Wall clock time and date at job start Mon Mar 30 2020 04:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35976 * 117.00438 * 2 1 4 4 C 1.38820 * 120.17445 * 0.02562 * 3 2 1 5 5 C 1.37698 * 119.93707 * 180.02562 * 4 3 2 6 6 C 1.38898 * 120.83816 * 0.33771 * 5 4 3 7 7 C 1.39224 * 118.96982 * 359.47372 * 6 5 4 8 8 C 1.37959 * 120.31188 * 0.38163 * 7 6 5 9 9 C 1.50699 * 119.85342 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.47092 * 144.97779 * 9 8 7 11 11 N 1.46899 * 109.47032 * 24.97679 * 9 8 7 12 12 C 1.50699 * 109.47173 * 264.97594 * 9 8 7 13 13 H 1.08008 * 120.00017 * 359.97438 * 12 9 8 14 14 C 1.37874 * 120.00388 * 179.97438 * 12 9 8 15 15 N 1.31517 * 119.99339 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 120.00124 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.47076 * 90.00264 * 16 14 12 18 18 H 1.48503 * 109.47035 * 209.99669 * 16 14 12 19 19 H 1.48494 * 109.47427 * 330.00291 * 16 14 12 20 20 O 1.36236 * 111.20371 * 178.96759 * 6 5 4 21 21 C 1.43864 * 109.24056 * 19.03094 * 20 6 5 22 22 C 1.51654 * 132.11157 * 180.37828 * 5 4 3 23 23 H 1.08997 * 109.47146 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46778 * 300.00139 * 1 2 3 25 25 H 1.08999 * 109.46666 * 59.99623 * 1 2 3 26 26 H 1.08007 * 120.02988 * 359.97438 * 4 3 2 27 27 H 1.07992 * 119.84278 * 180.35192 * 7 6 5 28 28 H 1.00900 * 110.99948 * 299.99892 * 11 9 8 29 29 H 1.00896 * 111.00233 * 63.95247 * 11 9 8 30 30 H 0.97002 * 119.99283 * 179.97438 * 15 14 12 31 31 H 1.08997 * 110.78191 * 213.92215 * 21 20 6 32 32 H 1.09001 * 110.75605 * 90.53713 * 21 20 6 33 33 H 1.09002 * 110.93766 * 282.72252 * 22 5 4 34 34 H 1.09003 * 110.93926 * 46.36504 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2940 2.3781 0.0005 5 6 1.9243 3.6023 0.0000 6 6 3.3105 3.6895 -0.0081 7 6 4.0600 2.5162 -0.0045 8 6 3.4311 1.2883 -0.0011 9 6 4.2524 0.0248 0.0022 10 1 3.7450 -0.7369 0.5942 11 7 5.5720 0.3001 0.5860 12 6 4.4216 -0.4681 -1.4119 13 1 3.9783 0.0788 -2.2310 14 6 5.1423 -1.6170 -1.6600 15 7 5.6817 -2.2830 -0.6625 16 14 5.3513 -2.2282 -3.4127 17 1 6.5756 -1.6298 -4.0029 18 1 5.4758 -3.7080 -3.4093 19 1 4.1689 -1.8327 -4.2192 20 8 3.7225 4.9879 -0.0300 21 6 2.6441 5.8348 0.4052 22 6 1.3896 5.0215 0.0078 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 0.2152 2.3255 0.0005 27 1 5.1387 2.5675 -0.0050 28 1 6.0628 1.0037 0.0547 29 1 5.4897 0.5704 1.5545 30 1 6.1884 -3.0916 -0.8370 31 1 2.6669 6.7902 -0.1190 32 1 2.6816 5.9842 1.4843 33 1 1.0359 5.3099 -0.9821 34 1 0.5998 5.1361 0.7502 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261104478.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:03 Heat of formation + Delta-G solvation = -33.018912 kcal Electronic energy + Delta-G solvation = -18314.940068 eV Core-core repulsion = 15406.965157 eV Total energy + Delta-G solvation = -2907.974911 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77051 -38.89818 -36.30778 -34.20850 -32.19547 -31.07841 -29.08938 -28.52029 -26.69124 -25.90584 -23.38898 -21.84812 -21.50903 -20.01884 -17.30370 -16.68391 -16.66471 -16.26545 -15.77611 -15.09475 -14.49261 -14.35606 -14.01973 -13.65406 -13.31345 -12.92970 -12.70201 -12.40092 -12.23983 -12.02591 -11.63031 -11.44396 -11.19337 -10.95676 -10.77622 -10.65263 -10.31543 -9.86054 -9.68365 -9.17456 -8.35642 -8.17483 -7.13149 -7.02420 -5.77845 -3.91057 1.76672 1.92077 3.40090 3.46229 3.50024 3.56695 3.88325 4.18249 4.56527 4.58864 4.75717 5.01954 5.17710 5.33932 5.39742 5.45861 5.47807 5.51491 5.74185 5.76620 5.78526 5.98473 6.10087 6.26967 6.38875 6.51364 6.77633 6.85833 7.10131 7.49632 7.60538 7.99180 8.02391 8.30620 8.71036 9.07721 9.22974 9.75532 11.26688 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.024039 B = 0.007203 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.505248 B = 3886.172070 C = 4415.834673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.290 6.290 3 C 0.105 3.895 4 C -0.164 4.164 5 C -0.167 4.167 6 C 0.064 3.936 7 C -0.110 4.110 8 C -0.066 4.066 9 C 0.263 3.737 10 H 0.058 0.942 11 N -0.811 5.811 12 C -0.520 4.520 13 H 0.051 0.949 14 C 0.084 3.916 15 N -0.848 5.848 16 Si 0.884 3.116 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.276 1.276 20 O -0.309 6.309 21 C 0.053 3.947 22 C -0.104 4.104 23 H 0.095 0.905 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.121 0.879 27 H 0.130 0.870 28 H 0.318 0.682 29 H 0.299 0.701 30 H 0.255 0.745 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.072 11.931 3.191 15.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.203 6.203 3 C 0.059 3.941 4 C -0.183 4.183 5 C -0.168 4.168 6 C 0.020 3.980 7 C -0.129 4.129 8 C -0.069 4.069 9 C 0.153 3.847 10 H 0.076 0.924 11 N -0.337 5.337 12 C -0.559 4.559 13 H 0.069 0.931 14 C -0.122 4.122 15 N -0.484 5.484 16 Si 0.711 3.289 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.201 1.201 20 O -0.224 6.224 21 C -0.022 4.022 22 C -0.141 4.141 23 H 0.113 0.887 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.139 0.861 27 H 0.147 0.853 28 H 0.131 0.869 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.486 10.876 3.036 14.747 hybrid contribution -0.780 0.923 -0.892 1.502 sum -10.265 11.799 2.144 15.786 Atomic orbital electron populations 1.22952 0.80235 1.03345 1.00227 1.86311 1.19475 1.25839 1.88679 1.18659 0.91985 0.83673 0.99799 1.20222 0.99198 0.90678 1.08207 1.20237 0.93650 0.94265 1.08670 1.19387 0.92260 0.84733 1.01590 1.19929 0.99974 0.87898 1.05103 1.21005 0.91808 0.98187 0.95918 1.18100 0.83773 0.86217 0.96571 0.92448 1.59194 1.21450 1.50090 1.02987 1.20728 1.35097 1.09444 0.90585 0.93060 1.24908 0.95035 0.96197 0.96109 1.70110 1.32482 1.15884 1.29880 0.86763 0.78374 0.77846 0.85886 1.20782 1.21319 1.20118 1.86826 1.38453 1.14071 1.83077 1.23719 0.84478 0.94094 0.99937 1.21686 0.98295 0.91476 1.02676 0.88664 0.93632 0.93417 0.86129 0.85258 0.86917 0.89080 0.93556 0.88270 0.91126 0.89788 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.82 101.05 0.99 1.39 16 2 O -0.29 -5.88 9.63 -19.66 -0.19 -6.07 16 3 C 0.10 2.14 6.66 -39.20 -0.26 1.88 16 4 C -0.16 -2.82 9.03 -39.56 -0.36 -3.18 16 5 C -0.17 -2.79 6.27 -104.11 -0.65 -3.44 16 6 C 0.06 1.19 7.03 -38.97 -0.27 0.92 16 7 C -0.11 -2.24 9.28 -39.32 -0.36 -2.60 16 8 C -0.07 -1.46 4.99 -104.56 -0.52 -1.99 16 9 C 0.26 6.73 2.56 -70.02 -0.18 6.55 16 10 H 0.06 1.64 7.69 -51.93 -0.40 1.24 16 11 N -0.81 -19.46 8.13 -6.65 -0.05 -19.51 16 12 C -0.52 -14.71 8.71 -34.44 -0.30 -15.01 16 13 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 14 C 0.08 2.39 5.39 -17.82 -0.10 2.30 16 15 N -0.85 -25.17 12.77 55.43 0.71 -24.47 16 16 Si 0.88 21.91 29.54 -169.99 -5.02 16.89 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 O -0.31 -5.18 11.11 -20.49 -0.23 -5.41 16 21 C 0.05 0.62 8.01 38.05 0.30 0.93 16 22 C -0.10 -1.26 7.11 -26.52 -0.19 -1.45 16 23 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 24 H 0.05 0.54 7.67 -51.93 -0.40 0.15 16 25 H 0.05 0.61 7.67 -51.93 -0.40 0.21 16 26 H 0.12 1.70 6.32 -52.48 -0.33 1.37 16 27 H 0.13 2.55 6.25 -52.49 -0.33 2.22 16 28 H 0.32 7.27 7.18 -39.29 -0.28 6.99 16 29 H 0.30 6.41 9.06 -39.29 -0.36 6.05 16 30 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 285.97 15.07 4.31 4.31 Total: -1.00 -32.47 285.97 -6.52 -38.99 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.15 Total: 8.97 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.90 Total: -13.71 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.65 Total: -43.98 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -0.42 Total: -11.48 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.47 -6.52 -38.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261104478.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.972 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds