Wall clock time and date at job start Mon Mar 30 2020 03:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.46938 * 2 1 4 4 C 1.36876 * 120.00254 * 82.74788 * 3 2 1 5 5 H 1.08002 * 120.00489 * 171.52042 * 4 3 2 6 6 C 1.39047 * 119.99675 * 351.51911 * 4 3 2 7 7 N 1.31366 * 119.99869 * 1.62883 * 6 4 3 8 8 Si 1.86801 * 120.00039 * 181.63238 * 6 4 3 9 9 H 1.48504 * 109.47019 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47445 * 120.00005 * 8 6 4 11 11 H 1.48504 * 109.47022 * 239.99840 * 8 6 4 12 12 C 1.34781 * 120.00239 * 262.74378 * 3 2 1 13 13 O 1.21585 * 120.00166 * 184.69098 * 12 3 2 14 14 C 1.47742 * 119.99654 * 4.68637 * 12 3 2 15 15 C 1.39673 * 120.12539 * 299.57872 * 14 12 3 16 16 C 1.37945 * 119.95784 * 179.73741 * 15 14 12 17 17 C 1.38305 * 120.21184 * 0.51962 * 16 15 14 18 18 C 1.38825 * 120.25186 * 359.75803 * 17 16 15 19 19 O 1.35910 * 119.98133 * 179.97438 * 18 17 16 20 20 C 1.38475 * 120.03989 * 359.97438 * 18 17 16 21 21 C 1.50694 * 120.10936 * 180.02562 * 20 18 17 22 22 H 1.09002 * 109.47411 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47238 * 299.99892 * 1 2 3 24 24 H 1.09001 * 109.47207 * 59.99679 * 1 2 3 25 25 H 1.08994 * 109.47039 * 119.99942 * 2 1 3 26 26 H 1.08998 * 109.46754 * 239.99902 * 2 1 3 27 27 H 0.97002 * 119.99905 * 180.02562 * 7 6 4 28 28 H 1.08007 * 120.01983 * 0.02562 * 15 14 12 29 29 H 1.07992 * 119.89124 * 180.25170 * 16 15 14 30 30 H 1.08002 * 119.87533 * 179.73563 * 17 16 15 31 31 H 0.96692 * 114.00252 * 269.97703 * 19 18 17 32 32 H 1.08994 * 109.47780 * 274.62275 * 21 20 18 33 33 H 1.09002 * 109.47292 * 34.62722 * 21 20 18 34 34 H 1.09001 * 109.47253 * 154.62212 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1053 2.0764 1.1759 5 1 2.5907 3.0409 1.1984 6 6 1.5688 1.5407 2.3415 7 7 1.0067 0.3535 2.3207 8 14 1.6470 2.5093 3.9368 9 1 2.3261 3.8076 3.6948 10 1 0.2699 2.7556 4.4345 11 1 2.4081 1.7344 4.9495 12 6 2.3819 1.9675 -1.1579 13 8 2.8669 3.0824 -1.1487 14 6 2.1913 1.2553 -2.4382 15 6 2.8303 0.0338 -2.6628 16 6 2.6455 -0.6309 -3.8573 17 6 1.8375 -0.0866 -4.8389 18 6 1.2027 1.1298 -4.6272 19 8 0.4102 1.6599 -5.5958 20 6 1.3764 1.8033 -3.4298 21 6 0.6877 3.1234 -3.1982 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 0.6321 -0.0200 3.1338 28 1 3.4650 -0.3924 -1.8998 29 1 3.1369 -1.5773 -4.0282 30 1 1.7000 -0.6095 -5.7738 31 1 0.8782 2.2366 -6.2150 32 1 1.2960 3.9281 -3.6110 33 1 -0.2861 3.1161 -3.6880 34 1 0.5547 3.2810 -2.1278 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125605396.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:37 Heat of formation + Delta-G solvation = -52.580589 kcal Electronic energy + Delta-G solvation = -18666.031364 eV Core-core repulsion = 15757.208195 eV Total energy + Delta-G solvation = -2908.823169 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.39095 -39.84582 -37.42020 -37.11562 -33.74754 -33.54691 -31.37918 -30.96933 -28.03852 -26.95423 -24.66115 -23.57768 -22.67687 -20.97464 -19.27796 -18.80849 -17.74832 -17.10460 -16.88193 -16.49074 -15.93727 -15.69895 -15.20545 -14.78825 -14.65212 -14.22455 -14.16200 -13.63317 -13.44487 -13.24637 -13.01359 -12.89759 -12.67338 -12.64366 -12.35501 -12.17550 -12.00803 -11.75891 -11.57711 -10.81507 -10.41754 -9.81136 -9.63256 -9.44690 -8.19431 -5.92032 0.13916 0.30752 1.35055 1.41151 1.54151 1.94816 2.24561 2.65303 2.96399 3.15351 3.38994 3.84004 3.89376 4.09299 4.14266 4.49862 4.52420 4.65821 4.72883 4.78099 4.83166 4.91888 4.98220 5.12616 5.20686 5.36626 5.38403 5.43015 5.53910 5.62036 5.86051 5.90310 6.06957 6.52188 6.87663 7.13083 7.44578 7.98948 8.63228 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.033889 B = 0.006988 C = 0.006575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.038188 B = 4006.080061 C = 4257.689565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.114 3.886 3 N -0.440 5.440 4 C -0.339 4.339 5 H 0.074 0.926 6 C -0.002 4.002 7 N -0.873 5.873 8 Si 0.993 3.007 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.266 1.266 12 C 0.466 3.534 13 O -0.637 6.637 14 C -0.100 4.100 15 C -0.116 4.116 16 C -0.099 4.099 17 C -0.129 4.129 18 C 0.103 3.897 19 O -0.498 6.498 20 C -0.101 4.101 21 C -0.099 4.099 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.009 0.991 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.273 0.727 28 H 0.126 0.874 29 H 0.168 0.832 30 H 0.164 0.836 31 H 0.408 0.592 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.652 -5.246 -11.325 12.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.008 4.008 3 N -0.156 5.156 4 C -0.467 4.467 5 H 0.092 0.908 6 C -0.204 4.204 7 N -0.513 5.513 8 Si 0.817 3.183 9 H -0.205 1.205 10 H -0.196 1.196 11 H -0.191 1.191 12 C 0.256 3.744 13 O -0.527 6.527 14 C -0.103 4.103 15 C -0.134 4.134 16 C -0.117 4.117 17 C -0.147 4.147 18 C 0.058 3.942 19 O -0.311 6.311 20 C -0.103 4.103 21 C -0.156 4.156 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.028 0.972 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.144 0.856 29 H 0.185 0.815 30 H 0.182 0.818 31 H 0.267 0.733 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.975 -5.184 -10.841 12.056 hybrid contribution 0.359 1.025 0.901 1.412 sum -0.616 -4.159 -9.939 10.792 Atomic orbital electron populations 1.22007 0.96283 1.00546 0.99540 1.21999 0.95251 0.81832 1.01743 1.43999 1.53589 1.12906 1.05070 1.19781 1.37141 1.03466 0.86309 0.90752 1.25992 0.95093 0.97446 1.01831 1.70240 1.36459 1.15630 1.28958 0.84872 0.78306 0.77919 0.77197 1.20491 1.19603 1.19143 1.18522 0.85008 0.86455 0.84436 1.90544 1.51832 1.22657 1.87634 1.19824 0.99924 0.96502 0.94030 1.21397 0.99729 0.93283 0.99025 1.21278 0.98178 1.00747 0.91474 1.21777 0.96251 0.95317 1.01403 1.18133 0.93957 0.93845 0.88268 1.84737 1.36812 1.67551 1.41972 1.20329 0.97832 0.97677 0.94438 1.20530 1.00384 0.93803 1.00847 0.92195 0.91669 0.97213 0.88039 0.91854 0.91640 0.85589 0.81468 0.81805 0.73316 0.90837 0.89685 0.94953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 9.45 71.98 0.68 -4.97 16 2 C 0.11 5.32 5.27 86.38 0.46 5.77 16 3 N -0.44 -23.73 2.63 -638.94 -1.68 -25.41 16 4 C -0.34 -19.60 9.51 84.10 0.80 -18.80 16 5 H 0.07 4.64 7.18 -2.91 -0.02 4.62 16 6 C 0.00 -0.12 5.25 84.96 0.45 0.32 16 7 N -0.87 -43.80 7.18 21.68 0.16 -43.65 16 8 Si 0.99 42.34 29.55 68.60 2.03 44.37 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 11 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 12 C 0.47 24.77 5.79 86.76 0.50 25.27 16 13 O -0.64 -38.55 16.00 -3.98 -0.06 -38.61 16 14 C -0.10 -4.22 4.94 -20.10 -0.10 -4.32 16 15 C -0.12 -3.96 7.55 22.55 0.17 -3.79 16 16 C -0.10 -2.48 10.03 22.22 0.22 -2.25 16 17 C -0.13 -3.08 9.98 22.43 0.22 -2.86 16 18 C 0.10 2.99 6.67 22.47 0.15 3.14 16 19 O -0.50 -11.80 12.63 -92.53 -1.17 -12.97 16 20 C -0.10 -3.81 5.93 -19.49 -0.12 -3.93 16 21 C -0.10 -3.76 9.10 71.23 0.65 -3.11 16 22 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.06 3.27 5.86 -2.39 -0.01 3.25 16 24 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.10 5.04 5.89 -2.39 -0.01 5.03 16 26 H 0.06 2.61 4.26 -2.39 -0.01 2.60 16 27 H 0.27 12.73 8.31 -92.71 -0.77 11.96 16 28 H 0.13 4.25 7.42 -2.91 -0.02 4.23 16 29 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 30 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.41 5.56 9.06 -74.06 -0.67 4.89 16 32 H 0.07 2.62 8.14 -2.39 -0.02 2.61 16 33 H 0.08 2.77 7.68 -2.39 -0.02 2.75 16 34 H 0.03 1.47 6.74 -2.39 -0.02 1.45 16 Total: -1.00 -70.19 281.73 3.81 -66.38 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.46 Total: 19.41 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 4.08 Total: -9.52 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -1.53 Total: -69.06 kcal Atomic # 8 Polarization: -50.35 SS G_CDS: -1.23 Total: -51.58 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -70.19 3.81 -66.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125605396.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.796 kcal (2) G-P(sol) polarization free energy of solvation -70.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds