Wall clock time and date at job start Mon Mar 30 2020 03:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.47125 * 2 1 4 4 C 1.50700 * 109.47104 * 239.99704 * 2 1 3 5 5 C 1.38252 * 119.92848 * 300.40749 * 4 2 1 6 6 C 1.38245 * 120.13857 * 179.69084 * 5 4 2 7 7 C 1.38537 * 120.03013 * 0.59356 * 6 5 4 8 8 C 1.39270 * 119.82937 * 359.68333 * 7 6 5 9 9 C 1.38238 * 119.92373 * 120.67936 * 4 2 1 10 10 O 1.36500 * 108.64070 * 179.97438 * 8 7 6 11 11 C 1.43991 * 105.48365 * 342.71840 * 10 8 7 12 12 O 1.36503 * 131.53254 * 179.68608 * 7 6 5 13 13 C 1.52994 * 109.47168 * 119.99590 * 2 1 3 14 14 H 1.09000 * 109.47037 * 62.39562 * 13 2 1 15 15 N 1.46904 * 109.47199 * 302.39873 * 13 2 1 16 16 C 1.50700 * 109.47305 * 182.39256 * 13 2 1 17 17 H 1.07995 * 120.00036 * 0.02562 * 16 13 2 18 18 C 1.37875 * 119.99851 * 179.97438 * 16 13 2 19 19 N 1.31517 * 120.00485 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99750 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47267 * 90.00462 * 20 18 16 22 22 H 1.48504 * 109.46891 * 210.00353 * 20 18 16 23 23 H 1.48501 * 109.47098 * 329.99975 * 20 18 16 24 24 H 1.08997 * 109.47013 * 300.00536 * 1 2 3 25 25 H 1.09001 * 109.46677 * 60.00494 * 1 2 3 26 26 H 1.08993 * 109.46751 * 180.02562 * 1 2 3 27 27 H 1.07996 * 119.92846 * 359.97438 * 5 4 2 28 28 H 1.07994 * 119.98006 * 180.27049 * 6 5 4 29 29 H 1.07997 * 119.99075 * 0.02562 * 9 4 2 30 30 H 1.08998 * 110.57413 * 268.55704 * 11 10 8 31 31 H 1.09009 * 110.57203 * 145.68508 * 11 10 8 32 32 H 1.00898 * 110.99594 * 305.88461 * 15 13 2 33 33 H 1.00894 * 111.00094 * 69.84788 * 15 13 2 34 34 H 0.96998 * 120.00245 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.6905 -2.0316 -1.4519 6 6 2.1437 -2.6857 -2.5824 7 6 2.9522 -2.0215 -3.4904 8 6 3.3013 -0.6924 -3.2644 9 6 2.8386 -0.0414 -2.1322 10 8 4.0954 -0.2692 -4.2908 11 6 4.5626 -1.4691 -4.9352 12 8 3.5271 -2.4309 -4.6589 13 6 2.0401 -0.7211 1.2492 14 1 1.7122 -1.7604 1.2281 15 7 1.5036 -0.0628 2.4480 16 6 3.5459 -0.6700 1.2793 17 1 4.0852 -0.1725 0.4868 18 6 4.2350 -1.2574 2.3190 19 7 3.5783 -1.8628 3.2843 20 14 6.1015 -1.1934 2.3566 21 1 6.5405 0.0254 3.0826 22 1 6.6242 -2.3979 3.0502 23 1 6.6236 -1.1569 0.9669 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0276 0.0005 27 1 1.0645 -2.5524 -0.7426 28 1 1.8715 -3.7164 -2.7551 29 1 3.1080 0.9892 -1.9543 30 1 5.5103 -1.7914 -4.5039 31 1 4.6631 -1.3128 -6.0094 32 1 1.7127 0.9243 2.4425 33 1 0.5111 -0.2219 2.5343 34 1 4.0631 -2.2764 4.0156 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260672688.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:39 Heat of formation + Delta-G solvation = -59.184181 kcal Electronic energy + Delta-G solvation = -18337.775149 eV Core-core repulsion = 15428.665626 eV Total energy + Delta-G solvation = -2909.109522 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.05131 -39.75451 -37.22838 -36.92291 -34.11866 -32.18221 -31.38446 -29.53526 -28.15093 -26.60489 -25.01251 -23.99338 -23.28316 -21.03496 -18.82164 -18.51628 -18.36163 -17.90509 -17.20727 -16.59169 -16.06497 -15.55824 -15.40385 -14.94822 -14.80356 -14.66568 -14.19226 -13.95790 -13.87662 -13.50308 -13.33013 -13.10405 -12.75429 -12.44864 -12.35878 -12.19405 -11.70971 -11.60959 -11.32141 -10.87103 -10.45271 -9.76042 -9.04570 -8.56697 -7.89750 -6.06537 0.26118 0.33732 1.40304 1.43070 1.50206 1.83100 2.49782 2.57878 2.72817 3.34912 3.55956 3.85012 3.92851 4.07658 4.11244 4.29554 4.36421 4.45882 4.58081 4.60362 4.67203 4.75771 5.04086 5.11653 5.14847 5.18183 5.31159 5.44092 5.54036 5.61759 5.81675 5.90732 6.21420 6.33172 6.78306 7.26221 7.42251 7.64409 9.12987 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019919 B = 0.008126 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.326905 B = 3444.945809 C = 4289.261904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.077 4.077 3 H 0.062 0.938 4 C -0.027 4.027 5 C -0.107 4.107 6 C -0.096 4.096 7 C -0.002 4.002 8 C 0.016 3.984 9 C -0.114 4.114 10 O -0.327 6.327 11 C 0.204 3.796 12 O -0.323 6.323 13 C 0.241 3.759 14 H 0.013 0.987 15 N -0.827 5.827 16 C -0.531 4.531 17 H 0.043 0.957 18 C 0.037 3.963 19 N -0.881 5.881 20 Si 0.928 3.072 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.141 0.859 28 H 0.153 0.847 29 H 0.130 0.870 30 H 0.092 0.908 31 H 0.167 0.833 32 H 0.320 0.680 33 H 0.315 0.685 34 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.217 1.119 -13.139 13.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.098 4.098 3 H 0.081 0.919 4 C -0.028 4.028 5 C -0.125 4.125 6 C -0.115 4.115 7 C -0.046 4.046 8 C -0.028 4.028 9 C -0.133 4.133 10 O -0.244 6.244 11 C 0.094 3.906 12 O -0.240 6.240 13 C 0.131 3.869 14 H 0.031 0.969 15 N -0.355 5.355 16 C -0.570 4.570 17 H 0.061 0.939 18 C -0.165 4.165 19 N -0.518 5.518 20 Si 0.755 3.245 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.159 0.841 28 H 0.171 0.829 29 H 0.148 0.852 30 H 0.110 0.890 31 H 0.184 0.816 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.686 0.557 -12.767 13.059 hybrid contribution 0.941 0.542 -0.508 1.199 sum -1.745 1.100 -13.276 13.435 Atomic orbital electron populations 1.21828 0.93394 1.02222 1.01983 1.21074 0.96099 0.98884 0.93753 0.91940 1.19610 0.94681 0.94344 0.94167 1.20891 1.01105 0.94061 0.96488 1.20246 0.98482 1.00902 0.91856 1.19872 1.02589 0.93122 0.89042 1.19866 0.98440 0.93091 0.91415 1.20066 1.00836 1.01289 0.91080 1.87273 1.63537 1.32136 1.41483 1.26062 0.90289 0.72438 1.01844 1.87264 1.49514 1.50841 1.36353 1.18829 0.92829 0.92225 0.83031 0.96931 1.58940 1.16540 1.15635 1.44363 1.21273 0.92510 1.36182 1.07020 0.93916 1.25515 1.00356 0.95035 0.95633 1.70189 1.35379 1.35554 1.10666 0.86065 0.83494 0.77301 0.77639 1.20547 1.21305 1.20254 0.91824 0.92014 0.92348 0.84105 0.82945 0.85183 0.89017 0.81562 0.86777 0.87314 0.94001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 8.62 71.98 0.62 -3.36 16 2 C -0.08 -2.83 2.20 -11.54 -0.03 -2.85 16 3 H 0.06 2.32 7.87 -2.38 -0.02 2.30 16 4 C -0.03 -0.99 3.97 -19.86 -0.08 -1.07 16 5 C -0.11 -3.69 8.68 22.27 0.19 -3.49 16 6 C -0.10 -3.09 10.06 22.34 0.22 -2.87 16 7 C 0.00 -0.08 7.15 22.59 0.16 0.08 16 8 C 0.02 0.56 7.15 22.59 0.16 0.73 16 9 C -0.11 -4.16 9.68 22.34 0.22 -3.94 16 10 O -0.33 -10.38 11.40 -76.06 -0.87 -11.25 16 11 C 0.20 4.84 8.89 113.37 1.01 5.85 16 12 O -0.32 -9.68 11.40 -76.09 -0.87 -10.55 16 13 C 0.24 11.03 2.11 44.17 0.09 11.12 16 14 H 0.01 0.65 7.32 -2.39 -0.02 0.63 16 15 N -0.83 -36.34 8.26 -171.80 -1.42 -37.76 16 16 C -0.53 -28.24 8.21 25.60 0.21 -28.03 16 17 H 0.04 2.30 7.52 -2.91 -0.02 2.28 16 18 C 0.04 2.07 5.39 84.65 0.46 2.53 16 19 N -0.88 -51.22 12.77 21.45 0.27 -50.95 16 20 Si 0.93 44.35 29.54 68.60 2.03 46.38 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 H 0.06 1.72 6.88 -2.39 -0.02 1.70 16 25 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 1.65 7.36 -2.39 -0.02 1.63 16 27 H 0.14 4.56 7.07 -2.91 -0.02 4.54 16 28 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 29 H 0.13 4.51 7.94 -2.91 -0.02 4.48 16 30 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.17 2.42 8.14 -2.38 -0.02 2.40 16 32 H 0.32 13.30 8.97 -89.70 -0.80 12.50 16 33 H 0.31 11.99 7.66 -89.70 -0.69 11.30 16 34 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -64.64 286.18 2.03 -62.61 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -0.36 Total: 26.81 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 3.24 Total: -25.31 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -1.15 Total: -88.70 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -1.74 Total: -21.80 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -64.64 2.03 -62.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260672688.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.429 kcal (2) G-P(sol) polarization free energy of solvation -64.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds