Wall clock time and date at job start Mon Mar 30 2020 04:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34238 * 116.99928 * 2 1 4 4 O 1.20817 * 120.00278 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99695 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.46874 * 179.97438 * 5 3 2 7 7 H 1.09007 * 109.47162 * 55.00078 * 6 5 3 8 8 N 1.46893 * 109.47192 * 294.99912 * 6 5 3 9 9 C 1.50692 * 109.46910 * 174.99638 * 6 5 3 10 10 C 1.37643 * 120.12673 * 100.00143 * 9 6 5 11 11 C 1.38615 * 120.25096 * 179.97438 * 10 9 6 12 12 C 1.38661 * 120.50024 * 0.02562 * 11 10 9 13 13 C 1.37600 * 120.24744 * 0.02617 * 12 11 10 14 14 C 1.40701 * 120.13403 * 279.72655 * 9 6 5 15 15 C 1.41392 * 120.23986 * 359.97438 * 14 9 6 16 16 H 1.08001 * 120.00017 * 333.95376 * 15 14 9 17 17 C 1.39945 * 120.00148 * 153.95321 * 15 14 9 18 18 N 1.30825 * 119.99789 * 343.27127 * 17 15 14 19 19 Si 1.86802 * 120.00117 * 163.27226 * 17 15 14 20 20 H 1.48500 * 109.47406 * 90.00194 * 19 17 15 21 21 H 1.48502 * 109.46924 * 210.00090 * 19 17 15 22 22 H 1.48500 * 109.46973 * 329.99773 * 19 17 15 23 23 H 1.09000 * 109.47439 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46895 * 300.00268 * 1 2 3 25 25 H 1.08997 * 109.46792 * 59.99897 * 1 2 3 26 26 H 1.08997 * 109.47050 * 60.00071 * 5 3 2 27 27 H 1.09005 * 109.46725 * 299.99938 * 5 3 2 28 28 H 1.00900 * 111.00249 * 299.99961 * 8 6 5 29 29 H 1.00906 * 111.00061 * 63.95353 * 8 6 5 30 30 H 1.07998 * 119.87275 * 0.02562 * 10 9 6 31 31 H 1.07993 * 119.74993 * 180.02562 * 11 10 9 32 32 H 1.07996 * 119.87322 * 180.02562 * 12 11 10 33 33 H 1.08005 * 120.12552 * 179.97438 * 13 12 11 34 34 H 0.97001 * 120.00167 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7421 -0.0011 7 1 3.5383 3.2579 0.8408 8 7 3.5773 3.3773 -1.2563 9 6 5.4999 2.8225 0.1222 10 6 6.2745 3.0364 -0.9953 11 6 7.6542 3.1113 -0.8847 12 6 8.2699 2.9715 0.3498 13 6 7.5155 2.7559 1.4802 14 6 6.1135 2.6849 1.3809 15 6 5.3276 2.4711 2.5367 16 1 4.3047 2.8163 2.5656 17 6 5.8752 1.8121 3.6432 18 7 6.9728 1.1126 3.5107 19 14 5.0390 1.9313 5.3093 20 1 4.0569 0.8264 5.4505 21 1 6.0589 1.8272 6.3836 22 1 4.3365 3.2351 5.4184 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 3.9557 0.7810 -0.8908 27 1 3.9564 0.7805 0.8892 28 1 3.9925 2.9169 -2.0524 29 1 2.5712 3.3937 -1.3322 30 1 5.8055 3.1472 -1.9617 31 1 8.2541 3.2799 -1.7667 32 1 9.3456 3.0320 0.4244 33 1 7.9972 2.6468 2.4407 34 1 7.3522 0.6555 4.2775 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380880887.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:26 Heat of formation + Delta-G solvation = -89.895130 kcal Electronic energy + Delta-G solvation = -18207.234309 eV Core-core repulsion = 15296.793060 eV Total energy + Delta-G solvation = -2910.441249 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.64604 -39.76528 -37.77620 -36.15373 -35.44754 -31.76725 -30.86878 -30.51796 -28.21644 -27.13330 -24.74653 -22.66920 -22.05136 -20.73960 -19.18699 -18.69035 -17.90659 -17.57241 -17.16648 -16.48664 -16.16458 -15.44674 -15.22193 -14.77564 -14.54782 -14.36042 -14.19838 -13.89993 -13.39268 -13.06049 -12.91616 -12.89114 -12.80621 -12.53899 -12.30972 -12.11631 -11.81692 -11.60610 -11.27636 -11.06011 -10.97505 -9.64013 -9.20604 -9.13303 -8.58639 -6.27628 1.00335 1.09821 1.16887 1.38147 1.47919 1.54452 1.79863 2.21052 2.80128 3.67898 3.77391 3.83848 4.18118 4.25214 4.29022 4.32348 4.50075 4.56670 4.67819 4.75154 4.82605 4.93316 5.09241 5.26209 5.32454 5.42597 5.57146 5.79491 6.02250 6.15474 6.24894 6.37732 6.49213 6.62624 6.73026 6.80945 7.01143 7.11252 8.37344 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015416 B = 0.009526 C = 0.006426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.855240 B = 2938.761956 C = 4356.275281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.367 6.367 3 C 0.469 3.531 4 O -0.530 6.530 5 C -0.137 4.137 6 C 0.185 3.815 7 H 0.060 0.940 8 N -0.840 5.840 9 C -0.195 4.195 10 C -0.078 4.078 11 C -0.241 4.241 12 C -0.114 4.114 13 C -0.190 4.190 14 C 0.090 3.910 15 C -0.488 4.488 16 H 0.072 0.928 17 C 0.042 3.958 18 N -0.822 5.822 19 Si 0.963 3.037 20 H -0.263 1.263 21 H -0.267 1.267 22 H -0.265 1.265 23 H 0.132 0.868 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.115 0.885 27 H 0.103 0.897 28 H 0.341 0.659 29 H 0.346 0.654 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.898 -3.772 -4.848 10.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C 0.314 3.686 4 O -0.419 6.419 5 C -0.177 4.177 6 C 0.073 3.927 7 H 0.078 0.922 8 N -0.373 5.373 9 C -0.197 4.197 10 C -0.096 4.096 11 C -0.260 4.260 12 C -0.132 4.132 13 C -0.209 4.209 14 C 0.088 3.912 15 C -0.518 4.518 16 H 0.090 0.910 17 C -0.173 4.173 18 N -0.448 5.448 19 Si 0.785 3.215 20 H -0.188 1.188 21 H -0.192 1.192 22 H -0.189 1.189 23 H 0.150 0.850 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.133 0.867 27 H 0.121 0.879 28 H 0.156 0.844 29 H 0.161 0.839 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.632 -2.992 -4.446 9.326 hybrid contribution -0.621 -0.898 0.833 1.373 sum -8.253 -3.890 -3.613 9.813 Atomic orbital electron populations 1.23571 0.74780 1.05711 1.02622 1.86539 1.25190 1.32911 1.83677 1.24066 0.92266 0.81290 0.70936 1.90581 1.67660 1.36812 1.46890 1.22291 0.86475 1.02333 1.06573 1.19392 0.92036 0.88664 0.92613 0.92198 1.58879 1.14624 1.60297 1.03488 1.19671 0.93405 1.13483 0.93141 1.20653 0.93288 0.98209 0.97486 1.20773 0.94820 1.13607 0.96797 1.20968 0.98459 1.00233 0.93586 1.21262 0.94609 1.07534 0.97508 1.17706 0.92449 0.88855 0.92198 1.19636 0.99451 1.34094 0.98581 0.91016 1.26532 0.95030 0.92294 1.03415 1.69865 1.19357 1.22252 1.33325 0.85489 0.79002 0.79677 0.77376 1.18752 1.19164 1.18873 0.85026 0.92302 0.91370 0.86733 0.87859 0.84418 0.83888 0.86029 0.86688 0.87699 0.88391 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.73 16 2 O -0.37 -10.56 10.57 -51.49 -0.54 -11.10 16 3 C 0.47 15.59 7.77 71.24 0.55 16.15 16 4 O -0.53 -19.16 13.90 21.99 0.31 -18.85 16 5 C -0.14 -4.87 5.39 29.85 0.16 -4.70 16 6 C 0.18 7.40 2.13 44.17 0.09 7.50 16 7 H 0.06 2.75 6.54 -2.38 -0.02 2.73 16 8 N -0.84 -28.85 8.67 -171.82 -1.49 -30.34 16 9 C -0.20 -8.92 5.14 -19.41 -0.10 -9.02 16 10 C -0.08 -3.27 9.24 22.22 0.21 -3.07 16 11 C -0.24 -10.19 10.05 22.46 0.23 -9.96 16 12 C -0.11 -5.25 10.02 22.22 0.22 -5.03 16 13 C -0.19 -9.86 8.69 22.73 0.20 -9.66 16 14 C 0.09 4.69 5.56 -21.29 -0.12 4.58 16 15 C -0.49 -25.30 7.74 23.46 0.18 -25.11 16 16 H 0.07 3.69 6.47 -2.91 -0.02 3.67 16 17 C 0.04 2.09 5.15 85.26 0.44 2.53 16 18 N -0.82 -41.95 10.98 21.83 0.24 -41.71 16 19 Si 0.96 38.24 29.59 68.60 2.03 40.27 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 21 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 22 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 23 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.06 1.24 8.13 -2.38 -0.02 1.22 16 25 H 0.07 1.29 8.13 -2.39 -0.02 1.27 16 26 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 27 H 0.10 4.15 7.45 -2.38 -0.02 4.13 16 28 H 0.34 10.19 7.30 -89.69 -0.65 9.53 16 29 H 0.35 11.43 6.89 -89.69 -0.62 10.82 16 30 H 0.12 4.33 6.24 -2.91 -0.02 4.31 16 31 H 0.12 4.15 8.06 -2.91 -0.02 4.12 16 32 H 0.10 4.29 8.06 -2.91 -0.02 4.27 16 33 H 0.10 5.36 6.22 -2.91 -0.02 5.34 16 34 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 Total: -1.00 -58.90 286.54 3.67 -55.23 By element: Atomic # 1 Polarization: 40.71 SS G_CDS: -0.13 Total: 40.58 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 3.26 Total: -34.08 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -1.25 Total: -72.05 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.24 Total: -29.96 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -58.90 3.67 -55.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380880887.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.667 kcal (2) G-P(sol) polarization free energy of solvation -58.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds