Wall clock time and date at job start Mon Mar 30 2020 03:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35979 * 117.00422 * 2 1 4 4 C 1.38706 * 119.99578 * 359.97438 * 3 2 1 5 5 C 1.38154 * 119.96757 * 179.97438 * 4 3 2 6 6 C 1.38759 * 120.27631 * 0.02562 * 5 4 3 7 7 C 1.38967 * 119.96674 * 0.15953 * 6 5 4 8 8 C 1.38478 * 120.00204 * 180.02562 * 3 2 1 9 9 N 1.39844 * 121.87175 * 179.69025 * 7 6 5 10 10 C 1.46894 * 111.00460 * 144.87833 * 9 7 6 11 11 C 1.46751 * 112.14323 * 20.07936 * 9 7 6 12 12 H 1.09007 * 109.61049 * 69.64809 * 11 9 7 13 13 C 1.50699 * 109.61646 * 189.99927 * 11 9 7 14 14 H 1.08004 * 119.99957 * 0.02562 * 13 11 9 15 15 C 1.37878 * 120.00182 * 180.02562 * 13 11 9 16 16 N 1.31509 * 120.00228 * 180.02562 * 15 13 11 17 17 Si 1.86803 * 119.99816 * 359.97438 * 15 13 11 18 18 H 1.48501 * 109.47270 * 270.00217 * 17 15 13 19 19 H 1.48498 * 109.47276 * 30.00117 * 17 15 13 20 20 H 1.48499 * 109.46942 * 150.00317 * 17 15 13 21 21 C 1.53414 * 108.60886 * 309.73782 * 11 9 7 22 22 O 1.36250 * 118.68279 * 180.44484 * 6 5 4 23 23 H 1.09005 * 109.47193 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47388 * 300.00539 * 1 2 3 25 25 H 1.09001 * 109.46462 * 60.00362 * 1 2 3 26 26 H 1.08001 * 120.02021 * 359.95400 * 4 3 2 27 27 H 1.07994 * 119.86655 * 180.02562 * 5 4 3 28 28 H 1.07997 * 119.90079 * 359.97438 * 8 3 2 29 29 H 1.09007 * 109.47136 * 301.67857 * 10 9 7 30 30 H 1.09001 * 109.47284 * 61.66920 * 10 9 7 31 31 H 1.08995 * 109.47786 * 181.67398 * 10 9 7 32 32 H 0.97001 * 120.00553 * 179.97438 * 16 15 13 33 33 H 1.08998 * 109.78330 * 182.85297 * 21 11 9 34 34 H 1.09005 * 109.77725 * 303.65575 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2909 2.3748 -0.0005 5 6 1.9188 3.6054 0.0000 6 6 3.3042 3.6839 0.0005 7 6 4.0654 2.5213 -0.0028 8 6 3.4293 1.2840 -0.0005 9 7 5.4634 2.5539 -0.0088 10 6 6.0194 1.4449 0.7777 11 6 5.9886 3.8432 0.4557 12 1 5.7977 3.9527 1.5233 13 6 7.4719 3.9077 0.1978 14 1 7.9762 3.0730 -0.2664 15 6 8.1853 5.0324 0.5543 16 7 9.4797 5.0890 0.3288 17 14 7.3130 6.4765 1.3564 18 1 6.8387 7.4135 0.3066 19 1 6.1521 5.9810 2.1387 20 1 8.2548 7.1828 2.2616 21 6 5.2824 4.9659 -0.3154 22 8 3.8895 4.9143 0.0103 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 0.2124 2.3187 -0.0017 27 1 1.3291 4.5101 0.0000 28 1 4.0159 0.3772 -0.0005 29 1 5.6487 1.5035 1.8011 30 1 5.7145 0.4967 0.3348 31 1 7.1073 1.5112 0.7809 32 1 9.9816 5.8804 0.5793 33 1 5.6944 5.9311 -0.0212 34 1 5.4163 4.8181 -1.3870 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213621889.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:06 Heat of formation + Delta-G solvation = -45.800282 kcal Electronic energy + Delta-G solvation = -18500.664643 eV Core-core repulsion = 15592.135490 eV Total energy + Delta-G solvation = -2908.529153 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.06959 -40.26848 -37.85868 -37.26779 -34.88420 -32.09707 -31.30306 -29.71415 -28.16678 -27.33159 -25.90453 -23.87789 -23.05232 -21.06677 -19.53870 -18.96777 -18.46883 -18.17577 -16.65526 -16.58420 -16.40628 -15.97662 -15.57769 -15.48413 -15.29581 -14.96784 -14.64470 -14.33516 -13.84093 -13.38653 -13.19642 -13.12649 -12.86405 -12.67511 -12.38464 -12.25203 -11.81083 -11.73552 -11.49716 -11.30798 -10.83772 -10.66979 -9.18120 -8.43010 -8.39246 -6.50031 0.30211 0.46485 1.20712 1.29034 1.36861 2.17095 2.31997 2.33512 2.69875 2.86272 3.03694 3.66092 3.95582 3.99857 4.11142 4.18213 4.25594 4.45854 4.46481 4.49288 4.50153 4.52531 4.73545 4.81474 4.86970 4.96078 4.99651 5.14849 5.24605 5.33189 5.48036 5.82255 6.05499 6.31787 6.43942 6.56171 6.58769 7.13956 8.72748 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.040811 B = 0.006661 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.927757 B = 4202.323563 C = 4733.723071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.123 3.877 4 C -0.199 4.199 5 C -0.083 4.083 6 C 0.014 3.986 7 C 0.077 3.923 8 C -0.179 4.179 9 N -0.492 5.492 10 C 0.040 3.960 11 C 0.164 3.836 12 H 0.011 0.989 13 C -0.516 4.516 14 H 0.055 0.945 15 C 0.032 3.968 16 N -0.928 5.928 17 Si 0.923 3.077 18 H -0.253 1.253 19 H -0.258 1.258 20 H -0.280 1.280 21 C 0.057 3.943 22 O -0.335 6.335 23 H 0.119 0.881 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.168 0.832 27 H 0.153 0.847 28 H 0.140 0.860 29 H 0.034 0.966 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.273 0.727 33 H 0.094 0.906 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.699 -6.067 0.884 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.077 3.923 4 C -0.219 4.219 5 C -0.102 4.102 6 C -0.033 4.033 7 C -0.023 4.023 8 C -0.201 4.201 9 N -0.206 5.206 10 C -0.105 4.105 11 C 0.057 3.943 12 H 0.029 0.971 13 C -0.554 4.554 14 H 0.073 0.927 15 C -0.169 4.169 16 N -0.566 5.566 17 Si 0.748 3.252 18 H -0.179 1.179 19 H -0.182 1.182 20 H -0.206 1.206 21 C -0.019 4.019 22 O -0.250 6.250 23 H 0.137 0.863 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.186 0.814 27 H 0.171 0.829 28 H 0.158 0.842 29 H 0.053 0.947 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.264 -6.034 0.478 19.241 hybrid contribution 0.349 0.922 0.796 1.267 sum -17.915 -5.112 1.274 18.674 Atomic orbital electron populations 1.23371 0.76272 1.05574 1.02470 1.86042 1.23600 1.26148 1.88924 1.18632 0.91281 0.85115 0.97240 1.21172 1.01246 0.90022 1.09429 1.20472 0.89755 0.99521 1.00489 1.19080 0.93367 0.83133 1.07673 1.19090 0.88916 0.93479 1.00833 1.20072 0.92669 0.96140 1.11187 1.58427 1.03236 1.06142 1.52771 1.22408 1.00983 0.92507 0.94630 1.20128 0.95163 0.85946 0.93105 0.97143 1.20818 0.90096 1.03439 1.41081 0.92709 1.25593 0.95289 1.00639 0.95336 1.69953 1.08037 1.30648 1.47945 0.86242 0.78905 0.80284 0.79771 1.17877 1.18211 1.20619 1.23632 0.77661 1.00215 1.00345 1.86098 1.25530 1.26851 1.86542 0.86299 0.91514 0.91508 0.81446 0.82948 0.84203 0.94726 0.89011 0.91016 0.91715 0.88872 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.13 10.50 -93.32 -0.98 -9.11 16 3 C 0.12 3.52 6.68 22.44 0.15 3.67 16 4 C -0.20 -5.00 9.03 22.36 0.20 -4.79 16 5 C -0.08 -2.50 9.93 22.37 0.22 -2.28 16 6 C 0.01 0.55 6.47 22.57 0.15 0.70 16 7 C 0.08 3.07 5.82 38.25 0.22 3.29 16 8 C -0.18 -6.06 9.00 22.54 0.20 -5.86 16 9 N -0.49 -21.84 4.63 -699.37 -3.24 -25.08 16 10 C 0.04 1.55 8.74 127.69 1.12 2.66 16 11 C 0.16 8.03 1.46 44.34 0.06 8.09 16 12 H 0.01 0.57 7.17 -2.38 -0.02 0.55 16 13 C -0.52 -28.85 8.44 25.60 0.22 -28.63 16 14 H 0.05 3.37 7.34 -2.91 -0.02 3.35 16 15 C 0.03 1.79 5.45 84.66 0.46 2.25 16 16 N -0.93 -55.30 13.96 21.45 0.30 -55.00 16 17 Si 0.92 42.75 24.44 68.60 1.68 44.43 16 18 H -0.25 -10.99 6.84 99.48 0.68 -10.31 16 19 H -0.26 -11.74 6.53 99.48 0.65 -11.09 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 21 C 0.06 2.61 6.04 72.12 0.44 3.05 16 22 O -0.33 -14.40 10.41 -96.40 -1.00 -15.40 16 23 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 25 H 0.07 0.76 7.66 -2.39 -0.02 0.75 16 26 H 0.17 2.79 6.29 -2.91 -0.02 2.77 16 27 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 28 H 0.14 4.44 6.06 -2.91 -0.02 4.42 16 29 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.09 2.96 6.27 -2.39 -0.01 2.94 16 31 H 0.07 3.03 6.64 -2.39 -0.02 3.01 16 32 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 33 H 0.09 4.26 3.41 -2.39 -0.01 4.25 16 34 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 Total: -1.00 -65.99 270.59 2.34 -63.65 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 1.04 Total: 13.01 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 4.55 Total: -16.50 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -2.94 Total: -80.08 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -1.98 Total: -24.51 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.68 Total: 44.43 kcal Total: -65.99 2.34 -63.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213621889.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.848 kcal (2) G-P(sol) polarization free energy of solvation -65.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds