Wall clock time and date at job start Mon Mar 30 2020 03:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.46938 * 2 1 4 4 C 1.36876 * 120.00254 * 82.74788 * 3 2 1 5 5 H 1.08002 * 120.00489 * 171.52042 * 4 3 2 6 6 C 1.39047 * 119.99675 * 351.51911 * 4 3 2 7 7 N 1.31366 * 119.99869 * 1.62883 * 6 4 3 8 8 Si 1.86801 * 120.00039 * 181.63238 * 6 4 3 9 9 H 1.48504 * 109.47019 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47445 * 120.00005 * 8 6 4 11 11 H 1.48504 * 109.47022 * 239.99840 * 8 6 4 12 12 C 1.34781 * 120.00239 * 262.74378 * 3 2 1 13 13 O 1.21585 * 120.00166 * 184.69098 * 12 3 2 14 14 C 1.47742 * 119.99654 * 4.68637 * 12 3 2 15 15 C 1.39673 * 120.12539 * 299.57872 * 14 12 3 16 16 C 1.37945 * 119.95784 * 179.73741 * 15 14 12 17 17 C 1.38305 * 120.21184 * 0.51962 * 16 15 14 18 18 C 1.38825 * 120.25186 * 359.75803 * 17 16 15 19 19 O 1.35910 * 119.98133 * 179.97438 * 18 17 16 20 20 C 1.38475 * 120.03989 * 359.97438 * 18 17 16 21 21 C 1.50694 * 120.10936 * 180.02562 * 20 18 17 22 22 H 1.09002 * 109.47411 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47238 * 299.99892 * 1 2 3 24 24 H 1.09001 * 109.47207 * 59.99679 * 1 2 3 25 25 H 1.08994 * 109.47039 * 119.99942 * 2 1 3 26 26 H 1.08998 * 109.46754 * 239.99902 * 2 1 3 27 27 H 0.97002 * 119.99905 * 180.02562 * 7 6 4 28 28 H 1.08007 * 120.01983 * 0.02562 * 15 14 12 29 29 H 1.07992 * 119.89124 * 180.25170 * 16 15 14 30 30 H 1.08002 * 119.87533 * 179.73563 * 17 16 15 31 31 H 0.96692 * 114.00252 * 269.97703 * 19 18 17 32 32 H 1.08994 * 109.47780 * 274.62275 * 21 20 18 33 33 H 1.09002 * 109.47292 * 34.62722 * 21 20 18 34 34 H 1.09001 * 109.47253 * 154.62212 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1053 2.0764 1.1759 5 1 2.5907 3.0409 1.1984 6 6 1.5688 1.5407 2.3415 7 7 1.0067 0.3535 2.3207 8 14 1.6470 2.5093 3.9368 9 1 2.3261 3.8076 3.6948 10 1 0.2699 2.7556 4.4345 11 1 2.4081 1.7344 4.9495 12 6 2.3819 1.9675 -1.1579 13 8 2.8669 3.0824 -1.1487 14 6 2.1913 1.2553 -2.4382 15 6 2.8303 0.0338 -2.6628 16 6 2.6455 -0.6309 -3.8573 17 6 1.8375 -0.0866 -4.8389 18 6 1.2027 1.1298 -4.6272 19 8 0.4102 1.6599 -5.5958 20 6 1.3764 1.8033 -3.4298 21 6 0.6877 3.1234 -3.1982 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 0.6321 -0.0200 3.1338 28 1 3.4650 -0.3924 -1.8998 29 1 3.1369 -1.5773 -4.0282 30 1 1.7000 -0.6095 -5.7738 31 1 0.8782 2.2366 -6.2150 32 1 1.2960 3.9281 -3.6110 33 1 -0.2861 3.1161 -3.6880 34 1 0.5547 3.2810 -2.1278 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125605396.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:37 Heat of formation + Delta-G solvation = -32.223739 kcal Electronic energy + Delta-G solvation = -18665.148625 eV Core-core repulsion = 15757.208195 eV Total energy + Delta-G solvation = -2907.940430 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.90168 -38.24428 -36.13313 -35.17768 -32.20079 -31.77311 -29.75817 -29.31025 -26.61609 -25.09998 -23.06245 -21.83441 -21.31382 -19.40269 -17.85090 -16.88583 -16.08971 -15.71446 -15.51382 -14.84186 -14.25267 -14.12450 -13.45244 -13.24648 -12.82035 -12.75334 -12.66579 -11.98870 -11.93792 -11.61428 -11.50377 -11.22561 -11.11613 -10.92857 -10.66414 -10.37174 -10.32104 -10.08597 -9.95109 -8.88334 -8.56643 -8.25211 -8.20463 -7.73397 -6.23895 -3.86709 1.46618 1.59285 3.10740 3.22263 3.29243 3.63723 4.00932 4.15029 4.41812 4.87309 5.08897 5.20081 5.23591 5.40277 5.60717 5.75526 6.03701 6.06655 6.14596 6.22203 6.32249 6.60787 6.62213 6.70782 6.72637 6.81570 6.91116 6.95011 7.07975 7.37157 7.58457 7.80089 7.84043 8.04835 8.48990 9.12232 9.39032 9.93217 10.60915 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.033889 B = 0.006988 C = 0.006575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.038188 B = 4006.080061 C = 4257.689565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.110 3.890 3 N -0.429 5.429 4 C -0.292 4.292 5 H 0.106 0.894 6 C 0.022 3.978 7 N -0.873 5.873 8 Si 0.933 3.067 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.473 3.527 13 O -0.589 6.589 14 C -0.068 4.068 15 C -0.103 4.103 16 C -0.117 4.117 17 C -0.144 4.144 18 C 0.092 3.908 19 O -0.497 6.497 20 C -0.075 4.075 21 C -0.107 4.107 22 H 0.034 0.966 23 H 0.090 0.910 24 H 0.014 0.986 25 H 0.118 0.882 26 H 0.038 0.962 27 H 0.265 0.735 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.384 0.616 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.141 -3.039 -9.542 10.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.013 4.013 3 N -0.145 5.145 4 C -0.420 4.420 5 H 0.124 0.876 6 C -0.180 4.180 7 N -0.514 5.514 8 Si 0.760 3.240 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.207 1.207 12 C 0.262 3.738 13 O -0.476 6.476 14 C -0.071 4.071 15 C -0.121 4.121 16 C -0.135 4.135 17 C -0.163 4.163 18 C 0.048 3.952 19 O -0.306 6.306 20 C -0.077 4.077 21 C -0.164 4.164 22 H 0.053 0.947 23 H 0.109 0.891 24 H 0.033 0.967 25 H 0.135 0.865 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.146 0.854 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.238 0.762 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.451 -2.941 -9.039 9.516 hybrid contribution 0.227 0.371 0.468 0.638 sum -0.225 -2.570 -8.572 8.951 Atomic orbital electron populations 1.22175 0.96758 0.99508 1.01154 1.22008 0.94969 0.83036 1.01308 1.43814 1.53508 1.12032 1.05155 1.19911 1.34275 1.03451 0.84348 0.87635 1.25336 0.96213 0.96577 0.99835 1.70158 1.37784 1.15536 1.27970 0.85741 0.78015 0.79600 0.80693 1.19257 1.20642 1.20689 1.17760 0.86381 0.86709 0.82985 1.90614 1.49967 1.20422 1.86583 1.20086 0.96796 0.94702 0.95537 1.21318 0.99563 0.94052 0.97211 1.20853 0.99249 0.99995 0.93410 1.21320 0.98283 0.96496 1.00202 1.18112 0.94557 0.93540 0.88983 1.84797 1.36592 1.66980 1.42207 1.20189 0.97026 0.97290 0.93195 1.20646 0.99133 0.93048 1.03566 0.94743 0.89114 0.96697 0.86490 0.94387 0.92366 0.85417 0.85730 0.85870 0.76164 0.91241 0.91646 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.45 37.16 0.35 -2.75 16 2 C 0.11 2.53 5.27 -4.04 -0.02 2.50 16 3 N -0.43 -11.03 2.63 -115.93 -0.31 -11.34 16 4 C -0.29 -7.98 9.51 -15.00 -0.14 -8.12 16 5 H 0.11 3.04 7.18 -52.49 -0.38 2.66 16 6 C 0.02 0.55 5.25 -17.45 -0.09 0.46 16 7 N -0.87 -21.77 7.18 55.50 0.40 -21.37 16 8 Si 0.93 20.29 29.55 -169.99 -5.02 15.26 16 9 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 C 0.47 11.92 5.79 -12.37 -0.07 11.85 16 13 O -0.59 -16.61 16.00 5.29 0.08 -16.53 16 14 C -0.07 -1.42 4.94 -104.98 -0.52 -1.94 16 15 C -0.10 -1.83 7.55 -39.15 -0.30 -2.13 16 16 C -0.12 -1.72 10.03 -39.66 -0.40 -2.12 16 17 C -0.14 -2.09 9.98 -39.34 -0.39 -2.48 16 18 C 0.09 1.49 6.67 -39.28 -0.26 1.23 16 19 O -0.50 -6.82 12.63 -19.46 -0.25 -7.07 16 20 C -0.08 -1.44 5.93 -104.04 -0.62 -2.06 16 21 C -0.11 -1.98 9.10 36.00 0.33 -1.65 16 22 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.09 2.25 5.86 -51.93 -0.30 1.94 16 24 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.12 2.87 5.89 -51.93 -0.31 2.57 16 26 H 0.04 0.79 4.26 -51.93 -0.22 0.57 16 27 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 28 H 0.13 2.20 7.42 -52.48 -0.39 1.81 16 29 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.38 3.38 9.06 45.56 0.41 3.79 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.07 7.68 -51.93 -0.40 0.67 16 34 H 0.07 1.61 6.74 -51.93 -0.35 1.26 16 LS Contribution 281.73 15.07 4.25 4.25 Total: -1.00 -30.44 281.73 -6.16 -36.60 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -3.18 Total: 7.39 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -2.13 Total: -7.20 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.09 Total: -32.71 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.16 Total: -23.60 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.44 -6.16 -36.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125605396.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.380 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds