Wall clock time and date at job start Mon Mar 30 2020 04:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35899 * 116.99959 * 2 1 4 4 C 1.38728 * 120.05434 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94652 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.05389 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94527 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.46811 * 355.56292 * 7 6 5 9 9 C 1.50704 * 109.47271 * 115.56486 * 7 6 5 10 10 H 1.07995 * 119.99862 * 94.69094 * 9 7 6 11 11 C 1.37870 * 119.99660 * 274.69001 * 9 7 6 12 12 N 1.31524 * 119.99674 * 185.12388 * 11 9 7 13 13 Si 1.86805 * 120.00422 * 4.84797 * 11 9 7 14 14 H 1.48499 * 109.46977 * 84.62914 * 13 11 9 15 15 H 1.48497 * 109.47237 * 204.62897 * 13 11 9 16 16 H 1.48495 * 109.46888 * 324.62999 * 13 11 9 17 17 C 1.53002 * 109.47290 * 235.56544 * 7 6 5 18 18 N 1.46495 * 109.47132 * 174.99938 * 17 7 6 19 19 C 1.34775 * 119.99748 * 180.02562 * 18 17 7 20 20 O 1.21286 * 120.00456 * 359.97438 * 19 18 17 21 21 C 1.38273 * 120.11088 * 0.27415 * 6 5 4 22 22 C 1.38145 * 120.05324 * 359.45562 * 21 6 5 23 23 H 1.08994 * 109.46958 * 300.00114 * 1 2 3 24 24 H 1.08999 * 109.46457 * 60.00267 * 1 2 3 25 25 H 1.09002 * 109.47129 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.02842 * 359.95917 * 4 3 2 27 27 H 1.07997 * 119.97306 * 180.02562 * 5 4 3 28 28 H 0.97000 * 119.99666 * 179.72958 * 12 11 9 29 29 H 1.08999 * 109.46902 * 295.00123 * 17 7 6 30 30 H 1.08999 * 109.47383 * 54.99611 * 17 7 6 31 31 H 0.96996 * 120.00486 * 0.02562 * 18 17 7 32 32 H 1.08006 * 120.00241 * 180.02562 * 19 18 17 33 33 H 1.07999 * 119.96841 * 179.70391 * 21 6 5 34 34 H 1.07996 * 120.02648 * 180.27952 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 3.9862 5.0184 -0.0017 8 1 5.0641 4.8770 0.0775 9 6 3.6675 5.7436 -1.2838 10 1 2.8468 6.4447 -1.3180 11 6 4.4238 5.5118 -2.4131 12 7 4.2113 6.2168 -3.5029 13 14 5.7554 4.2019 -2.3929 14 1 5.1518 2.8778 -2.6891 15 1 6.7787 4.5204 -3.4208 16 1 6.3942 4.1660 -1.0529 17 6 3.4914 5.8440 1.1876 18 7 4.2419 7.1003 1.2560 19 6 3.9756 7.9921 2.2308 20 8 3.1145 7.7548 3.0513 21 6 1.9211 3.6047 0.0052 22 6 1.2916 2.3751 0.0001 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 4.0209 0.3799 0.0016 27 1 5.1346 2.5749 0.0000 28 1 4.7460 6.0565 -4.2961 29 1 2.4305 6.0609 1.0631 30 1 3.6414 5.2806 2.1086 31 1 4.9304 7.2904 0.5997 32 1 4.5286 8.9185 2.2811 33 1 1.3344 4.5114 0.0096 34 1 0.2130 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259803544.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:52 Heat of formation + Delta-G solvation = -54.053295 kcal Electronic energy + Delta-G solvation = -17927.027546 eV Core-core repulsion = 15018.140516 eV Total energy + Delta-G solvation = -2908.887030 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.71761 -38.68568 -37.40743 -34.87105 -32.78235 -31.30762 -30.52224 -28.27565 -26.62344 -25.38762 -22.62418 -21.99209 -20.72711 -19.85617 -17.79129 -17.16682 -17.10918 -15.87684 -15.46822 -15.23068 -14.73618 -14.42841 -14.02286 -13.70493 -13.46198 -13.11914 -12.90230 -12.67476 -12.34264 -12.24811 -11.74997 -11.48015 -11.19754 -10.79307 -10.73688 -10.42783 -9.91774 -9.83225 -9.44097 -9.36108 -8.75695 -8.41552 -8.37160 -7.44038 -6.25173 -4.26757 1.90201 2.06236 3.18317 3.23754 3.26050 3.30733 3.58213 4.01772 4.26848 4.38153 5.07486 5.13924 5.26335 5.31960 5.41213 5.51809 5.54096 5.77348 5.88462 5.98707 6.07250 6.19556 6.27853 6.42331 6.58006 6.81568 6.85877 6.95163 7.14822 7.30505 7.42422 7.52674 7.82919 8.12412 8.31521 8.74253 8.79387 9.35506 10.86288 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.016046 B = 0.008502 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.568791 B = 3292.528370 C = 4439.954917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.326 6.326 3 C 0.096 3.904 4 C -0.150 4.150 5 C -0.103 4.103 6 C -0.071 4.071 7 C 0.028 3.972 8 H 0.052 0.948 9 C -0.508 4.508 10 H 0.079 0.921 11 C 0.079 3.921 12 N -0.890 5.890 13 Si 0.866 3.134 14 H -0.267 1.267 15 H -0.291 1.291 16 H -0.262 1.262 17 C 0.137 3.863 18 N -0.712 5.712 19 C 0.483 3.517 20 O -0.578 6.578 21 C -0.066 4.066 22 C -0.205 4.205 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.266 0.734 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.408 0.592 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.214 -6.201 6.129 8.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.240 6.240 3 C 0.052 3.948 4 C -0.169 4.169 5 C -0.121 4.121 6 C -0.072 4.072 7 C 0.009 3.991 8 H 0.070 0.930 9 C -0.545 4.545 10 H 0.097 0.903 11 C -0.124 4.124 12 N -0.526 5.526 13 Si 0.694 3.306 14 H -0.192 1.192 15 H -0.217 1.217 16 H -0.187 1.187 17 C 0.013 3.987 18 N -0.364 5.364 19 C 0.251 3.749 20 O -0.457 6.457 21 C -0.084 4.084 22 C -0.223 4.223 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.111 0.889 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.243 0.757 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.689 -6.517 6.503 9.360 hybrid contribution 0.751 -0.528 -0.781 1.205 sum -0.939 -7.045 5.721 9.124 Atomic orbital electron populations 1.22937 0.79247 1.03068 1.01225 1.85994 1.20719 1.27634 1.89673 1.18856 0.92218 0.83731 1.00021 1.20239 0.91250 0.98132 1.07237 1.20879 0.99451 0.91506 1.00243 1.20454 0.93795 0.96139 0.96835 1.18631 0.96386 0.88968 0.95127 0.93041 1.20858 1.17412 1.23979 0.92276 0.90311 1.25012 0.96857 0.95186 0.95376 1.69892 1.40567 1.39410 1.02773 0.87088 0.82107 0.83471 0.77975 1.19226 1.21724 1.18702 1.21283 0.95918 0.84106 0.97402 1.46496 1.39640 1.19758 1.30495 1.22470 0.84496 0.87518 0.80428 1.90655 1.34783 1.79088 1.41143 1.20765 0.94457 0.96421 0.96736 1.21158 0.99307 0.92614 1.09249 0.92986 0.92915 0.88937 0.86239 0.86419 0.92394 0.92221 0.93491 0.75655 0.86411 0.85821 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.33 -5.18 10.50 -19.42 -0.20 -5.38 16 3 C 0.10 1.70 6.69 -39.22 -0.26 1.44 16 4 C -0.15 -2.72 9.99 -39.43 -0.39 -3.12 16 5 C -0.10 -1.99 8.15 -39.61 -0.32 -2.31 16 6 C -0.07 -1.45 4.30 -104.60 -0.45 -1.90 16 7 C 0.03 0.59 1.62 -92.92 -0.15 0.44 16 8 H 0.05 1.08 5.44 -51.93 -0.28 0.79 16 9 C -0.51 -12.57 8.14 -34.44 -0.28 -12.85 16 10 H 0.08 2.16 8.05 -52.49 -0.42 1.74 16 11 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 12 N -0.89 -25.25 13.96 55.43 0.77 -24.47 16 13 Si 0.87 19.94 24.77 -169.99 -4.21 15.73 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.26 -5.55 5.95 56.52 0.34 -5.21 16 17 C 0.14 2.63 4.72 -4.04 -0.02 2.62 16 18 N -0.71 -12.18 5.35 -64.68 -0.35 -12.53 16 19 C 0.48 7.80 12.64 54.05 0.68 8.49 16 20 O -0.58 -11.90 17.17 5.55 0.10 -11.80 16 21 C -0.07 -1.27 8.93 -39.60 -0.35 -1.62 16 22 C -0.20 -3.57 9.04 -39.43 -0.36 -3.93 16 23 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 24 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 27 H 0.12 2.17 6.76 -52.49 -0.35 1.81 16 28 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.06 1.22 7.33 -51.93 -0.38 0.84 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.41 6.55 8.34 -40.82 -0.34 6.21 16 32 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 33 H 0.12 2.34 7.37 -52.49 -0.39 1.95 16 34 H 0.12 1.75 6.30 -52.49 -0.33 1.41 16 LS Contribution 287.03 15.07 4.33 4.33 Total: -1.00 -31.12 287.03 -4.76 -35.88 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -4.19 Total: 7.68 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.01 Total: -9.43 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.43 Total: -37.01 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.11 Total: -17.18 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.21 Total: 15.73 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.12 -4.76 -35.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259803544.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.175 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds