Wall clock time and date at job start Mon Mar 30 2020 04:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00386 * 2 1 4 4 H 1.48500 * 109.47255 * 270.00410 * 3 2 1 5 5 H 1.48510 * 109.46659 * 30.00180 * 3 2 1 6 6 H 1.48494 * 109.47361 * 150.00089 * 3 2 1 7 7 C 1.37874 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00342 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99875 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.42891 * 113.99915 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.47221 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.46935 * 65.00001 * 12 11 10 14 14 C 1.46899 * 110.99998 * 180.02562 * 13 12 11 15 15 H 1.09004 * 110.43314 * 32.45567 * 14 13 12 16 16 C 1.54265 * 110.48438 * 269.77534 * 14 13 12 17 17 C 1.53877 * 106.59605 * 217.71134 * 16 14 13 18 18 C 1.54463 * 106.68421 * 0.15594 * 17 16 14 19 19 F 1.39908 * 110.40710 * 264.75686 * 18 17 16 20 20 F 1.39910 * 110.66161 * 142.05395 * 18 17 16 21 21 C 1.54887 * 110.48630 * 154.99580 * 14 13 12 22 22 H 0.96996 * 119.99820 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47255 * 60.00525 * 9 7 2 24 24 H 1.08993 * 109.47267 * 300.00062 * 9 7 2 25 25 H 1.08997 * 109.47467 * 59.99971 * 11 10 9 26 26 H 1.09003 * 109.47253 * 299.99867 * 11 10 9 27 27 H 1.08995 * 109.47024 * 304.99986 * 12 11 10 28 28 H 1.08999 * 109.47061 * 184.99638 * 12 11 10 29 29 H 1.00907 * 110.99729 * 303.95115 * 13 12 11 30 30 H 1.08995 * 110.03137 * 336.99058 * 16 14 13 31 31 H 1.08998 * 110.03049 * 98.37746 * 16 14 13 32 32 H 1.08999 * 110.03493 * 119.28247 * 17 16 14 33 33 H 1.09003 * 110.03187 * 240.66884 * 17 16 14 34 34 H 1.09002 * 110.75856 * 274.93647 * 21 14 13 35 35 H 1.09006 * 110.75640 * 38.12633 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6479 -5.9563 -0.0017 13 7 3.4081 -5.8885 1.2535 14 6 4.4595 -6.9138 1.2883 15 1 4.8418 -7.1010 0.2848 16 6 3.9227 -8.2165 1.9163 17 6 5.0671 -8.8003 2.7632 18 6 6.2609 -7.8300 2.6246 19 9 7.1281 -8.2643 1.6162 20 9 6.9430 -7.7096 3.8402 21 6 5.6075 -6.4811 2.2337 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 0.9451 -4.9822 -0.8913 26 1 0.9445 -4.9827 0.8886 27 1 3.3214 -5.7954 -0.8435 28 1 2.1818 -6.9375 -0.0917 29 1 3.7967 -4.9676 1.3916 30 1 3.0629 -7.9989 2.5499 31 1 3.6404 -8.9200 1.1330 32 1 4.7628 -8.8660 3.8077 33 1 5.3406 -9.7878 2.3914 34 1 6.3201 -5.8441 1.7098 35 1 5.2125 -5.9739 3.1140 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385205535.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:18 Heat of formation + Delta-G solvation = -165.002425 kcal Electronic energy + Delta-G solvation = -18116.264811 eV Core-core repulsion = 14784.170230 eV Total energy + Delta-G solvation = -3332.094581 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.128 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.02376 -47.16448 -38.35981 -36.77368 -34.04083 -32.63789 -29.67314 -28.54957 -26.97844 -25.69552 -22.40852 -21.72665 -21.14826 -20.47886 -17.80614 -16.97115 -16.49564 -16.13272 -15.87266 -15.41770 -15.07376 -14.86219 -14.38957 -14.26812 -13.78630 -13.50232 -13.46000 -13.28704 -12.49811 -12.38750 -12.11070 -11.85556 -11.63518 -11.52821 -11.28648 -10.95193 -10.87508 -10.75830 -10.73148 -10.51302 -10.03690 -9.13666 -8.85776 -8.38484 -8.20368 -6.13128 -4.15173 3.28731 3.33966 3.38908 3.47460 3.67909 3.96813 4.09100 4.32716 4.45987 4.82913 4.90851 4.95423 5.03951 5.10246 5.23471 5.24037 5.41656 5.45068 5.59685 5.67270 5.74074 5.82588 5.96692 6.05716 6.15287 6.29988 7.07298 7.10437 7.40716 7.50926 7.76355 8.12473 8.54013 8.97606 9.49896 10.98380 Molecular weight = 249.13amu Principal moments of inertia in cm(-1) A = 0.032324 B = 0.003870 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.030513 B = 7232.853997 C = 7805.615395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.065 0.935 9 C 0.197 3.803 10 O -0.400 6.400 11 C 0.061 3.939 12 C 0.065 3.935 13 N -0.677 5.677 14 C 0.083 3.917 15 H 0.060 0.940 16 C -0.114 4.114 17 C -0.157 4.157 18 C 0.279 3.721 19 F -0.197 7.197 20 F -0.198 7.198 21 C -0.163 4.163 22 H 0.264 0.736 23 H 0.004 0.996 24 H 0.006 0.994 25 H 0.041 0.959 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.359 0.641 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.469 -17.328 4.014 19.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.123 3.877 10 O -0.320 6.320 11 C -0.017 4.017 12 C -0.064 4.064 13 N -0.311 5.311 14 C -0.028 4.028 15 H 0.077 0.923 16 C -0.152 4.152 17 C -0.196 4.196 18 C 0.242 3.758 19 F -0.178 7.178 20 F -0.179 7.179 21 C -0.201 4.201 22 H 0.074 0.926 23 H 0.022 0.978 24 H 0.024 0.976 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.180 0.820 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.088 -17.545 4.364 19.806 hybrid contribution 0.853 1.182 -0.636 1.590 sum 8.940 -16.363 3.728 19.015 Atomic orbital electron populations 1.69962 1.06113 1.27188 1.50457 1.24944 0.94966 0.99431 0.95105 0.86343 0.79670 0.82292 0.78219 1.20488 1.21047 1.19634 1.21048 0.93990 0.89407 1.50959 0.91634 1.20182 0.88686 0.83411 0.95419 1.87780 1.35845 1.13145 1.95244 1.22294 0.94477 0.85245 0.99635 1.22025 0.95949 0.98200 0.90224 1.60582 1.25849 1.08822 1.35799 1.22272 0.90091 0.93064 0.97348 0.92253 1.22192 0.97793 0.95880 0.99331 1.23149 0.93804 0.98935 1.03700 1.21901 0.84178 0.97101 0.72626 1.93007 1.72863 1.91085 1.60825 1.93005 1.82539 1.96909 1.45470 1.23638 0.98585 0.94983 1.02927 0.92627 0.97802 0.97575 0.94063 0.93478 0.94527 0.90560 0.81997 0.89123 0.91083 0.88539 0.89351 0.88990 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.67 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -15.01 9.43 -34.44 -0.32 -15.34 16 8 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 9 C 0.20 5.34 5.69 36.01 0.20 5.54 16 10 O -0.40 -9.29 9.85 -35.23 -0.35 -9.63 16 11 C 0.06 1.10 6.28 37.16 0.23 1.33 16 12 C 0.07 0.92 5.97 -3.82 -0.02 0.90 16 13 N -0.68 -9.16 6.31 -104.97 -0.66 -9.82 16 14 C 0.08 0.91 3.20 -66.06 -0.21 0.69 16 15 H 0.06 0.66 7.82 -51.93 -0.41 0.26 16 16 C -0.11 -1.03 6.53 -25.61 -0.17 -1.20 16 17 C -0.16 -1.33 6.42 -25.51 -0.16 -1.49 16 18 C 0.28 2.95 2.51 -24.97 -0.06 2.89 16 19 F -0.20 -2.35 17.17 2.25 0.04 -2.31 16 20 F -0.20 -2.36 17.17 2.25 0.04 -2.32 16 21 C -0.16 -1.72 5.84 -24.74 -0.14 -1.86 16 22 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 23 H 0.00 0.12 8.14 -51.93 -0.42 -0.31 16 24 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.04 0.53 8.07 -51.93 -0.42 0.11 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.36 5.46 7.97 -39.29 -0.31 5.14 16 30 H 0.09 0.87 8.04 -51.93 -0.42 0.45 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.73 8.11 -51.93 -0.42 0.31 16 33 H 0.09 0.65 8.12 -51.93 -0.42 0.23 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 301.36 15.07 4.54 4.54 Total: -1.00 -30.46 301.36 -6.76 -37.22 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.33 Total: -1.31 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.76 Total: -7.01 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.07 Total: -35.82 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.35 Total: -9.63 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.08 Total: -4.63 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.46 -6.76 -37.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385205535.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.781 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds