Wall clock time and date at job start Mon Mar 30 2020 04:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 116.99686 * 2 1 4 4 O 1.20828 * 120.00129 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00248 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.46618 * 320.00128 * 5 3 2 7 7 N 1.46898 * 109.47400 * 200.00412 * 5 3 2 8 8 C 1.52998 * 109.46923 * 80.00062 * 5 3 2 9 9 C 1.50698 * 109.46739 * 185.00325 * 8 5 3 10 10 C 1.38636 * 119.75125 * 269.72763 * 9 8 5 11 11 C 1.37619 * 120.25328 * 179.72176 * 10 9 8 12 12 C 1.40719 * 119.73914 * 0.57758 * 11 10 9 13 13 C 1.41397 * 120.24332 * 179.68090 * 12 11 10 14 14 H 1.07997 * 119.99988 * 155.30439 * 13 12 11 15 15 C 1.39944 * 119.99808 * 335.30632 * 13 12 11 16 16 N 1.30818 * 120.00194 * 342.23448 * 15 13 12 17 17 Si 1.86803 * 119.99826 * 162.23324 * 15 13 12 18 18 H 1.48497 * 109.47127 * 94.66297 * 17 15 13 19 19 H 1.48496 * 109.46879 * 214.66349 * 17 15 13 20 20 H 1.48497 * 109.46941 * 334.66243 * 17 15 13 21 21 C 1.40719 * 119.51316 * 359.69536 * 12 11 10 22 22 C 1.37619 * 119.74461 * 0.02562 * 21 12 11 23 23 H 1.08994 * 109.47391 * 299.99450 * 1 2 3 24 24 H 1.08997 * 109.47457 * 59.99777 * 1 2 3 25 25 H 1.08999 * 109.46549 * 179.97438 * 1 2 3 26 26 H 1.00896 * 111.00017 * 176.04293 * 7 5 3 27 27 H 1.00899 * 111.00320 * 300.00004 * 7 5 3 28 28 H 1.08997 * 109.47435 * 305.00533 * 8 5 3 29 29 H 1.08997 * 109.46878 * 65.00540 * 8 5 3 30 30 H 1.08004 * 119.87467 * 359.97438 * 10 9 8 31 31 H 1.07996 * 120.13099 * 180.27902 * 11 10 9 32 32 H 0.97002 * 120.00550 * 179.97438 * 16 15 13 33 33 H 1.07993 * 120.12768 * 179.97438 * 21 12 11 34 34 H 1.07996 * 119.87305 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9706 0.5077 0.6597 7 7 3.9873 2.6002 0.4733 8 6 4.0881 1.0519 -1.4214 9 6 5.5943 1.0085 -1.4022 10 6 6.3185 2.1783 -1.5727 11 6 7.6943 2.1514 -1.5512 12 6 8.3658 0.9285 -1.3676 13 6 9.7791 0.8876 -1.3505 14 1 10.2900 0.0879 -0.8350 15 6 10.5158 1.8835 -2.0017 16 7 9.9409 2.6400 -2.9009 17 14 12.3201 2.1324 -1.5869 18 1 13.1584 1.3707 -2.5471 19 1 12.6537 3.5767 -1.6759 20 1 12.5824 1.6479 -0.2080 21 6 7.6205 -0.2534 -1.2013 22 6 6.2454 -0.2019 -1.2204 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 4.9922 2.6566 0.5434 27 1 3.6249 3.3293 -0.1226 28 1 3.7023 0.1079 -1.8062 29 1 3.7563 1.8684 -2.0627 30 1 5.8010 3.1149 -1.7187 31 1 8.2564 3.0646 -1.6797 32 1 10.4514 3.3305 -3.3521 33 1 8.1256 -1.1974 -1.0601 34 1 5.6714 -1.1078 -1.0935 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309175544.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:42 Heat of formation + Delta-G solvation = -96.550160 kcal Electronic energy + Delta-G solvation = -17528.212707 eV Core-core repulsion = 14617.482874 eV Total energy + Delta-G solvation = -2910.729833 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.58984 -39.66833 -37.74169 -36.68385 -35.18477 -32.13399 -31.22685 -29.81031 -28.75678 -26.78291 -24.64887 -22.85721 -21.89872 -21.29571 -19.21608 -19.01352 -17.86644 -17.34931 -17.12441 -16.17719 -15.90063 -15.61858 -15.50893 -15.03670 -14.69249 -14.34941 -14.06391 -13.81874 -13.71874 -13.29819 -13.01552 -12.87998 -12.72201 -12.57841 -12.26017 -12.10729 -11.78731 -11.63075 -11.30188 -11.21775 -11.00098 -9.86747 -9.35528 -9.15624 -8.64114 -6.32682 0.89492 1.12901 1.18531 1.39023 1.48276 1.54242 1.71367 2.21012 2.71475 3.61294 3.73090 3.81148 4.07435 4.15503 4.32098 4.34392 4.43108 4.46168 4.62571 4.71775 4.73448 4.93378 5.08072 5.17330 5.31825 5.38538 5.47056 5.71508 5.97696 6.01348 6.11717 6.22974 6.40387 6.41692 6.71368 6.72860 6.95489 7.04482 8.32568 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.055541 B = 0.004314 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.013208 B = 6489.436388 C = 6722.479602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.474 3.526 4 O -0.529 6.529 5 C 0.112 3.888 6 H 0.118 0.882 7 N -0.832 5.832 8 C -0.072 4.072 9 C -0.204 4.204 10 C -0.096 4.096 11 C -0.187 4.187 12 C 0.080 3.920 13 C -0.502 4.502 14 H 0.074 0.926 15 C 0.037 3.963 16 N -0.825 5.825 17 Si 0.978 3.022 18 H -0.264 1.264 19 H -0.267 1.267 20 H -0.259 1.259 21 C -0.241 4.241 22 C -0.082 4.082 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.133 0.867 26 H 0.361 0.639 27 H 0.347 0.653 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.287 0.713 33 H 0.096 0.904 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.846 -3.120 3.175 11.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.317 3.683 4 O -0.417 6.417 5 C -0.001 4.001 6 H 0.136 0.864 7 N -0.366 5.366 8 C -0.112 4.112 9 C -0.205 4.205 10 C -0.114 4.114 11 C -0.206 4.206 12 C 0.078 3.922 13 C -0.531 4.531 14 H 0.092 0.908 15 C -0.178 4.178 16 N -0.451 5.451 17 Si 0.799 3.201 18 H -0.189 1.189 19 H -0.191 1.191 20 H -0.183 1.183 21 C -0.260 4.260 22 C -0.100 4.100 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.151 0.849 26 H 0.178 0.822 27 H 0.161 0.839 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.452 -2.828 3.672 12.354 hybrid contribution 1.262 0.410 -1.020 1.673 sum -10.190 -2.418 2.652 10.803 Atomic orbital electron populations 1.23567 0.74718 1.05787 1.02501 1.86511 1.25078 1.32549 1.83645 1.23887 0.92032 0.81312 0.71056 1.90607 1.67573 1.37285 1.46269 1.21022 0.86101 0.95124 0.97877 0.86391 1.58688 1.18157 1.02477 1.57242 1.20860 0.92385 1.03155 0.94768 1.19131 0.93592 0.93370 1.14409 1.20736 0.93570 0.96915 1.00190 1.21259 0.93715 0.97666 1.07999 1.17976 0.93823 0.91753 0.88683 1.19863 0.92187 1.09864 1.31216 0.90798 1.26707 1.05357 0.93592 0.92137 1.69866 1.40482 1.16931 1.17791 0.85247 0.76370 0.78582 0.79864 1.18861 1.19111 1.18283 1.21185 0.94397 0.96693 1.13738 1.20740 0.93595 0.96980 0.98647 0.91992 0.91939 0.84867 0.82247 0.83927 0.89763 0.91726 0.87749 0.88374 0.90194 0.88628 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.66 16 2 O -0.36 -8.82 10.57 -51.36 -0.54 -9.36 16 3 C 0.47 13.54 7.21 71.24 0.51 14.05 16 4 O -0.53 -17.43 16.00 21.96 0.35 -17.08 16 5 C 0.11 3.18 3.31 44.17 0.15 3.33 16 6 H 0.12 3.27 8.14 -2.38 -0.02 3.25 16 7 N -0.83 -24.55 8.87 -171.80 -1.52 -26.07 16 8 C -0.07 -2.16 4.97 29.85 0.15 -2.02 16 9 C -0.20 -7.71 4.74 -19.67 -0.09 -7.80 16 10 C -0.10 -4.04 8.36 22.22 0.19 -3.85 16 11 C -0.19 -9.39 8.70 22.73 0.20 -9.19 16 12 C 0.08 4.18 5.57 -21.29 -0.12 4.06 16 13 C -0.50 -26.70 9.05 23.46 0.21 -26.49 16 14 H 0.07 3.81 7.91 -2.91 -0.02 3.79 16 15 C 0.04 1.84 5.14 85.26 0.44 2.28 16 16 N -0.82 -42.60 10.97 21.83 0.24 -42.37 16 17 Si 0.98 37.78 29.60 68.60 2.03 39.81 16 18 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 19 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 20 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 21 C -0.24 -11.29 9.80 22.73 0.22 -11.06 16 22 C -0.08 -3.26 9.67 22.22 0.21 -3.05 16 23 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 24 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 25 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.36 11.13 7.33 -89.70 -0.66 10.47 16 27 H 0.35 10.02 8.58 -89.69 -0.77 9.25 16 28 H 0.08 2.30 8.08 -2.39 -0.02 2.28 16 29 H 0.06 1.92 8.08 -2.39 -0.02 1.90 16 30 H 0.10 3.93 8.06 -2.91 -0.02 3.90 16 31 H 0.10 5.24 6.18 -2.91 -0.02 5.22 16 32 H 0.29 13.44 8.30 -92.71 -0.77 12.67 16 33 H 0.10 4.29 8.06 -2.91 -0.02 4.27 16 34 H 0.12 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -59.60 295.56 3.52 -56.08 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: -0.30 Total: 37.05 kcal Atomic # 6 Polarization: -41.33 SS G_CDS: 3.26 Total: -38.07 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: -1.28 Total: -68.43 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.19 Total: -26.44 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -59.60 3.52 -56.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309175544.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.466 kcal (2) G-P(sol) polarization free energy of solvation -59.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds