Wall clock time and date at job start Mon Mar 30 2020 03:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.46904 * 2 1 4 4 C 1.34718 * 116.99840 * 179.97438 * 3 2 1 5 5 O 1.21467 * 119.99753 * 0.02562 * 4 3 2 6 6 C 1.47730 * 119.99717 * 179.97438 * 4 3 2 7 7 C 1.39631 * 120.14314 * 180.02562 * 6 4 3 8 8 C 1.37942 * 119.84004 * 180.02562 * 7 6 4 9 9 C 1.38364 * 120.15528 * 359.97438 * 8 7 6 10 10 C 1.50707 * 119.84854 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.46993 * 20.00590 * 10 9 8 12 12 N 1.46909 * 109.46799 * 140.00398 * 10 9 8 13 13 C 1.50696 * 109.47007 * 259.99967 * 10 9 8 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 10 9 15 15 C 1.37885 * 119.99717 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.38364 * 120.30360 * 0.27921 * 9 8 7 22 22 C 1.37953 * 120.14823 * 359.44719 * 21 9 8 23 23 H 1.08996 * 109.47085 * 299.99682 * 1 2 3 24 24 H 1.08996 * 109.47330 * 60.00388 * 1 2 3 25 25 H 1.09008 * 109.46786 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47531 * 240.00093 * 2 1 3 27 27 H 1.08998 * 109.47111 * 120.00110 * 2 1 3 28 28 H 1.07999 * 120.07965 * 0.02562 * 7 6 4 29 29 H 1.08003 * 119.92366 * 180.02562 * 8 7 6 30 30 H 1.00899 * 110.99851 * 296.04501 * 12 10 9 31 31 H 1.00900 * 110.99531 * 59.99711 * 12 10 9 32 32 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 33 33 H 1.08004 * 119.92812 * 179.72567 * 21 9 8 34 34 H 1.07997 * 120.07722 * 180.27727 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3495 1.5455 0.0005 5 8 4.0894 0.5822 0.0005 6 6 3.9141 2.9106 0.0000 7 6 5.2979 3.0971 0.0000 8 6 5.8183 4.3746 0.0000 9 6 4.9725 5.4697 -0.0005 10 6 5.5486 6.8623 0.0001 11 1 6.5801 6.8290 -0.3506 12 7 4.7559 7.7205 -0.8906 13 6 5.5115 7.4206 1.3994 14 1 5.1113 6.8263 2.2075 15 6 5.9885 8.6902 1.6479 16 7 5.9567 9.1773 2.8691 17 14 6.6801 9.7183 0.2500 18 1 8.1377 9.4644 0.1228 19 1 6.0009 9.3501 -1.0183 20 1 6.4513 11.1578 0.5342 21 6 3.6004 5.2921 0.0048 22 6 3.0664 4.0201 -0.0009 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.9591 2.2433 0.0000 29 1 6.8884 4.5204 -0.0004 30 1 4.8174 7.4039 -1.8467 31 1 3.7950 7.7676 -0.5864 32 1 6.2926 10.0703 3.0440 33 1 2.9458 6.1512 0.0088 34 1 1.9951 3.8828 -0.0013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309147438.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:33 Heat of formation + Delta-G solvation = -60.321342 kcal Electronic energy + Delta-G solvation = -17421.721363 eV Core-core repulsion = 14512.562530 eV Total energy + Delta-G solvation = -2909.158833 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.45715 -38.80110 -36.56255 -34.89900 -32.11008 -31.82854 -30.71112 -29.91643 -26.57874 -24.58810 -22.98616 -22.27749 -21.32462 -19.86623 -17.90727 -17.04804 -16.78346 -16.56999 -15.26860 -15.02723 -14.36766 -14.35405 -14.24833 -13.95019 -13.36012 -13.12835 -12.94249 -12.49966 -12.38363 -12.14467 -11.96249 -11.79044 -11.55517 -10.83137 -10.72550 -10.64359 -10.50503 -10.25465 -9.99608 -9.36376 -8.67292 -8.60560 -8.30792 -7.30901 -6.06429 -4.18246 1.01230 1.71978 2.64817 2.75806 3.47260 3.58190 3.88174 4.13590 4.65269 4.69196 4.73134 4.82394 5.06254 5.12659 5.23836 5.24404 5.42715 5.54120 5.55647 5.73207 5.74878 5.79735 5.86291 6.16630 6.27280 6.36563 6.56215 6.63742 6.73283 7.10757 7.21576 7.50258 7.81871 8.07292 8.24444 8.60092 8.92879 9.56439 11.02894 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.044232 B = 0.004519 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.873128 B = 6194.528153 C = 6324.857467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.355 6.355 4 C 0.515 3.485 5 O -0.518 6.518 6 C -0.157 4.157 7 C -0.053 4.053 8 C -0.134 4.134 9 C -0.025 4.025 10 C 0.213 3.787 11 H 0.050 0.950 12 N -0.834 5.834 13 C -0.524 4.524 14 H 0.071 0.929 15 C 0.087 3.913 16 N -0.896 5.896 17 Si 0.867 3.133 18 H -0.296 1.296 19 H -0.192 1.192 20 H -0.303 1.303 21 C -0.134 4.134 22 C -0.061 4.061 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.309 0.691 31 H 0.331 0.669 32 H 0.264 0.736 33 H 0.129 0.871 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.446 -13.668 -8.322 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.272 6.272 4 C 0.362 3.638 5 O -0.408 6.408 6 C -0.159 4.159 7 C -0.071 4.071 8 C -0.152 4.152 9 C -0.027 4.027 10 C 0.103 3.897 11 H 0.068 0.932 12 N -0.363 5.363 13 C -0.562 4.562 14 H 0.089 0.911 15 C -0.118 4.118 16 N -0.533 5.533 17 Si 0.694 3.306 18 H -0.224 1.224 19 H -0.113 1.113 20 H -0.231 1.231 21 C -0.152 4.152 22 C -0.079 4.079 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.121 0.879 31 H 0.145 0.855 32 H 0.074 0.926 33 H 0.146 0.854 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.755 -13.235 -7.991 17.296 hybrid contribution -0.118 -0.489 -0.423 0.657 sum -7.873 -13.724 -8.415 17.920 Atomic orbital electron populations 1.21805 0.92648 1.02846 1.03639 1.22995 0.95295 0.80371 1.02515 1.86562 1.24234 1.32017 1.84436 1.21340 0.80215 0.90140 0.72108 1.90788 1.60403 1.42693 1.46943 1.18900 0.94125 0.89290 1.13554 1.21174 0.93001 0.97851 0.95117 1.21080 1.00497 0.91266 1.02403 1.21668 0.93564 0.98918 0.88596 1.18738 0.93299 0.82919 0.94729 0.93203 1.60078 1.16202 1.55783 1.04214 1.20663 1.44010 1.01138 0.90367 0.91134 1.24984 0.93698 0.97353 0.95776 1.69952 1.45476 1.17264 1.20577 0.87197 0.78088 0.77660 0.87687 1.22400 1.11320 1.23069 1.20993 0.95359 0.96607 1.02257 1.21344 0.99501 0.91769 0.95282 0.91371 0.91450 0.90329 0.91345 0.91282 0.85278 0.85201 0.87937 0.85470 0.92647 0.85352 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 37.16 0.38 -0.74 16 2 C 0.06 0.64 6.19 37.16 0.23 0.88 16 3 O -0.36 -4.83 9.47 -40.54 -0.38 -5.21 16 4 C 0.52 8.14 7.90 34.61 0.27 8.41 16 5 O -0.52 -9.08 16.14 -19.24 -0.31 -9.39 16 6 C -0.16 -2.55 5.87 -104.98 -0.62 -3.16 16 7 C -0.05 -0.87 9.60 -39.17 -0.38 -1.24 16 8 C -0.13 -2.32 9.65 -39.64 -0.38 -2.70 16 9 C -0.03 -0.47 4.89 -104.53 -0.51 -0.98 16 10 C 0.21 4.53 2.34 -70.01 -0.16 4.37 16 11 H 0.05 1.08 7.42 -51.93 -0.39 0.70 16 12 N -0.83 -15.89 5.66 -6.64 -0.04 -15.92 16 13 C -0.52 -13.99 9.28 -34.44 -0.32 -14.31 16 14 H 0.07 2.10 7.98 -52.49 -0.42 1.68 16 15 C 0.09 2.43 5.47 -17.82 -0.10 2.33 16 16 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 17 Si 0.87 20.87 26.94 -169.99 -4.58 16.29 16 18 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 19 H -0.19 -4.21 5.16 56.52 0.29 -3.92 16 20 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 21 C -0.13 -2.27 9.27 -39.64 -0.37 -2.63 16 22 C -0.06 -0.94 9.62 -39.17 -0.38 -1.31 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.13 1.94 7.65 -52.49 -0.40 1.54 16 29 H 0.13 2.08 8.03 -52.48 -0.42 1.66 16 30 H 0.31 5.04 9.06 -39.29 -0.36 4.68 16 31 H 0.33 6.03 7.33 -39.29 -0.29 5.74 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.13 2.06 6.66 -52.48 -0.35 1.71 16 34 H 0.13 1.71 7.61 -52.49 -0.40 1.31 16 LS Contribution 292.67 15.07 4.41 4.41 Total: -1.00 -31.44 292.67 -6.83 -38.27 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.38 Total: 8.96 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -2.33 Total: -11.10 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.74 Total: -42.24 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.69 Total: -14.60 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.58 Total: 16.29 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.44 -6.83 -38.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309147438.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.049 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds