Wall clock time and date at job start Mon Mar 30 2020 03:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45195 * 109.47562 * 2 1 4 4 C 1.34709 * 117.00366 * 180.02562 * 3 2 1 5 5 O 1.21462 * 119.99580 * 359.97438 * 4 3 2 6 6 C 1.47728 * 119.99832 * 180.02562 * 4 3 2 7 7 C 1.39640 * 120.15066 * 359.97438 * 6 4 3 8 8 C 1.37932 * 119.84599 * 180.02562 * 7 6 4 9 9 C 1.38390 * 120.14656 * 0.02562 * 8 7 6 10 10 C 1.38341 * 120.30611 * 359.97438 * 9 8 7 11 11 C 1.50707 * 119.92224 * 179.97438 * 10 9 8 12 12 H 1.09007 * 109.46464 * 200.00103 * 11 10 9 13 13 N 1.46892 * 109.47338 * 320.00247 * 11 10 9 14 14 C 1.50697 * 109.46656 * 80.00399 * 11 10 9 15 15 H 1.08002 * 120.00599 * 0.02562 * 14 11 10 16 16 C 1.37880 * 119.99675 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00210 * 179.97438 * 16 14 11 18 18 Si 1.86800 * 120.00019 * 0.02562 * 16 14 11 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 C 1.37964 * 120.14828 * 0.27641 * 10 9 8 23 23 H 1.09003 * 109.47385 * 59.99449 * 1 2 3 24 24 H 1.08999 * 109.47453 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.46923 * 299.99956 * 1 2 3 26 26 H 1.09001 * 109.46715 * 239.99863 * 2 1 3 27 27 H 1.09000 * 109.46999 * 119.99897 * 2 1 3 28 28 H 1.08000 * 120.08142 * 359.97438 * 7 6 4 29 29 H 1.07996 * 119.92458 * 179.97438 * 8 7 6 30 30 H 1.08001 * 119.84122 * 180.02562 * 9 8 7 31 31 H 1.00903 * 110.99815 * 296.04716 * 13 11 10 32 32 H 1.00896 * 111.00150 * 59.99496 * 13 11 10 33 33 H 0.96998 * 119.99640 * 180.02562 * 17 16 14 34 34 H 1.08002 * 120.07337 * 179.72063 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3496 1.5454 -0.0005 5 8 4.0894 0.5820 -0.0005 6 6 3.9142 2.9105 0.0000 7 6 3.0665 4.0201 0.0005 8 6 3.6004 5.2919 0.0005 9 6 4.9729 5.4695 -0.0006 10 6 5.8184 4.3745 -0.0011 11 6 7.3117 4.5779 -0.0029 12 1 7.8016 3.6699 -0.3546 13 7 7.6528 5.6949 -0.8939 14 6 7.7776 4.8906 1.3957 15 1 7.0640 4.9370 2.2050 16 6 9.1153 5.1165 1.6424 17 7 9.5219 5.3899 2.8628 18 14 10.3498 5.0355 0.2428 19 1 10.8628 3.6478 0.1149 20 1 9.6883 5.4374 -1.0247 21 1 11.4796 5.9568 0.5253 22 6 5.2977 3.0970 -0.0063 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.9952 3.8829 0.0001 29 1 2.9460 6.1510 0.0005 30 1 5.3856 6.4675 -0.0002 31 1 7.4086 5.4826 -1.8496 32 1 7.2103 6.5488 -0.5889 33 1 10.4629 5.5491 3.0362 34 1 5.9590 2.2430 -0.0113 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309167401.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:39 Heat of formation + Delta-G solvation = -59.206937 kcal Electronic energy + Delta-G solvation = -17535.520152 eV Core-core repulsion = 14626.409642 eV Total energy + Delta-G solvation = -2909.110509 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.43135 -38.78286 -36.49243 -34.92189 -32.09328 -31.78307 -30.81214 -29.79072 -26.33388 -24.68395 -23.11846 -22.44139 -21.18978 -19.87509 -17.44616 -16.88753 -16.84031 -16.53750 -15.68043 -14.97688 -14.47445 -14.32368 -14.21446 -13.78186 -13.37568 -13.27555 -12.93252 -12.46706 -12.34601 -11.99246 -11.85767 -11.68481 -11.45584 -10.97699 -10.78140 -10.60909 -10.42530 -10.21310 -9.95786 -9.32363 -8.71364 -8.56448 -8.24366 -7.27727 -6.02522 -4.13677 0.99692 1.74919 2.66413 2.77749 3.51144 3.61245 3.91425 4.14040 4.69194 4.70114 4.75329 4.84289 5.09072 5.12547 5.24557 5.28036 5.40596 5.56960 5.59143 5.69540 5.75363 5.80183 5.91246 6.09209 6.33673 6.39071 6.56318 6.67427 6.73804 7.12375 7.21503 7.55901 7.86053 8.10952 8.28499 8.64492 8.96917 9.60957 11.06959 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.035127 B = 0.005058 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.910191 B = 5534.617355 C = 5851.174085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.356 6.356 4 C 0.512 3.488 5 O -0.509 6.509 6 C -0.133 4.133 7 C -0.084 4.084 8 C -0.136 4.136 9 C -0.080 4.080 10 C -0.078 4.078 11 C 0.218 3.782 12 H 0.049 0.951 13 N -0.833 5.833 14 C -0.523 4.523 15 H 0.070 0.930 16 C 0.086 3.914 17 N -0.898 5.898 18 Si 0.866 3.134 19 H -0.296 1.296 20 H -0.192 1.192 21 H -0.304 1.304 22 C -0.052 4.052 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.309 0.691 32 H 0.330 0.670 33 H 0.264 0.736 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.519 -4.677 -8.342 19.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.274 6.274 4 C 0.358 3.642 5 O -0.398 6.398 6 C -0.135 4.135 7 C -0.103 4.103 8 C -0.154 4.154 9 C -0.098 4.098 10 C -0.080 4.080 11 C 0.109 3.891 12 H 0.066 0.934 13 N -0.362 5.362 14 C -0.561 4.561 15 H 0.088 0.912 16 C -0.118 4.118 17 N -0.534 5.534 18 Si 0.693 3.307 19 H -0.224 1.224 20 H -0.113 1.113 21 H -0.231 1.231 22 C -0.071 4.071 23 H 0.085 0.915 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.146 0.854 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.120 0.880 32 H 0.144 0.856 33 H 0.073 0.927 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.425 -5.067 -8.015 18.106 hybrid contribution -0.315 -0.220 -0.417 0.567 sum -15.740 -5.287 -8.432 18.622 Atomic orbital electron populations 1.21801 0.92697 1.02847 1.03508 1.23001 0.95214 0.80398 1.02649 1.86543 1.24250 1.32047 1.84554 1.21356 0.80225 0.90218 0.72427 1.90819 1.60330 1.42571 1.46065 1.19042 0.94195 0.89338 1.10888 1.21228 0.99379 0.91796 0.97853 1.21062 0.95339 0.96685 1.02286 1.21300 0.92878 0.99473 0.96193 1.21278 1.00080 0.91721 0.94958 1.18629 0.84280 0.91618 0.94599 0.93370 1.60070 1.65421 1.06545 1.04200 1.20697 0.93943 1.50961 0.90491 0.91203 1.24986 0.98699 0.92389 0.95767 1.69955 1.16174 1.46651 1.20642 0.87201 0.78958 0.76797 0.87716 1.22378 1.11336 1.23106 1.21225 0.92556 0.98194 0.95101 0.91514 0.90322 0.91445 0.91289 0.91199 0.85360 0.85816 0.85568 0.87975 0.85608 0.92708 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 37.16 0.38 -0.74 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.36 -4.92 9.47 -40.52 -0.38 -5.31 16 4 C 0.51 8.51 7.90 34.61 0.27 8.79 16 5 O -0.51 -9.65 16.14 -19.24 -0.31 -9.96 16 6 C -0.13 -2.26 5.87 -104.99 -0.62 -2.87 16 7 C -0.08 -1.23 9.62 -39.17 -0.38 -1.60 16 8 C -0.14 -1.94 10.03 -39.64 -0.40 -2.34 16 9 C -0.08 -1.34 9.28 -39.49 -0.37 -1.71 16 10 C -0.08 -1.51 4.88 -104.68 -0.51 -2.02 16 11 C 0.22 4.82 2.35 -70.02 -0.16 4.66 16 12 H 0.05 1.11 7.42 -51.93 -0.39 0.72 16 13 N -0.83 -16.24 5.66 -6.65 -0.04 -16.28 16 14 C -0.52 -14.30 9.28 -34.44 -0.32 -14.62 16 15 H 0.07 2.12 7.98 -52.49 -0.42 1.70 16 16 C 0.09 2.46 5.47 -17.82 -0.10 2.37 16 17 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 18 Si 0.87 21.37 26.94 -169.99 -4.58 16.79 16 19 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 20 H -0.19 -4.32 5.17 56.52 0.29 -4.03 16 21 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 22 C -0.05 -0.98 9.21 -39.17 -0.36 -1.34 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.13 1.56 7.61 -52.49 -0.40 1.16 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.13 1.99 6.65 -52.49 -0.35 1.64 16 31 H 0.31 5.17 9.06 -39.29 -0.36 4.81 16 32 H 0.33 6.08 7.33 -39.29 -0.29 5.79 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.13 2.60 7.62 -52.49 -0.40 2.20 16 LS Contribution 292.68 15.07 4.41 4.41 Total: -1.00 -32.23 292.68 -6.83 -39.06 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -4.38 Total: 8.64 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -2.32 Total: -10.55 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.74 Total: -43.08 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.69 Total: -15.26 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.58 Total: 16.79 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.23 -6.83 -39.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309167401.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.148 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds