Wall clock time and date at job start Mon Mar 30 2020 04:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 111.00245 * 2 1 4 4 H 1.09001 * 109.47676 * 182.72521 * 3 2 1 5 5 C 1.53008 * 109.46735 * 302.72168 * 3 2 1 6 6 C 1.50697 * 109.47182 * 295.00131 * 5 3 2 7 7 H 1.08001 * 119.99892 * 359.97438 * 6 5 3 8 8 C 1.37881 * 120.00166 * 180.02562 * 6 5 3 9 9 N 1.31514 * 119.99596 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00101 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47153 * 60.00074 * 10 8 6 12 12 H 1.48497 * 109.47005 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47108 * 299.99641 * 10 8 6 14 14 C 1.50697 * 109.47440 * 62.72091 * 3 2 1 15 15 C 1.38253 * 119.92628 * 40.54831 * 14 3 2 16 16 C 1.38237 * 120.13982 * 179.68891 * 15 14 3 17 17 C 1.38539 * 120.03068 * 0.59686 * 16 15 14 18 18 C 1.39272 * 119.83094 * 359.68144 * 17 16 15 19 19 C 1.38238 * 119.92940 * 220.82530 * 14 3 2 20 20 O 1.36497 * 108.64006 * 179.97438 * 18 17 16 21 21 C 1.43986 * 105.49034 * 342.72022 * 20 18 17 22 22 O 1.36504 * 131.53655 * 179.68195 * 17 16 15 23 23 H 1.08992 * 109.46911 * 186.63995 * 1 2 3 24 24 H 1.09007 * 109.46847 * 306.64209 * 1 2 3 25 25 H 1.08997 * 109.46933 * 66.63333 * 1 2 3 26 26 H 1.00894 * 111.00300 * 236.04273 * 2 1 3 27 27 H 1.09002 * 109.46953 * 54.99906 * 5 3 2 28 28 H 1.08998 * 109.46940 * 174.99997 * 5 3 2 29 29 H 0.97003 * 119.99934 * 180.02562 * 9 8 6 30 30 H 1.07995 * 119.92793 * 359.97438 * 15 14 3 31 31 H 1.07998 * 119.98567 * 180.27263 * 16 15 14 32 32 H 1.08003 * 119.98601 * 359.97438 * 19 14 3 33 33 H 1.08999 * 110.57195 * 268.56333 * 21 20 18 34 34 H 1.09002 * 110.57271 * 145.68270 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 3.0841 1.3428 -0.0489 5 6 1.4503 2.1270 -1.2137 6 6 1.9787 1.4970 -2.4765 7 1 2.6379 0.6434 -2.4193 8 6 1.6215 2.0110 -3.7051 9 7 0.8192 3.0507 -3.7748 10 14 2.2771 1.2305 -5.2705 11 1 1.8435 -0.1883 -5.3354 12 1 1.7478 1.9637 -6.4484 13 1 3.7607 1.2953 -5.2721 14 6 1.5677 2.0738 1.2627 15 6 1.5806 1.3957 2.4675 16 6 1.1952 2.0376 3.6295 17 6 0.7829 3.3596 3.5873 18 6 0.7643 4.0410 2.3728 19 6 1.1576 3.3931 1.2131 20 8 0.3241 5.3141 2.5936 21 6 -0.3135 5.2821 3.8842 22 8 0.3549 4.2060 4.5689 23 1 -0.3633 -1.0207 0.1188 24 1 -0.3633 0.6134 0.8246 25 1 -0.3633 0.4076 -0.9434 26 1 1.8306 -0.5261 -0.7813 27 1 0.3613 2.0794 -1.2121 28 1 1.7686 3.1684 -1.1664 29 1 0.5676 3.4121 -4.6391 30 1 1.8970 0.3637 2.5015 31 1 1.2105 1.5068 4.5699 32 1 1.1446 3.9191 0.2699 33 1 -1.3773 5.0684 3.7806 34 1 -0.1605 6.2244 4.4104 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259131752.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:43 Heat of formation + Delta-G solvation = -34.556207 kcal Electronic energy + Delta-G solvation = -18147.462094 eV Core-core repulsion = 15239.420520 eV Total energy + Delta-G solvation = -2908.041573 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.89573 -38.52472 -36.05884 -35.59070 -32.67453 -30.81052 -29.72259 -28.40077 -26.01008 -25.15710 -23.82855 -22.71545 -21.99743 -19.61377 -17.63739 -17.16423 -17.07108 -16.39402 -15.83468 -15.35376 -14.62381 -14.27976 -14.03916 -13.68725 -13.52704 -13.07775 -12.77053 -12.69077 -12.53077 -12.08973 -11.87051 -11.34433 -11.03883 -10.96219 -10.88127 -10.64385 -10.43726 -10.06804 -9.76478 -9.17902 -8.47219 -8.44253 -7.68523 -7.56895 -6.09626 -4.13586 1.49286 1.59454 2.97811 3.27475 3.32986 3.34550 3.63205 3.96902 4.37563 4.75992 4.79937 4.93280 5.10203 5.28356 5.36611 5.40967 5.58191 5.69655 5.88921 6.04545 6.24253 6.34677 6.41729 6.48165 6.57634 6.62439 6.67224 6.78412 7.04826 7.34907 7.45549 7.58503 7.78521 7.90916 8.14298 8.28903 8.92213 9.51451 11.01199 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032186 B = 0.005818 C = 0.005168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.736092 B = 4811.729233 C = 5416.181521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.680 5.680 3 C 0.122 3.878 4 H 0.086 0.914 5 C -0.008 4.008 6 C -0.525 4.525 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.891 5.891 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C -0.050 4.050 15 C -0.092 4.092 16 C -0.109 4.109 17 C 0.011 3.989 18 C 0.024 3.976 19 C -0.093 4.093 20 O -0.311 6.311 21 C 0.214 3.786 22 O -0.316 6.316 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.348 0.652 27 H 0.026 0.974 28 H 0.024 0.976 29 H 0.262 0.738 30 H 0.144 0.856 31 H 0.128 0.872 32 H 0.147 0.853 33 H 0.078 0.922 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 -0.417 13.008 13.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.310 5.310 3 C 0.013 3.987 4 H 0.104 0.896 5 C -0.046 4.046 6 C -0.564 4.564 7 H 0.074 0.926 8 C -0.141 4.141 9 N -0.529 5.529 10 Si 0.720 3.280 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.050 4.050 15 C -0.110 4.110 16 C -0.128 4.128 17 C -0.032 4.032 18 C -0.019 4.019 19 C -0.112 4.112 20 O -0.227 6.227 21 C 0.101 3.899 22 O -0.233 6.233 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.166 0.834 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.161 0.839 31 H 0.145 0.855 32 H 0.165 0.835 33 H 0.096 0.904 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.634 -0.176 13.670 13.768 hybrid contribution -0.132 0.265 -1.770 1.794 sum -1.766 0.089 11.900 12.031 Atomic orbital electron populations 1.22133 0.89254 1.00140 1.00964 1.60774 1.07523 1.13458 1.49278 1.20594 0.98992 0.88157 0.90967 0.89600 1.19855 0.97243 0.96154 0.91385 1.21088 1.29460 1.14943 0.90861 0.92608 1.24993 0.94979 0.94914 0.99212 1.69949 1.34662 1.23195 1.25142 0.86657 0.79313 0.79355 0.82683 1.20228 1.21348 1.20182 1.19945 0.96755 0.92271 0.96077 1.20900 0.99296 1.00531 0.90283 1.20040 1.03336 0.89689 0.99712 1.19786 1.04724 0.93007 0.85716 1.19783 1.03719 0.83378 0.95069 1.20421 1.00360 0.94362 0.96064 1.87352 1.73028 1.25866 1.36504 1.25511 0.94959 0.91574 0.77821 1.87292 1.72323 1.33530 1.30168 0.93039 0.92795 0.94214 0.83352 0.95564 0.95791 0.92833 0.83876 0.85454 0.83533 0.90415 0.85743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.78 60.07 0.59 1.03 16 2 N -0.68 -12.12 6.03 -115.24 -0.69 -12.82 16 3 C 0.12 2.38 2.88 -68.86 -0.20 2.19 16 4 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 5 C -0.01 -0.20 3.31 -27.88 -0.09 -0.29 16 6 C -0.53 -13.74 8.59 -34.44 -0.30 -14.03 16 7 H 0.06 1.40 7.15 -52.49 -0.38 1.02 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 10 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 C -0.05 -0.89 4.34 -104.62 -0.45 -1.34 16 15 C -0.09 -1.43 8.72 -39.58 -0.35 -1.77 16 16 C -0.11 -1.62 10.06 -39.47 -0.40 -2.01 16 17 C 0.01 0.19 7.15 -39.09 -0.28 -0.09 16 18 C 0.02 0.43 7.15 -39.08 -0.28 0.15 16 19 C -0.09 -1.76 9.12 -39.47 -0.36 -2.12 16 20 O -0.31 -5.16 11.40 -45.68 -0.52 -5.68 16 21 C 0.21 2.63 8.89 101.05 0.90 3.52 16 22 O -0.32 -4.72 11.40 -45.70 -0.52 -5.25 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.94 6.59 -51.93 -0.34 0.60 16 25 H 0.04 0.80 6.54 -51.93 -0.34 0.46 16 26 H 0.35 6.33 7.81 -39.29 -0.31 6.03 16 27 H 0.03 0.68 6.24 -51.93 -0.32 0.35 16 28 H 0.02 0.62 6.37 -51.93 -0.33 0.29 16 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.14 2.05 7.73 -52.49 -0.41 1.64 16 31 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.15 3.00 5.84 -52.48 -0.31 2.69 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 281.61 15.07 4.24 4.24 Total: -1.00 -29.36 281.61 -7.07 -36.42 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -3.98 Total: 5.48 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -1.31 Total: -13.20 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.04 Total: -37.87 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -1.04 Total: -10.93 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.36 -7.07 -36.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259131752.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.868 kcal (2) G-P(sol) polarization free energy of solvation -29.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds