Wall clock time and date at job start Mon Mar 30 2020 03:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.46904 * 2 1 4 4 C 1.34718 * 116.99840 * 179.97438 * 3 2 1 5 5 O 1.21467 * 119.99753 * 0.02562 * 4 3 2 6 6 C 1.47730 * 119.99717 * 179.97438 * 4 3 2 7 7 C 1.39631 * 120.14314 * 180.02562 * 6 4 3 8 8 C 1.37942 * 119.84004 * 180.02562 * 7 6 4 9 9 C 1.38364 * 120.15528 * 359.97438 * 8 7 6 10 10 C 1.50707 * 119.84854 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.46993 * 20.00590 * 10 9 8 12 12 N 1.46909 * 109.46799 * 140.00398 * 10 9 8 13 13 C 1.50696 * 109.47007 * 259.99967 * 10 9 8 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 10 9 15 15 C 1.37885 * 119.99717 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.38364 * 120.30360 * 0.27921 * 9 8 7 22 22 C 1.37953 * 120.14823 * 359.44719 * 21 9 8 23 23 H 1.08996 * 109.47085 * 299.99682 * 1 2 3 24 24 H 1.08996 * 109.47330 * 60.00388 * 1 2 3 25 25 H 1.09008 * 109.46786 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47531 * 240.00093 * 2 1 3 27 27 H 1.08998 * 109.47111 * 120.00110 * 2 1 3 28 28 H 1.07999 * 120.07965 * 0.02562 * 7 6 4 29 29 H 1.08003 * 119.92366 * 180.02562 * 8 7 6 30 30 H 1.00899 * 110.99851 * 296.04501 * 12 10 9 31 31 H 1.00900 * 110.99531 * 59.99711 * 12 10 9 32 32 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 33 33 H 1.08004 * 119.92812 * 179.72567 * 21 9 8 34 34 H 1.07997 * 120.07722 * 180.27727 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3495 1.5455 0.0005 5 8 4.0894 0.5822 0.0005 6 6 3.9141 2.9106 0.0000 7 6 5.2979 3.0971 0.0000 8 6 5.8183 4.3746 0.0000 9 6 4.9725 5.4697 -0.0005 10 6 5.5486 6.8623 0.0001 11 1 6.5801 6.8290 -0.3506 12 7 4.7559 7.7205 -0.8906 13 6 5.5115 7.4206 1.3994 14 1 5.1113 6.8263 2.2075 15 6 5.9885 8.6902 1.6479 16 7 5.9567 9.1773 2.8691 17 14 6.6801 9.7183 0.2500 18 1 8.1377 9.4644 0.1228 19 1 6.0009 9.3501 -1.0183 20 1 6.4513 11.1578 0.5342 21 6 3.6004 5.2921 0.0048 22 6 3.0664 4.0201 -0.0009 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.9591 2.2433 0.0000 29 1 6.8884 4.5204 -0.0004 30 1 4.8174 7.4039 -1.8467 31 1 3.7950 7.7676 -0.5864 32 1 6.2926 10.0703 3.0440 33 1 2.9458 6.1512 0.0088 34 1 1.9951 3.8828 -0.0013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309147438.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:33 Heat of formation + Delta-G solvation = -80.583485 kcal Electronic energy + Delta-G solvation = -17422.599996 eV Core-core repulsion = 14512.562530 eV Total energy + Delta-G solvation = -2910.037466 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.65435 -40.12633 -37.72608 -36.51697 -34.00235 -32.83898 -31.95135 -31.26464 -28.40229 -25.97523 -24.01458 -23.58604 -22.65842 -21.32382 -19.11253 -18.91542 -18.11255 -17.60844 -16.87961 -16.56031 -15.96736 -15.65458 -15.48706 -15.20452 -14.67059 -14.36742 -14.25691 -13.89127 -13.63509 -13.51239 -13.24166 -12.94452 -12.71749 -12.53725 -12.26514 -11.99182 -11.83722 -11.57042 -11.55769 -11.38195 -10.72203 -9.96437 -9.75728 -8.90095 -8.21890 -6.36298 -0.30183 0.42135 1.47671 1.55115 1.58651 1.62906 1.98276 2.63472 2.80880 3.17221 3.60474 3.88763 4.00115 4.00615 4.06363 4.09181 4.23607 4.33340 4.45220 4.48247 4.75949 4.86950 4.92045 4.92412 5.09693 5.12676 5.26376 5.31918 5.42954 5.50913 5.73570 5.89247 6.15748 6.49853 6.63233 6.80283 7.05939 7.42147 8.91170 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.044232 B = 0.004519 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.873128 B = 6194.528153 C = 6324.857467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.355 6.355 4 C 0.519 3.481 5 O -0.539 6.539 6 C -0.161 4.161 7 C -0.055 4.055 8 C -0.139 4.139 9 C -0.048 4.048 10 C 0.222 3.778 11 H 0.050 0.950 12 N -0.835 5.835 13 C -0.517 4.517 14 H 0.025 0.975 15 C 0.027 3.973 16 N -0.951 5.951 17 Si 0.929 3.071 18 H -0.302 1.302 19 H -0.152 1.152 20 H -0.318 1.318 21 C -0.137 4.137 22 C -0.052 4.052 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.333 0.667 31 H 0.338 0.662 32 H 0.262 0.738 33 H 0.136 0.864 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.608 -14.738 -10.447 20.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.272 6.272 4 C 0.366 3.634 5 O -0.431 6.431 6 C -0.162 4.162 7 C -0.073 4.073 8 C -0.158 4.158 9 C -0.050 4.050 10 C 0.111 3.889 11 H 0.068 0.932 12 N -0.366 5.366 13 C -0.556 4.556 14 H 0.043 0.957 15 C -0.172 4.172 16 N -0.591 5.591 17 Si 0.755 3.245 18 H -0.230 1.230 19 H -0.072 1.072 20 H -0.246 1.246 21 C -0.155 4.155 22 C -0.070 4.070 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.121 0.879 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.158 0.842 29 H 0.156 0.844 30 H 0.147 0.853 31 H 0.153 0.847 32 H 0.071 0.929 33 H 0.154 0.846 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.947 -14.335 -10.144 19.709 hybrid contribution 0.140 -0.336 0.288 0.464 sum -8.807 -14.671 -9.856 19.747 Atomic orbital electron populations 1.21833 0.90126 1.04526 1.03782 1.23364 0.97233 0.78770 1.02740 1.86553 1.22744 1.34111 1.83763 1.21242 0.80911 0.89598 0.71651 1.90779 1.61098 1.43232 1.48014 1.19117 0.94313 0.90000 1.12808 1.21295 0.93498 0.97762 0.94738 1.21189 1.00911 0.91363 1.02297 1.21481 0.94593 0.97864 0.91100 1.18382 0.94024 0.84472 0.91977 0.93171 1.59714 1.16462 1.55236 1.05231 1.20907 1.42093 1.00304 0.92246 0.95675 1.25915 0.94405 0.98932 0.97955 1.70107 1.48087 1.17784 1.23096 0.86323 0.77081 0.74833 0.86289 1.22984 1.07179 1.24612 1.21108 0.94772 0.97608 1.01995 1.21539 1.00691 0.90803 0.93929 0.91414 0.91077 0.87881 0.90945 0.91342 0.84234 0.84445 0.85349 0.84710 0.92930 0.84586 0.82767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.29 71.98 0.74 -1.00 16 2 C 0.05 0.97 6.19 71.98 0.45 1.42 16 3 O -0.35 -8.88 9.47 -56.28 -0.53 -9.41 16 4 C 0.52 15.48 7.90 70.33 0.56 16.04 16 5 O -0.54 -18.17 16.14 19.94 0.32 -17.85 16 6 C -0.16 -4.93 5.87 -20.10 -0.12 -5.04 16 7 C -0.05 -1.71 9.60 22.54 0.22 -1.49 16 8 C -0.14 -4.66 9.65 22.23 0.21 -4.45 16 9 C -0.05 -1.74 4.89 -19.80 -0.10 -1.84 16 10 C 0.22 9.18 2.34 43.42 0.10 9.28 16 11 H 0.05 2.09 7.42 -2.39 -0.02 2.07 16 12 N -0.84 -29.57 5.66 -174.93 -0.99 -30.56 16 13 C -0.52 -28.01 9.28 25.60 0.24 -27.77 16 14 H 0.02 1.55 7.98 -2.91 -0.02 1.52 16 15 C 0.03 1.51 5.47 84.66 0.46 1.97 16 16 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 17 Si 0.93 43.03 26.94 68.60 1.85 44.88 16 18 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 19 H -0.15 -6.02 5.16 99.48 0.51 -5.51 16 20 H -0.32 -15.38 7.11 99.48 0.71 -14.68 16 21 C -0.14 -4.39 9.27 22.23 0.21 -4.19 16 22 C -0.05 -1.48 9.62 22.54 0.22 -1.26 16 23 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.14 4.02 7.65 -2.91 -0.02 4.00 16 29 H 0.14 4.28 8.03 -2.91 -0.02 4.26 16 30 H 0.33 9.62 9.06 -89.70 -0.81 8.81 16 31 H 0.34 11.49 7.33 -89.69 -0.66 10.83 16 32 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 33 H 0.14 4.10 6.66 -2.91 -0.02 4.08 16 34 H 0.15 3.61 7.61 -2.91 -0.02 3.59 16 Total: -1.00 -68.78 292.67 3.59 -65.19 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: -0.54 Total: 25.19 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 3.18 Total: -18.34 kcal Atomic # 7 Polarization: -88.97 SS G_CDS: -0.69 Total: -89.66 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.21 Total: -27.25 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.85 Total: 44.88 kcal Total: -68.78 3.59 -65.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309147438.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.398 kcal (2) G-P(sol) polarization free energy of solvation -68.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds