Wall clock time and date at job start Mon Mar 30 2020 04:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00055 * 2 1 4 4 O 1.20830 * 119.99964 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00060 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.47225 * 40.00202 * 5 3 2 7 7 N 1.46900 * 109.47021 * 160.00092 * 5 3 2 8 8 C 1.52999 * 109.47260 * 279.99936 * 5 3 2 9 9 C 1.50708 * 109.46865 * 174.99721 * 8 5 3 10 10 C 1.38632 * 119.74401 * 90.00526 * 9 8 5 11 11 C 1.37624 * 120.24747 * 179.97438 * 10 9 8 12 12 C 1.40715 * 119.74131 * 0.02562 * 11 10 9 13 13 C 1.41399 * 120.23986 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00215 * 335.39104 * 13 12 11 15 15 C 1.39941 * 119.99722 * 155.39887 * 13 12 11 16 16 N 1.30829 * 120.00095 * 342.38320 * 15 13 12 17 17 Si 1.86803 * 120.00143 * 162.39016 * 15 13 12 18 18 H 1.48503 * 109.47194 * 94.65747 * 17 15 13 19 19 H 1.48490 * 109.47218 * 214.65999 * 17 15 13 20 20 H 1.48496 * 109.46907 * 334.66335 * 17 15 13 21 21 C 1.40715 * 119.51432 * 0.25861 * 12 11 10 22 22 C 1.37620 * 119.74069 * 359.46511 * 21 12 11 23 23 H 1.09001 * 109.46615 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47114 * 299.99352 * 1 2 3 25 25 H 1.08994 * 109.47412 * 60.00135 * 1 2 3 26 26 H 1.00903 * 110.99968 * 60.00305 * 7 5 3 27 27 H 1.00895 * 111.00078 * 183.95316 * 7 5 3 28 28 H 1.08998 * 109.46799 * 55.00422 * 8 5 3 29 29 H 1.08996 * 109.47419 * 294.99951 * 8 5 3 30 30 H 1.08008 * 119.87904 * 359.97382 * 10 9 8 31 31 H 1.07996 * 120.12669 * 180.02562 * 11 10 9 32 32 H 0.96995 * 120.00023 * 180.02562 * 16 15 13 33 33 H 1.07995 * 120.12909 * 179.72124 * 21 12 11 34 34 H 1.08007 * 119.86999 * 180.27121 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9707 0.5076 -0.6597 7 7 3.9874 2.6001 -0.4732 8 6 4.0882 1.0517 1.4214 9 6 5.5945 1.0081 1.4022 10 6 6.3186 2.1788 1.5670 11 6 7.6945 2.1509 1.5517 12 6 8.3659 0.9281 1.3673 13 6 9.7792 0.8874 1.3493 14 1 10.3415 1.7692 1.0797 15 6 10.4493 -0.2956 1.6807 16 7 9.8218 -1.2436 2.3281 17 14 12.2399 -0.5213 1.1987 18 1 13.1119 -0.1193 2.3315 19 1 12.4870 -1.9471 0.8655 20 1 12.5443 0.3234 0.0159 21 6 7.6205 -0.2529 1.1950 22 6 6.2455 -0.2021 1.2195 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 3.6250 3.3291 0.1229 27 1 4.9923 2.6565 -0.5433 28 1 3.7024 0.1076 1.8060 29 1 3.7565 1.8682 2.0628 30 1 5.8011 3.1163 1.7080 31 1 8.2566 3.0640 1.6808 32 1 10.2864 -2.0634 2.5581 33 1 8.1256 -1.1961 1.0482 34 1 5.6714 -1.1079 1.0919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309302855.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:48 Heat of formation + Delta-G solvation = -96.540379 kcal Electronic energy + Delta-G solvation = -17522.469177 eV Core-core repulsion = 14611.739768 eV Total energy + Delta-G solvation = -2910.729409 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.59204 -39.67169 -37.74710 -36.68747 -35.16859 -32.20881 -31.11683 -29.86043 -28.75989 -26.78941 -24.63176 -22.87189 -21.92284 -21.27378 -19.21410 -19.02155 -17.86852 -17.35901 -17.13018 -16.10995 -15.98318 -15.61111 -15.49901 -15.03015 -14.68412 -14.35824 -14.06808 -13.81646 -13.66898 -13.37656 -13.10983 -12.82101 -12.72249 -12.41335 -12.31301 -12.16724 -11.78988 -11.63899 -11.30870 -11.20708 -10.99342 -9.87390 -9.32923 -9.17821 -8.63631 -6.32750 0.89548 1.14446 1.16076 1.39142 1.48377 1.54320 1.71694 2.21211 2.71695 3.61353 3.73068 3.80788 4.07653 4.15104 4.31351 4.34048 4.43186 4.46795 4.58985 4.70766 4.74160 4.93863 5.08701 5.17225 5.31687 5.38688 5.46276 5.71459 5.97536 6.01416 6.11676 6.23141 6.39901 6.44655 6.71616 6.72489 6.95421 7.04400 8.33010 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.048412 B = 0.004385 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.235572 B = 6384.258807 C = 6710.858901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.474 3.526 4 O -0.527 6.527 5 C 0.112 3.888 6 H 0.114 0.886 7 N -0.830 5.830 8 C -0.072 4.072 9 C -0.203 4.203 10 C -0.083 4.083 11 C -0.239 4.239 12 C 0.080 3.920 13 C -0.502 4.502 14 H 0.074 0.926 15 C 0.037 3.963 16 N -0.825 5.825 17 Si 0.979 3.021 18 H -0.264 1.264 19 H -0.266 1.266 20 H -0.259 1.259 21 C -0.188 4.188 22 C -0.095 4.095 23 H 0.132 0.868 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.349 0.651 27 H 0.362 0.638 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.116 0.884 31 H 0.095 0.905 32 H 0.288 0.712 33 H 0.098 0.902 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.751 -0.232 -2.750 11.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.317 3.683 4 O -0.416 6.416 5 C -0.001 4.001 6 H 0.132 0.868 7 N -0.365 5.365 8 C -0.112 4.112 9 C -0.204 4.204 10 C -0.101 4.101 11 C -0.259 4.259 12 C 0.078 3.922 13 C -0.532 4.532 14 H 0.092 0.908 15 C -0.178 4.178 16 N -0.451 5.451 17 Si 0.800 3.200 18 H -0.189 1.189 19 H -0.191 1.191 20 H -0.183 1.183 21 C -0.207 4.207 22 C -0.113 4.113 23 H 0.150 0.850 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.162 0.838 27 H 0.178 0.822 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.134 0.866 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.370 -0.353 -3.308 11.846 hybrid contribution 1.246 -0.058 0.950 1.568 sum -10.123 -0.411 -2.358 10.402 Atomic orbital electron populations 1.23566 0.74691 1.05754 1.02554 1.86518 1.25125 1.32677 1.83646 1.23876 0.92027 0.81291 0.71075 1.90604 1.67549 1.37183 1.46250 1.20996 0.86109 0.95189 0.97847 0.86776 1.58676 1.18208 1.02312 1.57272 1.20861 0.92381 1.03115 0.94811 1.19127 0.93615 0.93143 1.14556 1.20663 0.93227 0.96895 0.99345 1.21163 0.94648 0.97173 1.12905 1.17972 0.93866 0.92126 0.88245 1.19869 0.92370 0.98049 1.42872 0.90785 1.26712 1.05039 0.94391 0.91673 1.69869 1.40562 1.06998 1.27652 0.85244 0.76454 0.78682 0.79665 1.18868 1.19051 1.18307 1.21275 0.93417 0.98527 1.07512 1.20812 0.93919 0.96893 0.99712 0.84994 0.91852 0.91920 0.83756 0.82156 0.90260 0.91212 0.86620 0.88641 0.90168 0.88378 0.87259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.67 16 2 O -0.36 -9.09 10.57 -51.39 -0.54 -9.63 16 3 C 0.47 13.59 7.20 71.24 0.51 14.10 16 4 O -0.53 -17.18 16.00 21.95 0.35 -16.83 16 5 C 0.11 3.19 3.31 44.17 0.15 3.33 16 6 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 7 N -0.83 -23.66 8.87 -171.80 -1.52 -25.19 16 8 C -0.07 -2.17 4.97 29.85 0.15 -2.02 16 9 C -0.20 -7.70 4.75 -19.67 -0.09 -7.79 16 10 C -0.08 -3.28 8.34 22.22 0.19 -3.09 16 11 C -0.24 -11.15 9.80 22.73 0.22 -10.93 16 12 C 0.08 4.20 5.57 -21.29 -0.12 4.08 16 13 C -0.50 -26.72 9.05 23.46 0.21 -26.51 16 14 H 0.07 3.81 7.91 -2.91 -0.02 3.79 16 15 C 0.04 1.83 5.14 85.25 0.44 2.27 16 16 N -0.82 -42.61 10.97 21.83 0.24 -42.37 16 17 Si 0.98 37.74 29.59 68.60 2.03 39.77 16 18 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 19 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 20 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 21 C -0.19 -9.51 8.70 22.73 0.20 -9.31 16 22 C -0.10 -4.08 9.67 22.22 0.21 -3.86 16 23 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 25 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 26 H 0.35 9.49 8.58 -89.69 -0.77 8.72 16 27 H 0.36 10.63 7.31 -89.70 -0.66 9.97 16 28 H 0.08 2.26 8.08 -2.39 -0.02 2.24 16 29 H 0.07 1.99 8.08 -2.39 -0.02 1.97 16 30 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16 31 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 32 H 0.29 13.43 8.30 -92.71 -0.77 12.66 16 33 H 0.10 5.27 6.18 -2.91 -0.02 5.25 16 34 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -59.56 295.54 3.52 -56.04 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: -0.30 Total: 36.25 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 3.26 Total: -38.05 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -1.28 Total: -67.55 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.19 Total: -26.46 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -59.56 3.52 -56.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309302855.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.497 kcal (2) G-P(sol) polarization free energy of solvation -59.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds