Wall clock time and date at job start Mon Mar 30 2020 03:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47315 * 2 1 4 4 C 1.50699 * 109.47064 * 239.99850 * 2 1 3 5 5 C 1.38259 * 119.92722 * 300.02669 * 4 2 1 6 6 C 1.38236 * 120.13830 * 180.02562 * 5 4 2 7 7 C 1.38545 * 120.03330 * 359.95241 * 6 5 4 8 8 C 1.39263 * 119.82523 * 0.02562 * 7 6 5 9 9 C 1.38238 * 119.92734 * 120.00152 * 4 2 1 10 10 O 1.36509 * 108.63581 * 180.02562 * 8 7 6 11 11 C 1.43983 * 105.48263 * 342.71286 * 10 8 7 12 12 O 1.36495 * 131.53010 * 180.02562 * 7 6 5 13 13 C 1.52998 * 109.47119 * 119.99802 * 2 1 3 14 14 H 1.08998 * 109.47491 * 59.99897 * 13 2 1 15 15 N 1.46899 * 109.47117 * 180.02562 * 13 2 1 16 16 C 1.50699 * 109.47192 * 299.99971 * 13 2 1 17 17 H 1.08000 * 120.00108 * 0.02562 * 16 13 2 18 18 C 1.37883 * 120.00223 * 180.02562 * 16 13 2 19 19 N 1.31513 * 119.99743 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00129 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47610 * 89.99792 * 20 18 16 22 22 H 1.48505 * 109.46966 * 209.99872 * 20 18 16 23 23 H 1.48505 * 109.47058 * 329.99359 * 20 18 16 24 24 H 1.08998 * 109.47479 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46968 * 300.00119 * 1 2 3 26 26 H 1.08997 * 109.47026 * 60.00039 * 1 2 3 27 27 H 1.07994 * 119.92629 * 0.02562 * 5 4 2 28 28 H 1.08003 * 119.98081 * 180.22131 * 6 5 4 29 29 H 1.07994 * 119.98477 * 359.97438 * 9 4 2 30 30 H 1.09003 * 110.57504 * 268.55824 * 11 10 8 31 31 H 1.09009 * 110.57049 * 145.68580 * 11 10 8 32 32 H 1.00895 * 111.00378 * 60.00205 * 15 13 2 33 33 H 1.00905 * 110.99685 * 183.95755 * 15 13 2 34 34 H 0.97000 * 119.99827 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.6969 -2.0340 -1.4480 6 6 2.1557 -2.6900 -2.5749 7 6 2.9526 -2.0217 -3.4902 8 6 3.2900 -0.6884 -3.2712 9 6 2.8270 -0.0372 -2.1394 10 8 4.0732 -0.2613 -4.3045 11 6 4.5480 -1.4589 -4.9475 12 8 3.5247 -2.4301 -4.6602 13 6 2.0400 -0.7212 1.2493 14 1 1.6767 -1.7488 1.2494 15 7 3.5090 -0.7207 1.2496 16 6 1.5376 -0.0108 2.4797 17 1 0.9164 0.8671 2.3806 18 6 1.8712 -0.4815 3.7320 19 7 2.6273 -1.5507 3.8527 20 14 1.2479 0.3988 5.2572 21 1 -0.0598 -0.1771 5.6615 22 1 2.2263 0.2287 6.3614 23 1 1.0819 1.8445 4.9612 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.0752 -2.5563 -0.7360 28 1 1.8892 -3.7229 -2.7441 29 1 3.0867 0.9968 -1.9673 30 1 5.5017 -1.7702 -4.5211 31 1 4.6398 -1.3056 -6.0228 32 1 3.8702 0.2214 1.2498 33 1 3.8705 -1.2468 2.0310 34 1 2.8616 -1.8821 4.7337 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260672695.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:41 Heat of formation + Delta-G solvation = -66.010194 kcal Electronic energy + Delta-G solvation = -18124.456250 eV Core-core repulsion = 15215.050729 eV Total energy + Delta-G solvation = -2909.405520 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.01141 -39.66167 -37.18700 -36.92587 -34.19268 -32.07301 -31.42111 -29.89166 -27.52645 -26.58910 -25.08008 -23.95142 -23.34779 -21.07427 -18.79525 -18.67260 -18.20048 -17.95912 -17.09461 -16.60505 -15.90565 -15.48055 -15.35871 -14.96113 -14.74694 -14.45301 -14.30827 -13.95772 -13.89830 -13.47506 -13.13867 -12.96119 -12.63636 -12.49575 -12.25775 -12.18855 -11.93261 -11.58946 -11.34202 -11.06660 -10.55598 -9.67895 -9.04930 -8.84239 -8.02720 -6.25927 0.30173 0.38218 1.40393 1.43595 1.51388 1.87393 2.42133 2.62167 2.76950 3.15546 3.60226 3.89701 3.99010 4.11827 4.15613 4.33425 4.41249 4.44708 4.62960 4.65944 4.78253 5.00164 5.15205 5.18624 5.22979 5.31374 5.39662 5.49971 5.57458 5.64410 5.77846 5.95306 6.21832 6.26445 6.78412 7.08136 7.22998 7.49843 8.91444 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.044193 B = 0.005218 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.432178 B = 5365.266329 C = 5431.166354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.036 4.036 3 H 0.063 0.937 4 C -0.026 4.026 5 C -0.109 4.109 6 C -0.097 4.097 7 C -0.001 4.001 8 C 0.019 3.981 9 C -0.106 4.106 10 O -0.326 6.326 11 C 0.205 3.795 12 O -0.324 6.324 13 C 0.226 3.774 14 H 0.010 0.990 15 N -0.844 5.844 16 C -0.556 4.556 17 H 0.056 0.944 18 C 0.019 3.981 19 N -0.919 5.919 20 Si 0.950 3.050 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.270 1.270 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.134 0.866 28 H 0.150 0.850 29 H 0.134 0.866 30 H 0.096 0.904 31 H 0.165 0.835 32 H 0.313 0.687 33 H 0.340 0.660 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.829 0.410 -13.505 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.055 4.055 3 H 0.081 0.919 4 C -0.027 4.027 5 C -0.127 4.127 6 C -0.115 4.115 7 C -0.045 4.045 8 C -0.025 4.025 9 C -0.125 4.125 10 O -0.243 6.243 11 C 0.094 3.906 12 O -0.241 6.241 13 C 0.115 3.885 14 H 0.028 0.972 15 N -0.371 5.371 16 C -0.596 4.596 17 H 0.074 0.926 18 C -0.180 4.180 19 N -0.560 5.560 20 Si 0.777 3.223 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.195 1.195 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.152 0.848 28 H 0.167 0.833 29 H 0.152 0.848 30 H 0.113 0.887 31 H 0.182 0.818 32 H 0.121 0.879 33 H 0.154 0.846 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.870 -0.067 -14.323 14.349 hybrid contribution -0.045 0.737 1.985 2.118 sum 0.825 0.670 -12.337 12.383 Atomic orbital electron populations 1.21676 0.93693 1.01764 1.01300 1.20131 0.96048 0.98058 0.91230 0.91865 1.19654 0.94609 0.94134 0.94287 1.20847 1.00909 0.94271 0.96641 1.20192 0.98687 1.00803 0.91847 1.19837 1.02628 0.93123 0.88868 1.19828 0.98605 0.92804 0.91233 1.19999 1.00508 1.01182 0.90767 1.87281 1.63956 1.32104 1.40991 1.26058 0.90542 0.72230 1.01756 1.87264 1.50438 1.50275 1.36151 1.18839 0.86053 0.93814 0.89752 0.97221 1.59461 1.09546 1.17440 1.50609 1.22305 1.31754 1.12847 0.92657 0.92555 1.25688 0.95264 0.95355 1.01694 1.69858 1.37953 1.23913 1.24245 0.85682 0.77941 0.79144 0.79536 1.20484 1.21452 1.19513 0.92989 0.92542 0.92104 0.84835 0.83251 0.84809 0.88666 0.81840 0.87866 0.84637 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 8.75 71.98 0.63 -3.76 16 2 C -0.04 -1.37 2.27 -11.54 -0.03 -1.40 16 3 H 0.06 2.43 7.87 -2.38 -0.02 2.41 16 4 C -0.03 -0.95 4.38 -19.86 -0.09 -1.03 16 5 C -0.11 -3.70 8.70 22.27 0.19 -3.50 16 6 C -0.10 -3.01 10.06 22.34 0.22 -2.78 16 7 C 0.00 -0.02 7.15 22.59 0.16 0.14 16 8 C 0.02 0.64 7.15 22.59 0.16 0.80 16 9 C -0.11 -3.62 9.68 22.34 0.22 -3.40 16 10 O -0.33 -9.59 11.40 -76.15 -0.87 -10.46 16 11 C 0.20 4.42 8.89 113.37 1.01 5.43 16 12 O -0.32 -9.19 11.40 -75.99 -0.87 -10.06 16 13 C 0.23 10.56 2.12 44.17 0.09 10.66 16 14 H 0.01 0.51 7.38 -2.39 -0.02 0.50 16 15 N -0.84 -39.27 8.77 -171.81 -1.51 -40.78 16 16 C -0.56 -28.31 8.00 25.60 0.20 -28.11 16 17 H 0.06 2.82 6.71 -2.91 -0.02 2.80 16 18 C 0.02 1.02 5.38 84.66 0.46 1.47 16 19 N -0.92 -50.30 11.54 21.45 0.25 -50.05 16 20 Si 0.95 41.94 29.54 68.60 2.03 43.96 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H 0.05 1.76 7.38 -2.39 -0.02 1.74 16 25 H 0.06 2.07 6.62 -2.38 -0.02 2.05 16 26 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.13 4.50 7.09 -2.91 -0.02 4.48 16 28 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 29 H 0.13 4.25 7.94 -2.91 -0.02 4.23 16 30 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.16 2.12 8.14 -2.38 -0.02 2.10 16 32 H 0.31 14.00 8.99 -89.70 -0.81 13.20 16 33 H 0.34 17.38 7.08 -89.69 -0.63 16.75 16 34 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -58.63 284.34 1.96 -56.66 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: -0.31 Total: 36.22 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 3.24 Total: -25.50 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -1.26 Total: -90.83 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -1.73 Total: -20.52 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -58.63 1.96 -56.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260672695.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.348 kcal (2) G-P(sol) polarization free energy of solvation -58.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds