Wall clock time and date at job start Mon Mar 30 2020 04:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00055 * 2 1 4 4 O 1.20830 * 119.99964 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00060 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.47225 * 40.00202 * 5 3 2 7 7 N 1.46900 * 109.47021 * 160.00092 * 5 3 2 8 8 C 1.52999 * 109.47260 * 279.99936 * 5 3 2 9 9 C 1.50708 * 109.46865 * 174.99721 * 8 5 3 10 10 C 1.38632 * 119.74401 * 90.00526 * 9 8 5 11 11 C 1.37624 * 120.24747 * 179.97438 * 10 9 8 12 12 C 1.40715 * 119.74131 * 0.02562 * 11 10 9 13 13 C 1.41399 * 120.23986 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00215 * 335.39104 * 13 12 11 15 15 C 1.39941 * 119.99722 * 155.39887 * 13 12 11 16 16 N 1.30829 * 120.00095 * 342.38320 * 15 13 12 17 17 Si 1.86803 * 120.00143 * 162.39016 * 15 13 12 18 18 H 1.48503 * 109.47194 * 94.65747 * 17 15 13 19 19 H 1.48490 * 109.47218 * 214.65999 * 17 15 13 20 20 H 1.48496 * 109.46907 * 334.66335 * 17 15 13 21 21 C 1.40715 * 119.51432 * 0.25861 * 12 11 10 22 22 C 1.37620 * 119.74069 * 359.46511 * 21 12 11 23 23 H 1.09001 * 109.46615 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47114 * 299.99352 * 1 2 3 25 25 H 1.08994 * 109.47412 * 60.00135 * 1 2 3 26 26 H 1.00903 * 110.99968 * 60.00305 * 7 5 3 27 27 H 1.00895 * 111.00078 * 183.95316 * 7 5 3 28 28 H 1.08998 * 109.46799 * 55.00422 * 8 5 3 29 29 H 1.08996 * 109.47419 * 294.99951 * 8 5 3 30 30 H 1.08008 * 119.87904 * 359.97382 * 10 9 8 31 31 H 1.07996 * 120.12669 * 180.02562 * 11 10 9 32 32 H 0.96995 * 120.00023 * 180.02562 * 16 15 13 33 33 H 1.07995 * 120.12909 * 179.72124 * 21 12 11 34 34 H 1.08007 * 119.86999 * 180.27121 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9707 0.5076 -0.6597 7 7 3.9874 2.6001 -0.4732 8 6 4.0882 1.0517 1.4214 9 6 5.5945 1.0081 1.4022 10 6 6.3186 2.1788 1.5670 11 6 7.6945 2.1509 1.5517 12 6 8.3659 0.9281 1.3673 13 6 9.7792 0.8874 1.3493 14 1 10.3415 1.7692 1.0797 15 6 10.4493 -0.2956 1.6807 16 7 9.8218 -1.2436 2.3281 17 14 12.2399 -0.5213 1.1987 18 1 13.1119 -0.1193 2.3315 19 1 12.4870 -1.9471 0.8655 20 1 12.5443 0.3234 0.0159 21 6 7.6205 -0.2529 1.1950 22 6 6.2455 -0.2021 1.2195 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 3.6250 3.3291 0.1229 27 1 4.9923 2.6565 -0.5433 28 1 3.7024 0.1076 1.8060 29 1 3.7565 1.8682 2.0628 30 1 5.8011 3.1163 1.7080 31 1 8.2566 3.0640 1.6808 32 1 10.2864 -2.0634 2.5581 33 1 8.1256 -1.1961 1.0482 34 1 5.6714 -1.1079 1.0919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309302855.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:48 Heat of formation + Delta-G solvation = -80.436780 kcal Electronic energy + Delta-G solvation = -17521.770872 eV Core-core repulsion = 14611.739768 eV Total energy + Delta-G solvation = -2910.031104 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.41275 -38.01656 -36.55226 -35.22982 -33.48663 -30.57339 -29.35499 -28.62021 -27.50046 -25.32666 -23.15808 -21.09950 -20.52378 -19.79790 -17.83130 -17.38599 -16.71145 -16.22127 -15.40392 -14.85732 -14.47322 -14.11204 -13.89447 -13.66867 -13.37123 -13.03062 -12.59082 -12.45428 -12.08704 -11.98540 -11.65832 -11.34776 -11.08506 -10.96059 -10.78459 -10.73350 -10.50408 -10.19576 -9.68053 -9.47950 -9.20946 -8.59755 -7.56084 -7.40301 -6.84618 -4.43751 2.30570 2.62789 2.78894 2.95748 3.03054 3.06411 3.14058 3.87128 4.49257 4.88155 4.92386 5.04709 5.10908 5.32218 5.40202 5.44398 5.65840 5.89295 5.96023 6.22179 6.26941 6.32725 6.42407 6.86372 6.98964 7.17253 7.21932 7.27628 7.50655 7.65522 7.74537 7.88385 7.96238 7.99643 8.20027 8.54773 8.80547 8.87503 10.09746 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.048412 B = 0.004385 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.235572 B = 6384.258807 C = 6710.858901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.469 3.531 4 O -0.507 6.507 5 C 0.108 3.892 6 H 0.114 0.886 7 N -0.829 5.829 8 C -0.079 4.079 9 C -0.223 4.223 10 C -0.087 4.087 11 C -0.224 4.224 12 C 0.113 3.887 13 C -0.461 4.461 14 H 0.078 0.922 15 C 0.076 3.924 16 N -0.791 5.791 17 Si 0.908 3.092 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.260 1.260 21 C -0.163 4.163 22 C -0.091 4.091 23 H 0.099 0.901 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.344 0.656 27 H 0.364 0.636 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.281 0.719 33 H 0.118 0.882 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.429 -0.193 -2.576 9.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.311 3.689 4 O -0.393 6.393 5 C -0.006 4.006 6 H 0.132 0.868 7 N -0.363 5.363 8 C -0.119 4.119 9 C -0.224 4.224 10 C -0.106 4.106 11 C -0.244 4.244 12 C 0.110 3.890 13 C -0.490 4.490 14 H 0.096 0.904 15 C -0.142 4.142 16 N -0.415 5.415 17 Si 0.732 3.268 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.183 4.183 22 C -0.109 4.109 23 H 0.117 0.883 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.157 0.843 27 H 0.181 0.819 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.136 0.864 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.022 -0.310 -3.137 10.507 hybrid contribution 1.071 -0.092 0.896 1.400 sum -8.951 -0.402 -2.241 9.236 Atomic orbital electron populations 1.23215 0.76889 1.03430 1.02311 1.86538 1.22997 1.33790 1.84222 1.24038 0.92207 0.81080 0.71533 1.90607 1.67135 1.36418 1.45163 1.21109 0.85641 0.95102 0.98720 0.86850 1.58696 1.18405 1.02182 1.57066 1.20911 0.95236 1.01994 0.93730 1.18786 0.91565 0.94195 1.17839 1.20368 0.94155 0.95292 1.00760 1.20962 0.93230 0.97706 1.12500 1.17641 0.93304 0.90961 0.87083 1.19633 0.91684 0.97127 1.40579 0.90353 1.25929 1.00828 0.95122 0.92333 1.69820 1.38700 1.06352 1.26672 0.86309 0.81882 0.78552 0.80090 1.19546 1.19970 1.18349 1.21318 0.92075 0.99347 1.05534 1.20545 0.94809 0.95150 1.00440 0.88268 0.92126 0.92073 0.84263 0.81893 0.91344 0.92282 0.89689 0.88953 0.90767 0.86436 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.98 10.57 -39.25 -0.41 -5.40 16 3 C 0.47 7.31 7.20 36.00 0.26 7.57 16 4 O -0.51 -8.83 16.00 -18.75 -0.30 -9.13 16 5 C 0.11 1.67 3.31 -68.87 -0.23 1.44 16 6 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 7 N -0.83 -12.74 8.87 -5.65 -0.05 -12.79 16 8 C -0.08 -1.31 4.97 -27.88 -0.14 -1.45 16 9 C -0.22 -4.43 4.75 -104.33 -0.50 -4.93 16 10 C -0.09 -1.79 8.34 -39.66 -0.33 -2.12 16 11 C -0.22 -5.21 9.80 -38.87 -0.38 -5.59 16 12 C 0.11 2.87 5.57 -106.82 -0.60 2.28 16 13 C -0.46 -11.83 9.05 -37.74 -0.34 -12.17 16 14 H 0.08 1.93 7.91 -52.49 -0.41 1.52 16 15 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 16 N -0.79 -19.84 10.97 55.55 0.61 -19.23 16 17 Si 0.91 18.10 29.59 -169.99 -5.03 13.06 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 21 C -0.16 -4.04 8.70 -38.87 -0.34 -4.38 16 22 C -0.09 -1.98 9.67 -39.66 -0.38 -2.37 16 23 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 25 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 26 H 0.34 5.11 8.58 -39.29 -0.34 4.78 16 27 H 0.36 5.71 7.31 -39.29 -0.29 5.43 16 28 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 29 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 30 H 0.08 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.09 2.04 8.06 -52.49 -0.42 1.61 16 32 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 33 H 0.12 3.03 6.18 -52.49 -0.32 2.70 16 34 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 LS Contribution 295.54 15.07 4.45 4.45 Total: -1.00 -27.42 295.54 -7.02 -34.44 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -4.30 Total: 13.11 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.99 Total: -18.52 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.56 Total: -32.02 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.71 Total: -14.52 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.42 -7.02 -34.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309302855.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.992 kcal (2) G-P(sol) polarization free energy of solvation -27.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds