Wall clock time and date at job start Mon Mar 30 2020 03:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46944 * 2 1 4 4 C 1.50698 * 109.47331 * 119.99963 * 2 1 3 5 5 C 1.38286 * 119.98557 * 62.35237 * 4 2 1 6 6 C 1.38206 * 120.14450 * 179.97438 * 5 4 2 7 7 C 1.38282 * 120.14427 * 0.03064 * 6 5 4 8 8 C 1.38507 * 120.02640 * 359.97438 * 7 6 5 9 9 C 1.38499 * 119.98735 * 242.08353 * 4 2 1 10 10 O 1.36506 * 131.53932 * 0.66990 * 9 4 2 11 11 C 1.43989 * 105.56116 * 162.24730 * 10 9 4 12 12 O 1.36500 * 131.53254 * 180.02562 * 8 7 6 13 13 C 1.52997 * 109.47171 * 240.00000 * 2 1 3 14 14 H 1.08994 * 109.47501 * 301.79101 * 13 2 1 15 15 N 1.46904 * 109.47185 * 61.79309 * 13 2 1 16 16 C 1.50703 * 109.47225 * 181.78965 * 13 2 1 17 17 H 1.08003 * 119.99893 * 0.02562 * 16 13 2 18 18 C 1.37874 * 120.00165 * 179.97438 * 16 13 2 19 19 N 1.31509 * 120.00066 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00056 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47087 * 60.00242 * 20 18 16 22 22 H 1.48500 * 109.47154 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47195 * 300.00329 * 20 18 16 24 24 H 1.08996 * 109.47411 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47106 * 59.99748 * 1 2 3 26 26 H 1.09001 * 109.47334 * 299.99937 * 1 2 3 27 27 H 1.07998 * 119.92369 * 359.95881 * 5 4 2 28 28 H 1.07999 * 119.92860 * 180.02562 * 6 5 4 29 29 H 1.08002 * 119.98343 * 179.97438 * 7 6 5 30 30 H 1.08995 * 110.56933 * 268.32185 * 11 10 9 31 31 H 1.08997 * 110.57206 * 145.45137 * 11 10 9 32 32 H 1.00895 * 110.99695 * 293.96514 * 15 13 2 33 33 H 1.00900 * 110.99661 * 57.91422 * 15 13 2 34 34 H 0.96996 * 120.00385 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.7387 -2.0477 1.4247 6 6 2.1982 -2.7025 2.5517 7 6 2.9530 -2.0232 3.4903 8 6 3.2509 -0.6837 3.3023 9 6 2.7926 -0.0251 2.1635 10 8 3.2099 1.2736 2.2132 11 6 3.5871 1.5060 3.5833 12 8 3.9631 0.2002 4.0605 13 6 2.0399 -0.7212 -1.2492 14 1 1.6507 -1.7392 -1.2655 15 7 1.5860 -0.0042 -2.4483 16 6 3.5463 -0.7598 -1.2272 17 1 4.0859 -0.3147 -0.4043 18 6 4.2356 -1.3641 -2.2571 19 7 3.5785 -1.9064 -3.2589 20 14 6.1027 -1.4125 -2.2295 21 1 6.5612 -2.1372 -1.0172 22 1 6.5978 -2.1124 -3.4420 23 1 6.6336 -0.0258 -2.2076 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 1.1488 -2.5814 0.6942 28 1 1.9672 -3.7471 2.6997 29 1 3.3104 -2.5374 4.3702 30 1 2.7423 1.8939 4.1525 31 1 4.4331 2.1911 3.6367 32 1 0.5820 -0.0491 -2.5380 33 1 1.9058 0.9528 -2.4400 34 1 4.0634 -2.3313 -3.9837 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260475911.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:31 Heat of formation + Delta-G solvation = -59.586358 kcal Electronic energy + Delta-G solvation = -18678.917252 eV Core-core repulsion = 15769.790290 eV Total energy + Delta-G solvation = -2909.126962 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.03851 -39.49958 -37.46421 -36.87441 -34.21540 -32.34768 -30.79906 -29.75435 -28.14612 -26.67769 -25.13223 -23.93185 -23.20914 -20.85660 -18.92483 -18.46960 -18.34188 -18.10176 -17.09658 -16.62966 -16.01669 -15.45970 -15.35762 -15.11064 -14.93147 -14.56922 -14.12637 -13.89749 -13.68631 -13.35360 -13.22557 -13.14907 -12.87645 -12.76920 -12.46161 -12.04503 -11.73825 -11.60075 -11.41069 -10.92657 -10.48506 -9.59910 -8.97136 -8.66711 -7.93392 -6.09848 0.30653 0.41231 1.38509 1.39288 1.46475 1.91325 2.47239 2.64803 2.73777 3.30765 3.57168 3.84176 3.98172 4.11194 4.20784 4.28939 4.41319 4.45982 4.52506 4.57511 4.65038 4.72770 5.01967 5.06841 5.19366 5.27216 5.32813 5.50327 5.56966 5.64912 5.76896 5.86201 6.26444 6.29621 6.73419 7.17886 7.38525 7.60443 9.09480 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019134 B = 0.009111 C = 0.007892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.035560 B = 3072.419434 C = 3546.974190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 H 0.046 0.954 4 C -0.030 4.030 5 C -0.112 4.112 6 C -0.102 4.102 7 C -0.118 4.118 8 C 0.009 3.991 9 C 0.002 3.998 10 O -0.332 6.332 11 C 0.204 3.796 12 O -0.325 6.325 13 C 0.244 3.756 14 H 0.017 0.983 15 N -0.825 5.825 16 C -0.531 4.531 17 H 0.031 0.969 18 C 0.040 3.960 19 N -0.877 5.877 20 Si 0.927 3.073 21 H -0.279 1.279 22 H -0.281 1.281 23 H -0.280 1.280 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.137 0.863 28 H 0.169 0.831 29 H 0.157 0.843 30 H 0.105 0.895 31 H 0.153 0.847 32 H 0.314 0.686 33 H 0.318 0.682 34 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.090 2.350 13.663 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.099 4.099 3 H 0.064 0.936 4 C -0.031 4.031 5 C -0.130 4.130 6 C -0.119 4.119 7 C -0.137 4.137 8 C -0.035 4.035 9 C -0.041 4.041 10 O -0.249 6.249 11 C 0.093 3.907 12 O -0.242 6.242 13 C 0.134 3.866 14 H 0.035 0.965 15 N -0.353 5.353 16 C -0.570 4.570 17 H 0.049 0.951 18 C -0.163 4.163 19 N -0.514 5.514 20 Si 0.754 3.246 21 H -0.205 1.205 22 H -0.207 1.207 23 H -0.206 1.206 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.154 0.846 28 H 0.187 0.813 29 H 0.174 0.826 30 H 0.122 0.878 31 H 0.170 0.830 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.472 1.864 13.065 13.935 hybrid contribution 0.889 1.007 0.427 1.409 sum -3.584 2.871 13.492 14.252 Atomic orbital electron populations 1.21787 0.93248 1.02320 1.01680 1.20992 0.96201 0.98246 0.94502 0.93582 1.19012 0.95580 0.94427 0.94096 1.20974 1.01466 0.92233 0.98333 1.21238 0.97054 1.01127 0.92530 1.20335 1.01336 0.89551 1.02439 1.20078 0.97434 0.94223 0.91720 1.19814 1.01752 0.84804 0.97776 1.87312 1.80858 1.26098 1.30676 1.26036 1.02201 0.85235 0.77218 1.87253 1.62665 1.16597 1.57696 1.18806 0.93116 0.91877 0.82832 0.96512 1.58987 1.13931 1.18084 1.44252 1.21113 0.92584 1.37581 1.05687 0.95079 1.25476 1.00423 0.94984 0.95385 1.70172 1.35478 1.36341 1.09427 0.86140 0.83445 0.77867 0.77154 1.20488 1.20676 1.20624 0.91913 0.91927 0.92453 0.84567 0.81339 0.82565 0.87777 0.82991 0.87351 0.87061 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 8.74 71.98 0.63 -3.61 16 2 C -0.08 -3.18 2.27 -11.54 -0.03 -3.21 16 3 H 0.05 2.03 7.69 -2.38 -0.02 2.01 16 4 C -0.03 -1.18 3.74 -19.79 -0.07 -1.25 16 5 C -0.11 -3.90 8.73 22.27 0.19 -3.71 16 6 C -0.10 -2.92 10.04 22.27 0.22 -2.70 16 7 C -0.12 -3.49 10.06 22.34 0.22 -3.27 16 8 C 0.01 0.33 7.15 22.59 0.16 0.49 16 9 C 0.00 0.10 6.81 22.59 0.15 0.25 16 10 O -0.33 -12.53 11.07 -76.12 -0.84 -13.37 16 11 C 0.20 5.44 8.89 113.37 1.01 6.45 16 12 O -0.33 -10.47 11.41 -76.05 -0.87 -11.34 16 13 C 0.24 11.82 2.02 44.17 0.09 11.91 16 14 H 0.02 0.90 7.32 -2.39 -0.02 0.88 16 15 N -0.83 -38.37 8.42 -171.80 -1.45 -39.82 16 16 C -0.53 -29.82 8.14 25.60 0.21 -29.62 16 17 H 0.03 1.83 7.33 -2.91 -0.02 1.81 16 18 C 0.04 2.31 5.39 84.65 0.46 2.77 16 19 N -0.88 -51.96 12.77 21.45 0.27 -51.69 16 20 Si 0.93 45.85 29.54 68.60 2.03 47.88 16 21 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 23 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 24 H 0.06 1.89 7.52 -2.39 -0.02 1.87 16 25 H 0.06 1.85 6.85 -2.38 -0.02 1.84 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.14 4.56 7.11 -2.91 -0.02 4.54 16 28 H 0.17 3.46 8.06 -2.91 -0.02 3.44 16 29 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 30 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.15 3.01 8.14 -2.39 -0.02 2.99 16 32 H 0.31 12.58 7.55 -89.70 -0.68 11.90 16 33 H 0.32 14.42 8.99 -89.69 -0.81 13.62 16 34 H 0.25 14.44 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -68.93 285.70 2.04 -66.89 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -0.35 Total: 26.93 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 3.25 Total: -25.48 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -1.17 Total: -91.50 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -1.71 Total: -24.71 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -68.93 2.04 -66.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260475911.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.300 kcal (2) G-P(sol) polarization free energy of solvation -68.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds