Wall clock time and date at job start Mon Mar 30 2020 04:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46908 * 110.99747 * 2 1 4 4 H 1.09001 * 109.47105 * 319.40747 * 3 2 1 5 5 C 1.50697 * 109.47135 * 199.40471 * 3 2 1 6 6 H 1.07997 * 120.00361 * 240.00170 * 5 3 2 7 7 C 1.37881 * 119.99968 * 60.00130 * 5 3 2 8 8 N 1.31519 * 119.99569 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00425 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47184 * 59.99957 * 9 7 5 11 11 H 1.48495 * 109.47305 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46900 * 300.00066 * 9 7 5 13 13 C 1.50699 * 109.46834 * 79.40956 * 3 2 1 14 14 C 1.38243 * 119.97209 * 26.70959 * 13 3 2 15 15 C 1.38212 * 120.11250 * 179.77838 * 14 13 3 16 16 C 1.38231 * 120.11309 * 0.52177 * 15 14 13 17 17 C 1.38660 * 120.06912 * 359.48183 * 16 15 14 18 18 C 1.38668 * 119.96438 * 206.68921 * 13 3 2 19 19 O 1.36104 * 119.39858 * 359.81970 * 18 13 3 20 20 C 1.43179 * 116.69534 * 162.81055 * 19 18 13 21 21 C 1.53464 * 108.23933 * 46.24989 * 20 19 18 22 22 O 1.36109 * 119.40532 * 180.02562 * 17 16 15 23 23 H 1.08997 * 109.46770 * 64.88770 * 1 2 3 24 24 H 1.09001 * 109.46907 * 184.88240 * 1 2 3 25 25 H 1.08998 * 109.46876 * 304.88015 * 1 2 3 26 26 H 1.00906 * 111.00132 * 123.94924 * 2 1 3 27 27 H 0.97005 * 119.99792 * 180.02562 * 8 7 5 28 28 H 1.07997 * 119.93694 * 0.02562 * 14 13 3 29 29 H 1.07999 * 119.93650 * 180.31793 * 15 14 13 30 30 H 1.08002 * 119.96997 * 179.75262 * 16 15 14 31 31 H 1.09008 * 109.70961 * 286.56164 * 20 19 18 32 32 H 1.08997 * 109.71030 * 165.93763 * 20 19 18 33 33 H 1.08999 * 109.70803 * 180.55823 * 21 20 19 34 34 H 1.09001 * 109.73924 * 59.96233 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3971 1.9904 -0.6687 5 6 3.4265 1.3603 -0.4720 6 1 4.2113 1.7241 0.1745 7 6 3.7340 0.8855 -1.7295 8 7 2.7782 0.4429 -2.5171 9 14 5.5077 0.8722 -2.3150 10 1 6.3234 0.0296 -1.4041 11 1 5.5707 0.3172 -3.6909 12 1 6.0393 2.2589 -2.3152 13 6 1.9316 1.9340 1.3966 14 6 1.9737 1.0840 2.4861 15 6 1.9200 1.5971 3.7683 16 6 1.8131 2.9611 3.9656 17 6 1.7703 3.8192 2.8773 18 6 1.8311 3.3038 1.5877 19 8 1.7948 4.1284 0.5055 20 6 1.3173 5.4599 0.7272 21 6 2.0002 6.0117 1.9859 22 8 1.6655 5.1599 3.0872 23 1 -0.3633 0.4361 -0.9305 24 1 -0.3633 -1.0240 0.0875 25 1 -0.3633 0.5877 0.8430 26 1 1.8307 -0.5261 0.7814 27 1 2.9945 0.1086 -3.4016 28 1 2.0528 0.0176 2.3349 29 1 1.9583 0.9308 4.6174 30 1 1.7673 3.3592 4.9685 31 1 0.2371 5.4437 0.8721 32 1 1.5645 6.0865 -0.1297 33 1 1.6455 7.0234 2.1830 34 1 3.0808 6.0223 1.8439 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260003768.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:57 Heat of formation + Delta-G solvation = -32.630574 kcal Electronic energy + Delta-G solvation = -18712.831429 eV Core-core repulsion = 15804.873358 eV Total energy + Delta-G solvation = -2907.958072 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.78562 -37.75295 -36.77173 -34.92947 -31.98208 -30.82878 -30.10977 -27.94391 -26.87497 -24.43057 -23.62206 -22.75382 -20.72763 -19.87150 -18.07985 -16.90270 -16.63014 -16.44336 -14.96976 -14.86306 -14.42833 -14.38642 -13.96757 -13.84239 -13.59727 -12.96291 -12.89167 -12.61488 -11.98048 -11.66773 -11.46819 -11.28654 -10.88955 -10.83308 -10.70023 -10.57794 -10.31955 -10.14520 -9.59008 -9.16589 -8.33510 -7.76704 -7.52023 -6.89689 -5.79771 -3.91994 1.84987 1.92478 3.40457 3.40893 3.44358 3.47761 3.71078 4.27614 4.53888 4.57636 5.02298 5.09973 5.11536 5.36012 5.42965 5.50480 5.66426 5.73786 5.88216 5.99431 6.03404 6.32203 6.39669 6.47702 6.72469 6.76075 6.81939 6.99905 7.18840 7.38555 7.45903 7.95718 7.99773 8.30759 8.64462 8.84364 9.18380 9.73988 11.25042 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020910 B = 0.008608 C = 0.007442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.765138 B = 3251.855419 C = 3761.752715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.651 5.651 3 C 0.260 3.740 4 H 0.054 0.946 5 C -0.514 4.514 6 H 0.051 0.949 7 C 0.085 3.915 8 N -0.851 5.851 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.279 1.279 13 C -0.060 4.060 14 C -0.129 4.129 15 C -0.117 4.117 16 C -0.141 4.141 17 C 0.040 3.960 18 C 0.051 3.949 19 O -0.282 6.282 20 C 0.018 3.982 21 C 0.022 3.978 22 O -0.315 6.315 23 H 0.055 0.945 24 H 0.043 0.957 25 H -0.003 1.003 26 H 0.314 0.686 27 H 0.255 0.745 28 H 0.127 0.873 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.689 7.083 8.998 12.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.281 5.281 3 C 0.152 3.848 4 H 0.071 0.929 5 C -0.553 4.553 6 H 0.069 0.931 7 C -0.121 4.121 8 N -0.486 5.486 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.205 1.205 13 C -0.063 4.063 14 C -0.147 4.147 15 C -0.136 4.136 16 C -0.160 4.160 17 C -0.004 4.004 18 C 0.006 3.994 19 O -0.196 6.196 20 C -0.059 4.059 21 C -0.054 4.054 22 O -0.231 6.231 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.015 0.985 26 H 0.133 0.867 27 H 0.065 0.935 28 H 0.145 0.855 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.087 0.913 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.708 6.966 8.070 11.288 hybrid contribution 0.783 0.517 0.543 1.085 sum -2.925 7.484 8.614 11.779 Atomic orbital electron populations 1.22104 0.91749 0.98831 0.98964 1.61022 1.03601 1.16175 1.47329 1.18232 0.96793 0.85105 0.84680 0.92873 1.20680 0.90799 1.43941 0.99914 0.93076 1.24886 0.96281 0.94473 0.96459 1.70070 1.31238 1.39355 1.07914 0.86813 0.86058 0.78136 0.77717 1.20351 1.21413 1.20513 1.21043 0.95015 0.89470 1.00796 1.20802 1.02608 0.99944 0.91360 1.20762 1.01842 0.93886 0.97069 1.20148 1.06803 0.92456 0.96575 1.18902 1.05473 0.82914 0.93132 1.18771 1.04974 0.91063 0.84602 1.86562 1.81092 1.21274 1.30674 1.23536 0.98725 0.84312 0.99294 1.23551 1.00834 0.94218 0.86807 1.86218 1.84729 1.14019 1.38092 0.92659 0.93815 0.98505 0.86682 0.93483 0.85517 0.85999 0.85948 0.91294 0.86597 0.86862 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.47 60.07 0.63 1.33 16 2 N -0.65 -15.55 5.76 -116.49 -0.67 -16.22 16 3 C 0.26 6.61 1.80 -70.01 -0.13 6.48 16 4 H 0.05 1.52 7.40 -51.93 -0.38 1.14 16 5 C -0.51 -14.42 8.75 -34.44 -0.30 -14.72 16 6 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 7 C 0.09 2.40 5.39 -17.82 -0.10 2.31 16 8 N -0.85 -24.86 12.77 55.43 0.71 -24.16 16 9 Si 0.88 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C -0.06 -1.34 4.41 -104.46 -0.46 -1.80 16 14 C -0.13 -2.47 9.22 -39.59 -0.36 -2.84 16 15 C -0.12 -1.94 10.04 -39.59 -0.40 -2.34 16 16 C -0.14 -2.39 9.96 -39.43 -0.39 -2.78 16 17 C 0.04 0.76 6.49 -39.14 -0.25 0.50 16 18 C 0.05 1.09 6.47 -39.13 -0.25 0.84 16 19 O -0.28 -5.88 9.47 -32.84 -0.31 -6.19 16 20 C 0.02 0.26 7.26 37.40 0.27 0.53 16 21 C 0.02 0.29 7.26 37.40 0.27 0.56 16 22 O -0.32 -5.27 10.42 -32.86 -0.34 -5.61 16 23 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.00 -0.07 7.68 -51.93 -0.40 -0.47 16 26 H 0.31 6.93 6.26 -39.29 -0.25 6.68 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.13 2.30 5.97 -52.49 -0.31 1.98 16 29 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 285.13 15.07 4.30 4.30 Total: -1.00 -31.89 285.13 -7.08 -38.97 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -4.27 Total: 4.18 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -1.47 Total: -11.93 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.04 Total: -40.37 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.65 Total: -11.80 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.89 -7.08 -38.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260003768.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.340 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds