Wall clock time and date at job start Mon Mar 30 2020 04:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99846 * 2 1 4 4 H 1.48494 * 109.47132 * 270.00000 * 3 2 1 5 5 H 1.48502 * 109.47211 * 29.99903 * 3 2 1 6 6 H 1.48502 * 109.46991 * 149.99893 * 3 2 1 7 7 C 1.37878 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99973 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99542 * 180.02562 * 7 2 1 10 10 O 1.42896 * 109.46691 * 179.97438 * 9 7 2 11 11 C 1.42909 * 113.99699 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46932 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.47473 * 64.99909 * 12 11 10 14 14 C 1.46893 * 111.00172 * 190.00203 * 13 12 11 15 15 C 1.52990 * 109.47401 * 163.46700 * 14 13 12 16 16 F 1.39899 * 109.47099 * 307.24464 * 15 14 13 17 17 F 1.39896 * 109.47478 * 67.24651 * 15 14 13 18 18 C 1.46900 * 110.99703 * 66.04503 * 13 12 11 19 19 C 1.52998 * 117.49750 * 274.74358 * 18 13 12 20 20 C 1.53004 * 60.00168 * 252.51581 * 19 18 13 21 21 H 0.96997 * 120.00213 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47493 * 59.99816 * 9 7 2 23 23 H 1.09001 * 109.47227 * 299.99558 * 9 7 2 24 24 H 1.08994 * 109.46862 * 60.00207 * 11 10 9 25 25 H 1.08996 * 109.46726 * 299.99969 * 11 10 9 26 26 H 1.08999 * 109.46862 * 304.99793 * 12 11 10 27 27 H 1.08996 * 109.47241 * 185.00039 * 12 11 10 28 28 H 1.09006 * 109.46789 * 283.46680 * 14 13 12 29 29 H 1.09005 * 109.47339 * 43.46388 * 14 13 12 30 30 H 1.09004 * 109.47382 * 187.24548 * 15 14 13 31 31 H 1.08995 * 115.54912 * 60.45457 * 18 13 12 32 32 H 1.08998 * 117.50006 * 0.02562 * 19 18 13 33 33 H 1.09003 * 117.49729 * 145.02205 * 19 18 13 34 34 H 1.08997 * 117.49762 * 252.51689 * 20 19 18 35 35 H 1.08998 * 117.51810 * 107.48676 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 8 3.9878 -2.5412 0.0022 11 6 5.4124 -2.6540 0.0022 12 6 5.8070 -4.1323 0.0028 13 7 5.3677 -4.7569 -1.2522 14 6 5.5139 -6.2174 -1.1928 15 6 4.6879 -6.8585 -2.3096 16 9 3.3723 -6.3870 -2.2462 17 9 5.2431 -6.5260 -3.5499 18 6 6.0966 -4.2011 -2.4001 19 6 5.5549 -2.9138 -3.0248 20 6 5.4052 -4.2449 -3.7643 21 1 -0.4850 0.8400 0.0004 22 1 3.8746 -0.6799 0.8911 23 1 3.8752 -0.6804 -0.8889 24 1 5.8152 -2.1698 0.8918 25 1 5.8151 -2.1712 -0.8881 26 1 5.3311 -4.6350 0.8448 27 1 6.8897 -4.2194 0.0924 28 1 6.5635 -6.4828 -1.3189 29 1 5.1612 -6.5788 -0.2267 30 1 4.6919 -7.9418 -2.1885 31 1 7.1782 -4.3345 -2.3795 32 1 4.6579 -2.4791 -2.5838 33 1 6.2801 -2.1999 -3.4152 34 1 6.0320 -4.4067 -4.6412 35 1 4.4096 -4.6864 -3.8101 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338979925.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:28 Heat of formation + Delta-G solvation = -128.318622 kcal Electronic energy + Delta-G solvation = -19193.082431 eV Core-core repulsion = 15862.578579 eV Total energy + Delta-G solvation = -3330.503852 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.71944 -47.70547 -39.79872 -38.09444 -35.47533 -34.81453 -31.89919 -29.93642 -28.01663 -24.10567 -23.99306 -23.30552 -23.03511 -21.22678 -19.05843 -18.25274 -17.97906 -17.53000 -17.42725 -16.80389 -16.46377 -16.27909 -15.88437 -15.35509 -14.80486 -14.55012 -14.47576 -14.16854 -13.93814 -13.59572 -13.38372 -13.18337 -12.86508 -12.77161 -12.57264 -12.18165 -12.16443 -11.83770 -11.67110 -11.33849 -11.05698 -10.89445 -10.80647 -10.21401 -9.25395 -8.36633 -6.43937 1.31229 1.35003 1.45760 2.29095 2.65294 2.87888 2.95649 3.14646 3.24129 3.52122 3.73765 4.00250 4.08266 4.11663 4.22852 4.25949 4.41559 4.55084 4.56224 4.60790 4.68320 4.72515 4.83889 4.86035 4.96000 5.05974 5.16921 5.38918 5.46500 5.93641 6.03378 6.19344 6.60612 6.84197 7.20875 8.81013 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.028991 B = 0.005847 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.586096 B = 4788.024383 C = 4959.708706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.245 1.245 7 C -0.542 4.542 8 H 0.025 0.975 9 C 0.183 3.817 10 O -0.391 6.391 11 C 0.047 3.953 12 C 0.073 3.927 13 N -0.532 5.532 14 C 0.007 3.993 15 C 0.255 3.745 16 F -0.224 7.224 17 F -0.210 7.210 18 C 0.008 3.992 19 C -0.189 4.189 20 C -0.138 4.138 21 H 0.272 0.728 22 H 0.009 0.991 23 H 0.003 0.997 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.153 0.847 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.890 -12.142 -3.925 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.169 1.169 7 C -0.580 4.580 8 H 0.044 0.956 9 C 0.107 3.893 10 O -0.310 6.310 11 C -0.030 4.030 12 C -0.053 4.053 13 N -0.257 5.257 14 C -0.121 4.121 15 C 0.201 3.799 16 F -0.205 7.205 17 F -0.191 7.191 18 C -0.101 4.101 19 C -0.226 4.226 20 C -0.176 4.176 21 H 0.081 0.919 22 H 0.026 0.974 23 H 0.021 0.979 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.132 0.868 30 H 0.170 0.830 31 H 0.126 0.874 32 H 0.085 0.915 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 18.093 -12.080 -3.996 22.119 hybrid contribution 0.344 0.862 0.050 0.929 sum 18.437 -11.218 -3.946 21.939 Atomic orbital electron populations 1.70044 1.08283 1.28701 1.51314 1.25864 0.95813 1.03419 0.93525 0.85599 0.79463 0.77488 0.79713 1.18571 1.19610 1.16851 1.21171 0.91157 0.93639 1.51996 0.95615 1.20212 0.93080 0.81590 0.94414 1.87973 1.20852 1.27161 1.95050 1.22789 0.82437 0.97600 1.00223 1.22064 0.99047 0.93024 0.91201 1.61493 1.57469 1.03969 1.02805 1.23289 1.00858 0.88110 0.99857 1.22536 0.75996 1.00340 0.81033 1.92986 1.39657 1.91452 1.96426 1.92954 1.85371 1.94284 1.46522 1.22510 0.95151 1.01661 0.90738 1.23159 1.02979 0.91883 1.04616 1.23054 1.01758 0.98396 0.94372 0.91852 0.97366 0.97914 0.92860 0.92942 0.89998 0.90204 0.89055 0.86807 0.82994 0.87433 0.91529 0.87271 0.86961 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.39 13.96 21.45 0.30 -61.09 16 2 C 0.01 0.70 5.47 84.65 0.46 1.16 16 3 Si 0.96 44.88 27.47 68.60 1.88 46.76 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 7 C -0.54 -34.54 9.99 25.60 0.26 -34.29 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 9 C 0.18 9.60 4.76 71.24 0.34 9.94 16 10 O -0.39 -18.97 10.10 -148.98 -1.51 -20.47 16 11 C 0.05 1.60 5.53 71.98 0.40 2.00 16 12 C 0.07 1.94 5.33 86.30 0.46 2.40 16 13 N -0.53 -14.89 4.33 -871.00 -3.77 -18.66 16 14 C 0.01 0.14 5.36 86.30 0.46 0.60 16 15 C 0.25 5.30 5.26 71.98 0.38 5.67 16 16 F -0.22 -7.24 16.70 44.97 0.75 -6.49 16 17 F -0.21 -4.89 12.50 44.97 0.56 -4.32 16 18 C 0.01 0.20 4.17 44.92 0.19 0.38 16 19 C -0.19 -5.73 8.32 30.60 0.25 -5.48 16 20 C -0.14 -3.83 7.42 30.60 0.23 -3.61 16 21 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 22 H 0.01 0.43 7.20 -2.39 -0.02 0.42 16 23 H 0.00 0.16 7.57 -2.39 -0.02 0.14 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.05 1.75 5.41 -2.39 -0.01 1.73 16 26 H 0.08 2.16 7.86 -2.39 -0.02 2.14 16 27 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 28 H 0.09 1.20 8.04 -2.38 -0.02 1.18 16 29 H 0.11 1.89 7.80 -2.38 -0.02 1.87 16 30 H 0.15 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.07 2.68 7.36 -2.39 -0.02 2.67 16 33 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.08 2.56 6.46 -2.39 -0.02 2.55 16 Total: -1.00 -78.35 290.32 2.66 -75.69 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 1.02 Total: 9.80 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 3.43 Total: -21.22 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -3.47 Total: -79.75 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -1.51 Total: -20.47 kcal Atomic # 9 Polarization: -12.13 SS G_CDS: 1.31 Total: -10.81 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal Total: -78.35 2.66 -75.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338979925.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.628 kcal (2) G-P(sol) polarization free energy of solvation -78.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds