57 4.23 16 19 C -0.12 -2.85 5.93 30.70 0.18 -2.66 16 20 C -0.12 -2.50 5.96 30.77 0.18 -2.32 16 21 C -0.04 -1.02 6.27 30.14 0.19 -0.84 16 22 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 23 H 0.14 3.35 8.14 -2.38 -0.02 3.33 16 24 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.14 5.44 8.06 -2.91 -0.02 5.42 16 26 H 0.29 15.85 8.29 -92.71 -0.77 15.09 16 27 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.07 1.62 8.11 -2.39 -0.02 1.60 16 30 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.06 1.36 8.12 -2.39 -0.02 1.34 16 32 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -74.01 279.10 4.85 -69.17 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 0.95 Total: 6.82 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 3.88 Total: -5.57 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -1.28 Total: -71.69 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -0.37 Total: -49.61 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 1.67 Total: 50.87 kcal Total: -74.01 4.85 -69.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116054585.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.688 kcal (2) G-P(sol) polarization free energy of solvation -74.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds