Wall clock time and date at job start Mon Mar 30 2020 03:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20761 * 119.99462 * 2 1 4 4 C 1.50694 * 120.00233 * 179.97438 * 2 1 3 5 5 H 1.09001 * 109.47041 * 45.00775 * 4 2 1 6 6 N 1.46899 * 109.47040 * 165.00174 * 4 2 1 7 7 C 1.50697 * 109.47376 * 285.00124 * 4 2 1 8 8 C 1.38280 * 119.97205 * 280.02281 * 7 4 2 9 9 C 1.38255 * 120.11174 * 179.97438 * 8 7 4 10 10 C 1.38163 * 120.05063 * 359.76900 * 9 8 7 11 11 C 1.38710 * 119.94702 * 0.48231 * 10 9 8 12 12 O 1.35900 * 120.05544 * 179.76528 * 11 10 9 13 13 C 1.42898 * 117.00172 * 359.72769 * 12 11 10 14 14 C 1.50703 * 109.47171 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99751 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00001 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00094 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99955 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47116 * 59.99536 * 18 16 14 20 20 H 1.48500 * 109.46585 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46730 * 299.99515 * 18 16 14 22 22 C 1.38129 * 119.97079 * 99.99889 * 7 4 2 23 23 H 1.08997 * 109.47547 * 240.00285 * 1 2 3 24 24 H 1.09001 * 109.47664 * 0.02562 * 1 2 3 25 25 H 1.09010 * 109.47066 * 120.00416 * 1 2 3 26 26 H 1.00900 * 111.00120 * 59.99814 * 6 4 2 27 27 H 1.00898 * 111.00259 * 183.95475 * 6 4 2 28 28 H 1.08000 * 119.95034 * 0.02562 * 8 7 4 29 29 H 1.07991 * 119.97457 * 180.02562 * 9 8 7 30 30 H 1.08006 * 120.02763 * 180.24929 * 10 9 8 31 31 H 1.09002 * 109.47259 * 300.00149 * 13 12 11 32 32 H 1.09001 * 109.47074 * 60.00171 * 13 12 11 33 33 H 0.97000 * 120.00333 * 179.97438 * 17 16 14 34 34 H 1.07999 * 120.02419 * 359.97438 * 22 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3050 0.0006 5 1 1.8130 -1.9833 -0.7259 6 7 3.6639 -1.0603 -0.3579 7 6 2.1932 -1.9234 1.3732 8 6 3.0353 -1.4757 2.3746 9 6 2.9756 -2.0406 3.6350 10 6 2.0708 -3.0509 3.8983 11 6 1.2287 -3.5053 2.8942 12 8 0.3411 -4.5023 3.1494 13 6 0.3334 -5.0409 4.4730 14 6 -0.7073 -6.1268 4.5674 15 1 -1.3030 -6.3804 3.7030 16 6 -0.8991 -6.7963 5.7574 17 7 -0.1734 -6.4877 6.8099 18 14 -2.1886 -8.1428 5.8742 19 1 -1.8686 -9.2202 4.9037 20 1 -2.1966 -8.7023 7.2497 21 1 -3.5253 -7.5763 5.5619 22 6 1.2902 -2.9365 1.6301 23 1 -0.3634 -0.5138 0.8900 24 1 -0.3634 1.0276 -0.0005 25 1 -0.3634 -0.5139 -0.8900 26 1 4.1014 -0.4337 0.3009 27 1 4.1758 -1.9270 -0.4275 28 1 3.7401 -0.6829 2.1720 29 1 3.6340 -1.6890 4.4155 30 1 2.0218 -3.4892 4.8843 31 1 1.3147 -5.4567 4.7018 32 1 0.0986 -4.2502 5.1857 33 1 -0.3085 -6.9585 7.6471 34 1 0.6322 -3.2852 0.8479 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380469346.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:52 Heat of formation + Delta-G solvation = -79.513852 kcal Electronic energy + Delta-G solvation = -17434.936995 eV Core-core repulsion = 14524.945912 eV Total energy + Delta-G solvation = -2909.991083 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.37994 -40.37019 -38.51854 -35.57249 -35.01161 -32.16907 -31.21627 -30.59924 -29.40197 -26.67344 -25.13474 -23.52634 -22.47488 -20.42522 -19.06034 -18.43624 -17.73936 -17.23807 -16.70791 -16.50822 -16.44084 -16.23633 -16.05230 -15.39187 -14.92254 -14.70987 -14.35287 -13.87823 -13.72836 -13.24988 -13.09182 -13.07479 -12.95351 -12.82508 -12.62013 -12.26618 -12.04380 -11.96689 -11.37564 -10.94649 -10.72312 -9.94819 -9.75089 -9.11858 -8.40351 -6.54889 0.18150 0.44678 0.98931 1.39850 1.44080 1.52626 2.25726 2.66005 2.68310 2.94875 3.04930 3.57797 3.82720 3.86890 4.09290 4.17296 4.20274 4.29728 4.46898 4.58838 4.65710 4.67210 4.75341 4.94648 5.00129 5.16811 5.30455 5.41285 5.44531 5.51834 5.78648 5.83279 5.99485 6.43310 6.48776 6.52643 6.76423 7.17419 8.71554 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.039833 B = 0.004339 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.772575 B = 6450.813632 C = 6797.298471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.370 3.630 3 O -0.482 6.482 4 C 0.091 3.909 5 H 0.140 0.860 6 N -0.829 5.829 7 C -0.077 4.077 8 C -0.162 4.162 9 C -0.074 4.074 10 C -0.225 4.225 11 C 0.114 3.886 12 O -0.333 6.333 13 C 0.212 3.788 14 C -0.558 4.558 15 H 0.069 0.931 16 C 0.012 3.988 17 N -0.927 5.927 18 Si 0.987 3.013 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.263 1.263 22 C -0.146 4.146 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.348 0.652 27 H 0.358 0.642 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.110 0.890 31 H 0.000 1.000 32 H 0.001 0.999 33 H 0.274 0.726 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.962 9.168 -11.547 15.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.247 3.753 3 O -0.357 6.357 4 C -0.022 4.022 5 H 0.158 0.842 6 N -0.360 5.360 7 C -0.079 4.079 8 C -0.181 4.181 9 C -0.092 4.092 10 C -0.244 4.244 11 C 0.067 3.933 12 O -0.247 6.247 13 C 0.139 3.861 14 C -0.595 4.595 15 H 0.087 0.913 16 C -0.187 4.187 17 N -0.565 5.565 18 Si 0.809 3.191 19 H -0.188 1.188 20 H -0.200 1.200 21 H -0.188 1.188 22 C -0.165 4.165 23 H 0.115 0.885 24 H 0.102 0.898 25 H 0.139 0.861 26 H 0.163 0.837 27 H 0.173 0.827 28 H 0.157 0.843 29 H 0.162 0.838 30 H 0.128 0.872 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.083 0.917 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.906 9.913 -12.174 16.178 hybrid contribution -0.113 -1.252 1.932 2.305 sum 3.793 8.661 -10.243 13.939 Atomic orbital electron populations 1.22355 0.91871 1.05617 1.06274 1.24885 0.93065 0.88916 0.68458 1.90374 1.72854 1.35595 1.36858 1.20936 0.92405 0.96215 0.92630 0.84244 1.58867 1.01448 1.19794 1.55910 1.20233 0.95741 0.95585 0.96386 1.20996 1.01973 1.02222 0.92876 1.21106 0.96466 0.93903 0.97679 1.21508 1.00822 1.02601 0.99486 1.19670 0.89653 0.88806 0.95138 1.86041 1.55051 1.48233 1.35381 1.20169 0.96570 0.92611 0.76747 1.21297 1.20650 1.19311 0.98242 0.91278 1.25951 0.98764 0.99799 0.94197 1.70047 1.41159 1.42939 1.02338 0.85175 0.78323 0.77866 0.77752 1.18841 1.20004 1.18799 1.20464 1.02466 0.99034 0.94580 0.88490 0.89763 0.86062 0.83748 0.82687 0.84325 0.83759 0.87206 0.98194 0.98153 0.91747 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.25 10.24 71.24 0.73 -2.52 16 2 C 0.37 7.90 6.53 29.10 0.19 8.09 16 3 O -0.48 -13.43 16.95 -1.45 -0.02 -13.45 16 4 C 0.09 1.75 3.32 43.42 0.14 1.89 16 5 H 0.14 2.09 8.00 -2.39 -0.02 2.07 16 6 N -0.83 -15.36 8.76 -174.97 -1.53 -16.89 16 7 C -0.08 -1.87 4.91 -19.88 -0.10 -1.96 16 8 C -0.16 -4.04 9.29 22.28 0.21 -3.83 16 9 C -0.07 -2.13 10.04 22.26 0.22 -1.91 16 10 C -0.23 -8.42 9.04 22.36 0.20 -8.21 16 11 C 0.11 4.46 6.69 22.50 0.15 4.61 16 12 O -0.33 -16.05 10.12 -92.43 -0.94 -16.98 16 13 C 0.21 11.57 4.49 71.24 0.32 11.89 16 14 C -0.56 -31.94 9.43 25.60 0.24 -31.70 16 15 H 0.07 3.86 7.81 -2.91 -0.02 3.84 16 16 C 0.01 0.69 5.46 84.65 0.46 1.15 16 17 N -0.93 -53.78 13.29 21.45 0.28 -53.50 16 18 Si 0.99 42.52 29.54 68.60 2.03 44.54 16 19 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 20 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 22 C -0.15 -4.34 9.61 22.37 0.21 -4.12 16 23 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.08 1.33 8.12 -2.39 -0.02 1.31 16 25 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.35 6.60 6.97 -89.69 -0.63 5.97 16 27 H 0.36 5.56 9.06 -89.70 -0.81 4.74 16 28 H 0.14 2.83 6.66 -2.91 -0.02 2.81 16 29 H 0.14 3.41 8.06 -2.92 -0.02 3.39 16 30 H 0.11 4.58 6.30 -2.91 -0.02 4.56 16 31 H 0.00 0.02 7.67 -2.39 -0.02 0.00 16 32 H 0.00 0.04 7.65 -2.39 -0.02 0.02 16 33 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 34 H 0.15 3.75 8.04 -2.91 -0.02 3.73 16 Total: -1.00 -67.19 297.96 2.50 -64.69 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -0.31 Total: 18.23 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 2.99 Total: -26.64 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -1.25 Total: -70.39 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.96 Total: -30.44 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -67.19 2.50 -64.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380469346.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.824 kcal (2) G-P(sol) polarization free energy of solvation -67.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds